Wall clock time and date at job start Tue Mar 31 2020 12:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47250 * 2 1 4 4 C 1.52996 * 109.47091 * 240.00041 * 2 1 3 5 5 C 1.50702 * 109.47012 * 65.00334 * 4 2 1 6 6 H 1.07997 * 120.00398 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99958 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99921 * 179.72011 * 7 5 4 10 10 H 1.48501 * 109.47215 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47233 * 119.99449 * 9 7 5 12 12 H 1.48498 * 109.47239 * 239.99771 * 9 7 5 13 13 C 1.53004 * 109.47224 * 119.99891 * 2 1 3 14 14 N 1.46899 * 109.46928 * 182.68623 * 13 2 1 15 15 C 1.46905 * 110.99731 * 65.84550 * 14 13 2 16 16 C 1.46900 * 110.99876 * 189.79262 * 14 13 2 17 17 H 1.09005 * 109.47146 * 270.64883 * 16 14 13 18 18 C 1.53001 * 109.47049 * 30.64819 * 16 14 13 19 19 C 1.52998 * 109.46646 * 60.00354 * 18 16 14 20 20 C 1.53001 * 109.47418 * 59.99813 * 19 18 16 21 21 C 1.52991 * 109.46989 * 299.99774 * 20 19 18 22 22 C 1.52996 * 109.47277 * 60.00214 * 21 20 19 23 23 H 1.09002 * 109.47169 * 59.99437 * 22 21 20 24 24 S 1.81403 * 109.47393 * 180.02562 * 22 21 20 25 25 C 1.81400 * 101.91892 * 291.20634 * 24 22 21 26 26 O 1.42093 * 108.58075 * 45.69524 * 24 22 21 27 27 O 1.42100 * 108.57602 * 176.72275 * 24 22 21 28 28 H 1.09001 * 109.46999 * 294.76686 * 1 2 3 29 29 H 1.08997 * 109.46872 * 54.76698 * 1 2 3 30 30 H 1.09002 * 109.46765 * 174.76882 * 1 2 3 31 31 H 1.08997 * 109.47365 * 304.99757 * 4 2 1 32 32 H 1.09003 * 109.46879 * 184.99742 * 4 2 1 33 33 H 0.96998 * 120.00103 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47342 * 302.69253 * 13 2 1 35 35 H 1.09004 * 109.46626 * 62.69279 * 13 2 1 36 36 H 1.08993 * 109.47125 * 52.45682 * 15 14 13 37 37 H 1.08998 * 109.47202 * 172.46491 * 15 14 13 38 38 H 1.08998 * 109.46683 * 292.46169 * 15 14 13 39 39 H 1.09003 * 109.46745 * 179.97438 * 18 16 14 40 40 H 1.08991 * 109.47280 * 300.00172 * 18 16 14 41 41 H 1.09008 * 109.47234 * 299.99534 * 19 18 16 42 42 H 1.09005 * 109.47157 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.46931 * 179.97438 * 20 19 18 44 44 H 1.08996 * 109.47312 * 60.00029 * 20 19 18 45 45 H 1.09002 * 109.47481 * 299.99842 * 21 20 19 46 46 H 1.09004 * 109.47219 * 179.97438 * 21 20 19 47 47 H 1.08998 * 109.47201 * 60.00456 * 25 24 22 48 48 H 1.08998 * 109.47198 * 179.97438 * 25 24 22 49 49 H 1.08999 * 109.47677 * 300.00170 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4765 6 1 1.0801 0.9743 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6755 -1.5192 -3.8512 9 14 1.4915 0.5586 -5.2500 10 1 0.7300 1.7671 -4.8440 11 1 2.7066 0.9674 -5.9996 12 1 0.6394 -0.2951 -6.1162 13 6 2.0401 -0.7212 1.2493 14 7 3.5076 -0.6652 1.2821 15 6 3.9780 0.7158 1.4542 16 6 4.0444 -1.5390 2.3339 17 1 4.1216 -0.9799 3.2665 18 6 3.1087 -2.7334 2.5314 19 6 3.0004 -3.5182 1.2225 20 6 4.3866 -4.0186 0.8116 21 6 5.3221 -2.8243 0.6142 22 6 5.4306 -2.0395 1.9230 23 1 5.8288 -2.6879 2.7035 24 16 6.5392 -0.6229 1.6888 25 6 8.1475 -1.4361 1.4815 26 8 6.1978 0.0225 0.4698 27 8 6.5664 0.1343 2.8909 28 1 -0.3633 0.4305 0.9332 29 1 -0.3633 0.5929 -0.8394 30 1 -0.3633 -1.0234 -0.0937 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2055 33 1 2.9228 -1.8421 -4.7318 34 1 1.6379 -0.2361 2.1386 35 1 1.7166 -1.7619 1.2254 36 1 3.4868 1.1618 2.3189 37 1 5.0569 0.7155 1.6092 38 1 3.7392 1.2947 0.5621 39 1 3.5073 -3.3820 3.3116 40 1 2.1212 -2.3769 2.8241 41 1 2.6021 -2.8698 0.4420 42 1 2.3342 -4.3694 1.3632 43 1 4.3093 -4.5781 -0.1207 44 1 4.7849 -4.6670 1.5920 45 1 4.9239 -2.1759 -0.1663 46 1 6.3099 -3.1808 0.3219 47 1 8.1110 -2.0982 0.6165 48 1 8.9191 -0.6816 1.3287 49 1 8.3787 -2.0171 2.3743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602476310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:20 Heat of formation + Delta-G solvation = -74.469120 kcal Electronic energy + Delta-G solvation = -27869.060498 eV Core-core repulsion = 24344.355506 eV Total energy + Delta-G solvation = -3524.704992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96901 -37.92920 -37.52750 -37.19878 -35.43043 -33.95721 -32.38263 -30.73179 -30.33989 -28.98060 -27.66668 -25.69123 -24.58479 -23.80035 -22.74588 -20.40986 -20.27353 -19.63752 -18.41524 -18.01674 -17.62309 -16.75136 -16.60882 -16.30008 -16.17331 -15.84729 -15.45412 -14.86079 -14.57448 -14.40579 -14.12711 -14.00551 -13.85778 -13.82874 -13.63565 -13.45468 -13.28735 -13.00955 -12.92256 -12.87058 -12.76682 -12.66265 -12.63283 -12.34164 -12.26585 -12.18714 -11.97286 -11.78065 -11.43789 -11.34853 -11.20755 -11.11591 -10.83057 -10.72830 -10.56732 -10.39818 -9.07707 -8.06123 -6.12310 -0.86463 1.38777 1.40253 1.51714 1.92004 2.47089 2.74054 2.86635 3.19418 3.26545 3.54717 3.72626 3.95170 4.01935 4.06513 4.17267 4.23304 4.28051 4.35177 4.38818 4.41291 4.48015 4.54721 4.60609 4.62123 4.77589 4.80776 4.87398 4.92592 4.95133 5.01000 5.05237 5.11030 5.26756 5.32814 5.36753 5.41792 5.46529 5.48859 5.56150 5.69431 5.78432 6.02371 6.12186 6.19070 6.25628 6.46494 7.05937 7.52986 9.04941 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.005060 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.705770 B = 5532.086153 C = 5963.467397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 H 0.039 0.961 4 C 0.055 3.945 5 C -0.529 4.529 6 H 0.048 0.952 7 C 0.002 3.998 8 N -0.925 5.925 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.278 1.278 13 C 0.057 3.943 14 N -0.538 5.538 15 C 0.011 3.989 16 C 0.087 3.913 17 H 0.067 0.933 18 C -0.105 4.105 19 C -0.134 4.134 20 C -0.099 4.099 21 C -0.104 4.104 22 C -0.536 4.536 23 H 0.181 0.819 24 S 2.393 3.607 25 C -0.645 4.645 26 O -0.968 6.968 27 O -0.985 6.985 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.047 0.953 31 H -0.015 1.015 32 H 0.007 0.993 33 H 0.258 0.742 34 H 0.038 0.962 35 H 0.101 0.899 36 H 0.033 0.967 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.092 0.908 47 H 0.147 0.853 48 H 0.135 0.865 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.238 -6.968 17.125 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 H 0.058 0.942 4 C 0.018 3.982 5 C -0.567 4.567 6 H 0.066 0.934 7 C -0.195 4.195 8 N -0.566 5.566 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.203 1.203 13 C -0.070 4.070 14 N -0.263 5.263 15 C -0.137 4.137 16 C -0.022 4.022 17 H 0.085 0.915 18 C -0.144 4.144 19 C -0.172 4.172 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.648 4.648 23 H 0.198 0.802 24 S 2.583 3.417 25 C -0.797 4.797 26 O -0.965 6.965 27 O -0.982 6.982 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.003 0.997 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.110 0.890 47 H 0.166 0.834 48 H 0.154 0.846 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.292 -6.281 16.548 19.547 hybrid contribution -0.275 0.403 -0.743 0.889 sum 8.017 -5.878 15.806 18.672 Atomic orbital electron populations 1.21597 0.94945 1.01119 1.00527 1.21157 0.95483 0.98313 0.95455 0.94213 1.18770 0.95568 0.93155 0.90712 1.21769 1.33821 1.08218 0.92912 0.93355 1.25786 0.95607 0.96123 1.01972 1.70102 1.40338 1.22635 1.23555 0.85650 0.77917 0.79012 0.79947 1.19235 1.20963 1.20349 1.22549 0.85866 1.02410 0.96135 1.61874 1.10496 1.07584 1.46311 1.22962 0.99858 0.90509 1.00388 1.21527 0.92874 0.95404 0.92430 0.91531 1.21708 0.98883 0.95276 0.98489 1.21750 0.98039 0.99745 0.97634 1.21333 0.94542 0.96259 1.01618 1.21323 1.01753 0.97603 0.93586 1.30030 1.09467 1.17033 1.08285 0.80204 1.08540 0.79696 0.79028 0.74404 1.30122 1.19825 1.15550 1.14226 1.93677 1.82723 1.72856 1.47208 1.93532 1.87508 1.68831 1.48330 0.92028 0.94036 0.93420 0.99672 0.97457 0.93350 0.94347 0.88140 0.94827 0.92560 0.92379 0.88179 0.90883 0.92755 0.91203 0.92832 0.89079 0.92215 0.88964 0.83427 0.84646 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 8.92 71.98 0.64 -4.07 16 2 C -0.09 -3.65 2.22 -10.79 -0.02 -3.68 16 3 H 0.04 1.81 6.59 -2.39 -0.02 1.80 16 4 C 0.05 2.97 3.99 29.85 0.12 3.09 16 5 C -0.53 -31.32 8.47 25.60 0.22 -31.10 16 6 H 0.05 2.81 7.06 -2.91 -0.02 2.79 16 7 C 0.00 0.14 5.46 84.66 0.46 0.61 16 8 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 9 Si 0.95 46.67 29.54 68.60 2.03 48.69 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.06 1.97 2.77 86.30 0.24 2.21 16 14 N -0.54 -18.70 2.57 -897.03 -2.30 -21.00 16 15 C 0.01 0.40 7.69 127.69 0.98 1.39 16 16 C 0.09 2.23 2.18 44.92 0.10 2.33 16 17 H 0.07 1.60 7.83 -2.38 -0.02 1.59 16 18 C -0.11 -2.23 4.86 30.59 0.15 -2.08 16 19 C -0.13 -3.46 5.18 30.59 0.16 -3.30 16 20 C -0.10 -2.26 5.92 30.59 0.18 -2.08 16 21 C -0.10 -2.60 4.81 30.59 0.15 -2.45 16 22 C -0.54 -11.29 2.33 30.59 0.07 -11.22 16 23 H 0.18 1.83 8.14 -2.39 -0.02 1.82 16 24 S 2.39 60.63 3.41 -56.49 -0.19 60.44 16 25 C -0.64 -8.78 10.40 113.37 1.18 -7.60 16 26 O -0.97 -35.95 14.50 -127.37 -1.85 -37.79 16 27 O -0.98 -29.48 17.02 -127.37 -2.17 -31.65 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.70 7.11 -2.39 -0.02 1.69 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H -0.02 -0.87 7.86 -2.39 -0.02 -0.89 16 32 H 0.01 0.42 7.54 -2.39 -0.02 0.41 16 33 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.04 1.17 8.05 -2.39 -0.02 1.15 16 35 H 0.10 3.28 3.86 -2.39 -0.01 3.27 16 36 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 37 H 0.06 2.07 2.30 -30.15 -0.07 2.01 16 38 H 0.06 2.51 6.78 -2.39 -0.02 2.49 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.53 6.44 -2.39 -0.02 1.52 16 41 H 0.05 1.92 5.06 -2.38 -0.01 1.90 16 42 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 2.20 7.35 -2.39 -0.02 2.18 16 46 H 0.09 1.63 7.01 -2.39 -0.02 1.61 16 47 H 0.15 1.63 7.17 -2.39 -0.02 1.61 16 48 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -81.13 364.45 1.28 -79.85 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.85 Total: 16.89 kcal Atomic # 6 Polarization: -62.59 SS G_CDS: 4.62 Total: -57.97 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -2.02 Total: -78.46 kcal Atomic # 8 Polarization: -65.43 SS G_CDS: -4.01 Total: -69.44 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Atomic # 16 Polarization: 60.63 SS G_CDS: -0.19 Total: 60.44 kcal Total: -81.13 1.28 -79.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602476310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.382 kcal (2) G-P(sol) polarization free energy of solvation -81.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds