Wall clock time and date at job start Tue Mar 31 2020 12:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47250 * 2 1 4 4 C 1.42901 * 114.00425 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.46396 * 30.00012 * 4 3 2 6 6 C 1.50694 * 109.47157 * 149.99900 * 4 3 2 7 7 O 1.21277 * 120.00223 * 19.86700 * 6 4 3 8 8 N 1.34784 * 119.99982 * 199.86310 * 6 4 3 9 9 C 1.46933 * 120.62854 * 355.58378 * 8 6 4 10 10 C 1.53195 * 108.77439 * 126.36686 * 9 8 6 11 11 C 1.53035 * 109.31223 * 54.63456 * 10 9 8 12 12 C 1.53042 * 109.54064 * 298.63110 * 11 10 9 13 13 H 1.08999 * 109.49895 * 301.38531 * 12 11 10 14 14 C 1.50694 * 109.50050 * 181.31868 * 12 11 10 15 15 H 1.08002 * 119.99803 * 240.00092 * 14 12 11 16 16 C 1.37872 * 120.00240 * 59.99761 * 14 12 11 17 17 N 1.31522 * 119.99994 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00405 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46833 * 60.00117 * 18 16 14 20 20 H 1.48498 * 109.47628 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47375 * 300.00813 * 18 16 14 22 22 C 1.46920 * 120.63077 * 175.55359 * 8 6 4 23 23 C 1.50697 * 109.47188 * 270.00412 * 4 3 2 24 24 C 1.38233 * 119.99937 * 314.29259 * 23 4 3 25 25 C 1.38235 * 119.99889 * 179.76666 * 24 23 4 26 26 C 1.38235 * 119.99864 * 0.50996 * 25 24 23 27 27 C 1.38231 * 120.00274 * 359.74713 * 26 25 24 28 28 C 1.38235 * 119.99955 * 134.56922 * 23 4 3 29 29 H 1.09002 * 109.47378 * 299.99822 * 1 2 3 30 30 H 1.08998 * 109.47160 * 59.99575 * 1 2 3 31 31 H 1.08998 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46898 * 239.99972 * 2 1 3 33 33 H 1.09003 * 109.47009 * 119.99983 * 2 1 3 34 34 H 1.09000 * 109.58775 * 6.58011 * 9 8 6 35 35 H 1.08998 * 109.58476 * 246.15600 * 9 8 6 36 36 H 1.08996 * 109.49413 * 174.58792 * 10 9 8 37 37 H 1.08998 * 109.49657 * 294.68330 * 10 9 8 38 38 H 1.09000 * 109.46058 * 58.65312 * 11 10 9 39 39 H 1.08997 * 109.46131 * 178.62876 * 11 10 9 40 40 H 0.96996 * 119.99981 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.58240 * 113.84858 * 22 8 6 42 42 H 1.08992 * 109.59121 * 353.42433 * 22 8 6 43 43 H 1.08000 * 120.00019 * 0.02562 * 24 23 4 44 44 H 1.07995 * 120.00328 * 180.23473 * 25 24 23 45 45 H 1.08006 * 120.00112 * 179.72068 * 26 25 24 46 46 H 1.08005 * 120.00482 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00111 * 0.02562 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.8347 2.7263 -0.7098 7 8 3.0322 3.6244 -0.8517 8 7 5.0879 2.8606 -1.1875 9 6 6.0987 1.8234 -0.9397 10 6 6.7001 1.3907 -2.2806 11 6 7.2308 2.6221 -3.0181 12 6 6.0775 3.5891 -3.2957 13 1 5.3157 3.0855 -3.8908 14 6 6.5953 4.7862 -4.0505 15 1 6.4982 5.7749 -3.6269 16 6 7.1932 4.6193 -5.2816 17 7 7.3110 3.4152 -5.7976 18 14 7.8344 6.1032 -6.2175 19 1 8.8708 6.7904 -5.4056 20 1 8.4273 5.6587 -7.5043 21 1 6.7145 7.0407 -6.4865 22 6 5.4689 4.0467 -1.9664 23 6 3.9311 1.4999 1.4216 24 6 3.3069 2.3101 2.3515 25 6 3.7627 2.3430 3.6562 26 6 4.8492 1.5736 4.0283 27 6 5.4767 0.7674 3.0971 28 6 5.0176 0.7306 1.7937 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.6314 0.9661 -0.4552 35 1 6.8842 2.2244 -0.2992 36 1 7.5177 0.6919 -2.1039 37 1 5.9322 0.9077 -2.8848 38 1 7.9809 3.1187 -2.4027 39 1 7.6812 2.3141 -3.9617 40 1 7.7313 3.2979 -6.6638 41 1 6.2032 4.6289 -1.4097 42 1 4.5863 4.6563 -2.1593 43 1 2.4606 2.9143 2.0598 44 1 3.2728 2.9731 4.3837 45 1 5.2082 1.6027 5.0465 46 1 6.3259 0.1666 3.3876 47 1 5.5082 0.1012 1.0659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:38 Heat of formation + Delta-G solvation = -58.084294 kcal Electronic energy + Delta-G solvation = -27508.131097 eV Core-core repulsion = 23848.692652 eV Total energy + Delta-G solvation = -3659.438444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.45712 -38.80788 -37.73052 -36.56543 -33.65349 -32.57210 -31.33145 -31.10852 -30.68546 -30.14794 -27.08007 -25.11582 -24.22231 -23.14311 -22.53681 -21.82369 -21.64703 -19.91037 -18.41656 -17.57389 -16.86660 -16.64114 -16.26594 -15.92135 -15.18855 -15.03083 -14.70112 -14.67186 -14.26783 -13.83008 -13.68282 -13.46992 -13.27895 -12.91077 -12.79684 -12.67657 -12.50566 -12.30531 -12.06959 -12.03348 -11.92203 -11.37929 -11.20029 -11.08038 -10.95567 -10.83384 -10.75457 -10.33565 -9.97139 -9.93580 -9.77266 -9.48462 -9.36099 -9.00842 -8.90188 -8.68417 -8.38906 -7.91131 -6.02615 -4.09702 1.15416 1.31257 2.93024 3.09717 3.31576 3.35817 3.39451 3.62846 4.02664 4.42533 4.54217 4.68044 4.83003 4.88630 4.94639 4.99939 5.03416 5.19393 5.25352 5.27101 5.30474 5.38986 5.50307 5.57296 5.60043 5.75046 5.79559 5.82586 5.94029 6.01609 6.06773 6.29820 6.31975 6.36592 6.40581 6.44236 6.46169 6.64440 6.77144 6.86937 6.91255 7.07423 7.16147 7.31674 7.67823 7.89000 7.97860 8.06048 8.36372 8.61802 8.93563 9.55207 11.02910 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.003607 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.895316 B = 7760.201318 C = 8403.798938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.350 6.350 4 C 0.116 3.884 5 H 0.089 0.911 6 C 0.518 3.482 7 O -0.527 6.527 8 N -0.597 5.597 9 C 0.104 3.896 10 C -0.136 4.136 11 C -0.112 4.112 12 C 0.040 3.960 13 H 0.030 0.970 14 C -0.515 4.515 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.119 3.881 23 C -0.109 4.109 24 C -0.083 4.083 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.122 4.122 28 C -0.109 4.109 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.096 0.904 40 H 0.261 0.739 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 -10.794 16.926 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.268 6.268 4 C 0.054 3.946 5 H 0.106 0.894 6 C 0.304 3.696 7 O -0.403 6.403 8 N -0.331 5.331 9 C -0.019 4.019 10 C -0.175 4.175 11 C -0.150 4.150 12 C 0.021 3.979 13 H 0.048 0.952 14 C -0.553 4.553 15 H 0.075 0.925 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.002 4.002 23 C -0.110 4.110 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.134 4.134 27 C -0.140 4.140 28 C -0.127 4.127 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.646 -10.231 16.674 20.361 hybrid contribution 0.717 0.410 -0.546 0.990 sum -4.929 -9.820 16.127 19.515 Atomic orbital electron populations 1.21711 0.93429 1.02070 1.03392 1.22599 0.95902 0.83735 1.00113 1.88055 1.17880 1.26197 1.94699 1.20759 0.83475 0.97998 0.92356 0.89374 1.19922 0.82392 0.88019 0.79312 1.90673 1.50724 1.41356 1.57584 1.48205 1.09354 1.22691 1.52820 1.21967 0.91321 0.90231 0.98373 1.22036 0.99831 1.00159 0.95440 1.21628 0.99179 0.93593 1.00607 1.18977 0.93825 0.95207 0.89865 0.95224 1.21034 1.38513 0.92910 1.02854 0.92492 1.24925 0.95784 0.95810 0.97216 1.69861 1.44138 1.20864 1.17951 0.86633 0.79204 0.82993 0.79039 1.20249 1.21311 1.20206 1.22031 0.99809 0.85206 0.93109 1.20050 0.97272 0.98699 0.94982 1.21074 0.99347 0.97015 0.92651 1.21174 0.97200 0.99597 0.96187 1.21191 0.96044 0.96663 0.99494 1.21083 1.00127 0.99658 0.93174 1.21128 0.96016 0.98965 0.96605 0.91836 0.91578 0.91134 0.93138 0.93299 0.91271 0.91627 0.92366 0.92365 0.94511 0.88547 0.92922 0.92584 0.90243 0.85276 0.85958 0.86113 0.85829 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.61 6.46 37.16 0.24 0.85 16 3 O -0.35 -5.42 9.14 -54.31 -0.50 -5.92 16 4 C 0.12 1.74 2.00 -29.04 -0.06 1.68 16 5 H 0.09 1.15 6.26 -51.93 -0.32 0.83 16 6 C 0.52 10.00 6.87 -10.99 -0.08 9.92 16 7 O -0.53 -12.16 16.05 -13.52 -0.22 -12.38 16 8 N -0.60 -11.37 2.97 -172.77 -0.51 -11.88 16 9 C 0.10 1.62 5.77 -3.71 -0.02 1.60 16 10 C -0.14 -2.37 6.08 -26.61 -0.16 -2.53 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.62 16 12 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 14 C -0.51 -13.94 8.56 -34.45 -0.29 -14.23 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.81 11.31 55.43 0.63 -24.18 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.12 2.62 5.64 -3.71 -0.02 2.60 16 23 C -0.11 -1.45 4.68 -104.63 -0.49 -1.94 16 24 C -0.08 -1.11 9.31 -39.58 -0.37 -1.48 16 25 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 26 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 28 C -0.11 -1.21 8.57 -39.58 -0.34 -1.55 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.87 2.98 -51.93 -0.15 0.72 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.08 1.89 7.03 -51.93 -0.37 1.52 16 43 H 0.13 1.88 7.94 -52.49 -0.42 1.46 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 45 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 47 H 0.13 1.16 6.38 -52.49 -0.33 0.83 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -31.41 373.56 -10.19 -41.61 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.37 Total: 2.28 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.83 Total: -11.23 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.11 Total: -36.07 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.71 Total: -18.30 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.41 -10.19 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.478 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds