Wall clock time and date at job start Tue Mar 31 2020 12:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47250 * 2 1 4 4 C 1.42901 * 114.00425 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.46396 * 30.00012 * 4 3 2 6 6 C 1.50694 * 109.47157 * 149.99900 * 4 3 2 7 7 O 1.21277 * 120.00223 * 19.86700 * 6 4 3 8 8 N 1.34784 * 119.99982 * 199.86310 * 6 4 3 9 9 C 1.46933 * 120.62854 * 355.58378 * 8 6 4 10 10 C 1.53195 * 108.77439 * 126.36686 * 9 8 6 11 11 C 1.53035 * 109.31223 * 54.63456 * 10 9 8 12 12 C 1.53042 * 109.54064 * 298.63110 * 11 10 9 13 13 H 1.08999 * 109.49895 * 301.38531 * 12 11 10 14 14 C 1.50694 * 109.50050 * 181.31868 * 12 11 10 15 15 H 1.08002 * 119.99803 * 240.00092 * 14 12 11 16 16 C 1.37872 * 120.00240 * 59.99761 * 14 12 11 17 17 N 1.31522 * 119.99994 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00405 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46833 * 60.00117 * 18 16 14 20 20 H 1.48498 * 109.47628 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47375 * 300.00813 * 18 16 14 22 22 C 1.46920 * 120.63077 * 175.55359 * 8 6 4 23 23 C 1.50697 * 109.47188 * 270.00412 * 4 3 2 24 24 C 1.38233 * 119.99937 * 314.29259 * 23 4 3 25 25 C 1.38235 * 119.99889 * 179.76666 * 24 23 4 26 26 C 1.38235 * 119.99864 * 0.50996 * 25 24 23 27 27 C 1.38231 * 120.00274 * 359.74713 * 26 25 24 28 28 C 1.38235 * 119.99955 * 134.56922 * 23 4 3 29 29 H 1.09002 * 109.47378 * 299.99822 * 1 2 3 30 30 H 1.08998 * 109.47160 * 59.99575 * 1 2 3 31 31 H 1.08998 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46898 * 239.99972 * 2 1 3 33 33 H 1.09003 * 109.47009 * 119.99983 * 2 1 3 34 34 H 1.09000 * 109.58775 * 6.58011 * 9 8 6 35 35 H 1.08998 * 109.58476 * 246.15600 * 9 8 6 36 36 H 1.08996 * 109.49413 * 174.58792 * 10 9 8 37 37 H 1.08998 * 109.49657 * 294.68330 * 10 9 8 38 38 H 1.09000 * 109.46058 * 58.65312 * 11 10 9 39 39 H 1.08997 * 109.46131 * 178.62876 * 11 10 9 40 40 H 0.96996 * 119.99981 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.58240 * 113.84858 * 22 8 6 42 42 H 1.08992 * 109.59121 * 353.42433 * 22 8 6 43 43 H 1.08000 * 120.00019 * 0.02562 * 24 23 4 44 44 H 1.07995 * 120.00328 * 180.23473 * 25 24 23 45 45 H 1.08006 * 120.00112 * 179.72068 * 26 25 24 46 46 H 1.08005 * 120.00482 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00111 * 0.02562 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.8347 2.7263 -0.7098 7 8 3.0322 3.6244 -0.8517 8 7 5.0879 2.8606 -1.1875 9 6 6.0987 1.8234 -0.9397 10 6 6.7001 1.3907 -2.2806 11 6 7.2308 2.6221 -3.0181 12 6 6.0775 3.5891 -3.2957 13 1 5.3157 3.0855 -3.8908 14 6 6.5953 4.7862 -4.0505 15 1 6.4982 5.7749 -3.6269 16 6 7.1932 4.6193 -5.2816 17 7 7.3110 3.4152 -5.7976 18 14 7.8344 6.1032 -6.2175 19 1 8.8708 6.7904 -5.4056 20 1 8.4273 5.6587 -7.5043 21 1 6.7145 7.0407 -6.4865 22 6 5.4689 4.0467 -1.9664 23 6 3.9311 1.4999 1.4216 24 6 3.3069 2.3101 2.3515 25 6 3.7627 2.3430 3.6562 26 6 4.8492 1.5736 4.0283 27 6 5.4767 0.7674 3.0971 28 6 5.0176 0.7306 1.7937 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.6314 0.9661 -0.4552 35 1 6.8842 2.2244 -0.2992 36 1 7.5177 0.6919 -2.1039 37 1 5.9322 0.9077 -2.8848 38 1 7.9809 3.1187 -2.4027 39 1 7.6812 2.3141 -3.9617 40 1 7.7313 3.2979 -6.6638 41 1 6.2032 4.6289 -1.4097 42 1 4.5863 4.6563 -2.1593 43 1 2.4606 2.9143 2.0598 44 1 3.2728 2.9731 4.3837 45 1 5.2082 1.6027 5.0465 46 1 6.3259 0.1666 3.3876 47 1 5.5082 0.1012 1.0659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:36 Heat of formation + Delta-G solvation = -74.822556 kcal Electronic energy + Delta-G solvation = -27508.856922 eV Core-core repulsion = 23848.692652 eV Total energy + Delta-G solvation = -3660.164270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.72579 -39.97085 -38.86867 -38.11633 -35.46405 -33.74414 -32.93184 -32.12336 -31.70827 -31.52706 -28.34493 -26.96986 -25.74377 -24.03254 -23.51065 -23.20033 -22.81119 -21.46442 -19.97634 -18.75560 -18.32158 -17.95137 -17.77779 -16.87234 -16.63245 -16.60895 -15.99033 -15.63451 -15.53154 -15.25562 -15.09218 -14.71708 -14.57127 -14.32247 -14.15887 -13.79557 -13.64755 -13.57180 -13.47648 -13.25543 -12.86632 -12.82979 -12.71367 -12.61825 -12.26630 -12.13102 -11.99772 -11.87951 -11.79646 -11.60551 -11.31803 -11.03666 -10.81618 -10.58887 -10.43489 -9.83034 -9.71054 -9.55068 -8.11189 -6.26290 0.29974 0.48834 1.41154 1.42893 1.48090 1.51360 1.77101 2.42509 2.72348 2.90291 3.15341 3.50332 3.59694 3.71135 4.01040 4.10171 4.14365 4.17359 4.20194 4.29146 4.31139 4.35527 4.45107 4.50184 4.55516 4.60413 4.67641 4.77039 4.80741 4.83411 4.93458 4.98671 5.01408 5.10389 5.13982 5.22721 5.25424 5.44035 5.51597 5.52494 5.58623 5.60500 5.60865 5.91998 6.05044 6.07666 6.13612 6.33505 6.47130 6.81896 7.11167 7.41655 8.92373 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.003607 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.895316 B = 7760.201318 C = 8403.798938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.382 6.382 4 C 0.127 3.873 5 H 0.112 0.888 6 C 0.509 3.491 7 O -0.579 6.579 8 N -0.600 5.600 9 C 0.105 3.895 10 C -0.128 4.128 11 C -0.105 4.105 12 C 0.042 3.958 13 H -0.013 1.013 14 C -0.541 4.541 15 H 0.051 0.949 16 C 0.020 3.980 17 N -0.911 5.911 18 Si 0.954 3.046 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.278 1.278 22 C 0.131 3.869 23 C -0.125 4.125 24 C -0.108 4.108 25 C -0.130 4.130 26 C -0.112 4.112 27 C -0.118 4.118 28 C -0.110 4.110 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.262 0.738 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.101 0.899 44 H 0.136 0.864 45 H 0.150 0.850 46 H 0.157 0.843 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 -12.991 19.184 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.300 6.300 4 C 0.065 3.935 5 H 0.129 0.871 6 C 0.297 3.703 7 O -0.458 6.458 8 N -0.332 5.332 9 C -0.016 4.016 10 C -0.166 4.166 11 C -0.143 4.143 12 C 0.023 3.977 13 H 0.005 0.995 14 C -0.579 4.579 15 H 0.069 0.931 16 C -0.179 4.179 17 N -0.550 5.550 18 Si 0.780 3.220 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.203 1.203 22 C 0.009 3.991 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.148 4.148 26 C -0.130 4.130 27 C -0.135 4.135 28 C -0.128 4.128 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.154 0.846 45 H 0.168 0.832 46 H 0.174 0.826 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.867 -12.461 18.948 23.005 hybrid contribution 0.124 1.093 -1.217 1.640 sum -3.742 -11.368 17.731 21.392 Atomic orbital electron populations 1.21749 0.92565 1.03654 1.02447 1.22865 0.96693 0.82108 1.01329 1.88030 1.18230 1.28875 1.94909 1.20644 0.83769 0.95658 0.93382 0.87097 1.20865 0.81674 0.89159 0.78614 1.90634 1.52116 1.43557 1.59537 1.48263 1.10381 1.22490 1.52063 1.22223 0.91088 0.90526 0.97755 1.21951 1.00734 0.98374 0.95567 1.21419 0.97937 0.95077 0.99905 1.18874 0.93691 0.94886 0.90225 0.99452 1.21389 1.39074 0.93565 1.03903 0.93115 1.25650 0.95912 0.98428 0.97953 1.69990 1.44419 1.22443 1.18150 0.85675 0.78638 0.79763 0.77957 1.19269 1.20604 1.20329 1.21595 0.98377 0.86442 0.92684 1.19951 0.98727 1.00288 0.93600 1.21021 0.99530 0.97884 0.94218 1.21386 0.97860 1.00128 0.95392 1.21585 0.94934 0.95448 1.01048 1.21503 1.00479 0.99158 0.92387 1.21378 0.94954 0.98538 0.97921 0.92257 0.93064 0.88215 0.92223 0.91553 0.87496 0.89814 0.88532 0.93424 0.94302 0.91612 0.92855 0.92015 0.93190 0.88093 0.84600 0.83194 0.82578 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 10.28 71.98 0.74 -2.03 16 2 C 0.05 0.99 6.46 71.98 0.46 1.46 16 3 O -0.38 -11.98 9.14 -130.74 -1.19 -13.17 16 4 C 0.13 3.73 2.00 29.10 0.06 3.79 16 5 H 0.11 2.64 6.26 -2.38 -0.01 2.62 16 6 C 0.51 20.13 6.87 87.65 0.60 20.74 16 7 O -0.58 -28.39 16.05 15.22 0.24 -28.15 16 8 N -0.60 -22.92 2.97 -818.91 -2.43 -25.35 16 9 C 0.11 3.01 5.77 86.36 0.50 3.50 16 10 C -0.13 -4.21 6.08 30.67 0.19 -4.02 16 11 C -0.11 -4.68 4.96 30.62 0.15 -4.53 16 12 C 0.04 2.17 2.25 -11.46 -0.03 2.15 16 13 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 14 C -0.54 -30.36 8.56 25.60 0.22 -30.14 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 16 C 0.02 1.11 5.30 84.65 0.45 1.56 16 17 N -0.91 -51.97 11.31 21.45 0.24 -51.73 16 18 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 C 0.13 6.03 5.64 86.37 0.49 6.52 16 23 C -0.12 -3.12 4.68 -19.87 -0.09 -3.21 16 24 C -0.11 -2.88 9.31 22.27 0.21 -2.68 16 25 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 26 C -0.11 -1.77 10.05 22.27 0.22 -1.55 16 27 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 28 C -0.11 -2.00 8.57 22.27 0.19 -1.81 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 2.27 2.98 -2.39 -0.01 2.26 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 36 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 3.35 6.04 -2.39 -0.01 3.34 16 40 H 0.26 14.24 8.31 -92.71 -0.77 13.46 16 41 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.05 2.55 7.03 -2.39 -0.02 2.53 16 43 H 0.10 3.17 7.94 -2.91 -0.02 3.14 16 44 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 46 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.15 1.93 6.38 -2.91 -0.02 1.91 16 Total: -1.00 -73.66 373.56 4.64 -69.02 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.95 Total: 17.72 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.81 Total: -14.20 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -2.19 Total: -77.08 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.95 Total: -41.32 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -73.66 4.64 -69.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.806 kcal (2) G-P(sol) polarization free energy of solvation -73.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds