Wall clock time and date at job start Tue Mar 31 2020 12:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47049 * 2 1 4 4 C 1.42901 * 113.99806 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46836 * 30.00351 * 4 3 2 6 6 C 1.50697 * 109.47289 * 270.00515 * 4 3 2 7 7 O 1.21285 * 120.00155 * 341.47699 * 6 4 3 8 8 N 1.34782 * 120.00227 * 161.48086 * 6 4 3 9 9 C 1.46924 * 120.62756 * 354.51886 * 8 6 4 10 10 C 1.53193 * 108.77438 * 126.39051 * 9 8 6 11 11 C 1.53039 * 109.31028 * 54.63614 * 10 9 8 12 12 C 1.53042 * 109.53785 * 298.63129 * 11 10 9 13 13 H 1.09001 * 109.49904 * 301.38548 * 12 11 10 14 14 C 1.50701 * 109.49813 * 181.31938 * 12 11 10 15 15 H 1.08008 * 120.00012 * 240.06202 * 14 12 11 16 16 C 1.37869 * 120.00075 * 59.78845 * 14 12 11 17 17 N 1.31511 * 120.00320 * 0.27671 * 16 14 12 18 18 Si 1.86800 * 120.00208 * 180.27461 * 16 14 12 19 19 H 1.48502 * 109.47120 * 60.00167 * 18 16 14 20 20 H 1.48501 * 109.47681 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47251 * 300.00306 * 18 16 14 22 22 C 1.46929 * 120.60332 * 174.49989 * 8 6 4 23 23 C 1.50695 * 109.47277 * 150.00101 * 4 3 2 24 24 C 1.38236 * 119.99686 * 42.75543 * 23 4 3 25 25 C 1.38238 * 119.99844 * 179.81148 * 24 23 4 26 26 C 1.38233 * 119.99970 * 0.42172 * 25 24 23 27 27 C 1.38235 * 120.00052 * 359.81117 * 26 25 24 28 28 C 1.38233 * 120.00061 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47101 * 299.99975 * 1 2 3 30 30 H 1.08999 * 109.47056 * 59.99677 * 1 2 3 31 31 H 1.09003 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46624 * 240.00057 * 2 1 3 33 33 H 1.08999 * 109.47056 * 120.00323 * 2 1 3 34 34 H 1.09003 * 109.58907 * 6.60040 * 9 8 6 35 35 H 1.08999 * 109.70325 * 246.24993 * 9 8 6 36 36 H 1.08996 * 109.49869 * 294.68563 * 10 9 8 37 37 H 1.09002 * 109.49499 * 174.58364 * 10 9 8 38 38 H 1.08996 * 109.46216 * 178.61174 * 11 10 9 39 39 H 1.08998 * 109.46596 * 58.65466 * 11 10 9 40 40 H 0.96995 * 120.00800 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.56217 * 113.80711 * 22 8 6 42 42 H 1.08999 * 109.61807 * 353.37417 * 22 8 6 43 43 H 1.07999 * 120.00292 * 359.97438 * 24 23 4 44 44 H 1.08004 * 119.99855 * 180.21307 * 25 24 23 45 45 H 1.08001 * 119.99939 * 179.78819 * 26 25 24 46 46 H 1.07995 * 119.99757 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.00067 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9311 1.4998 1.4216 7 8 3.1699 1.7744 2.3250 8 7 5.2244 1.2304 1.6886 9 6 6.1306 0.7802 0.6233 10 6 7.3591 1.6951 0.6016 11 6 7.9924 1.7251 1.9945 12 6 6.9876 2.2895 3.0015 13 1 6.6894 3.2921 2.6950 14 6 7.6230 2.3489 4.3667 15 1 7.1909 1.7963 5.1880 16 6 8.7591 3.1041 4.5660 17 7 9.2852 3.7771 3.5661 18 14 9.5511 3.1717 6.2564 19 1 9.9531 1.8031 6.6698 20 1 10.7502 4.0464 6.2068 21 1 8.5796 3.7195 7.2368 22 6 5.7543 1.3819 3.0506 23 6 3.8348 2.7262 -0.7098 24 6 3.1416 3.8996 -0.4787 25 6 3.5146 5.0620 -1.1274 26 6 4.5753 5.0490 -2.0137 27 6 5.2655 3.8745 -2.2484 28 6 4.8947 2.7129 -1.5972 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.6191 0.8323 -0.3379 35 1 6.4427 -0.2463 0.8158 36 1 7.0571 2.7031 0.3175 37 1 8.0831 1.3149 -0.1191 38 1 8.8810 2.3559 1.9759 39 1 8.2717 0.7134 2.2884 40 1 10.0843 4.3087 3.7063 41 1 6.0351 0.4049 3.4437 42 1 4.9952 1.8314 3.6907 43 1 2.3102 3.9089 0.2106 44 1 2.9751 5.9796 -0.9442 45 1 4.8645 5.9563 -2.5231 46 1 6.0939 3.8643 -2.9412 47 1 5.4336 1.7953 -1.7809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:48 Heat of formation + Delta-G solvation = -58.244054 kcal Electronic energy + Delta-G solvation = -27840.313150 eV Core-core repulsion = 24180.867778 eV Total energy + Delta-G solvation = -3659.445372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42152 -38.67152 -37.75559 -36.47833 -33.64967 -32.60839 -31.32654 -31.00218 -30.54495 -30.10165 -26.99534 -25.11086 -24.23432 -23.11030 -22.31022 -21.78810 -21.62322 -19.93793 -18.41076 -17.45238 -16.93371 -16.68591 -16.21573 -15.67114 -15.24998 -14.97927 -14.64342 -14.47400 -14.29283 -13.82138 -13.65030 -13.36782 -13.21560 -12.82652 -12.78182 -12.57802 -12.48183 -12.27708 -12.05992 -12.02382 -11.81949 -11.34982 -11.05534 -10.99804 -10.93657 -10.80776 -10.69456 -10.33115 -10.23315 -9.95472 -9.79658 -9.47280 -9.20467 -8.87136 -8.81625 -8.52274 -8.38030 -7.90646 -6.01681 -4.08994 1.31866 1.50010 2.94996 3.24558 3.31305 3.35683 3.39230 3.66348 3.98763 4.42553 4.65575 4.73461 4.84167 4.97880 5.02115 5.07635 5.15342 5.22299 5.26879 5.28672 5.34798 5.52666 5.56912 5.60442 5.67868 5.77338 5.83076 5.96407 6.01656 6.07064 6.11555 6.31960 6.38339 6.47169 6.49323 6.57382 6.58728 6.65086 6.79480 6.92801 7.02653 7.07881 7.17263 7.32980 7.68665 7.90533 7.98918 8.07284 8.37101 8.61005 8.94230 9.55802 11.03682 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.004258 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.278183 B = 6574.228638 C = 7599.907427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.119 3.881 5 H 0.086 0.914 6 C 0.492 3.508 7 O -0.532 6.532 8 N -0.597 5.597 9 C 0.102 3.898 10 C -0.133 4.133 11 C -0.111 4.111 12 C 0.042 3.958 13 H 0.029 0.971 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.118 3.882 23 C -0.084 4.084 24 C -0.081 4.081 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.120 4.120 28 C -0.103 4.103 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.035 0.965 40 H 0.261 0.739 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 -5.020 -14.541 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.057 3.943 5 H 0.103 0.897 6 C 0.278 3.722 7 O -0.409 6.409 8 N -0.331 5.331 9 C -0.021 4.021 10 C -0.172 4.172 11 C -0.149 4.149 12 C 0.023 3.977 13 H 0.047 0.953 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.003 4.003 23 C -0.084 4.084 24 C -0.099 4.099 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.138 4.138 28 C -0.121 4.121 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.285 -4.603 -14.087 18.039 hybrid contribution 0.857 -0.185 0.920 1.271 sum -9.428 -4.788 -13.167 16.887 Atomic orbital electron populations 1.21699 0.93410 1.02113 1.03260 1.22576 0.95983 0.83671 1.00008 1.87998 1.17987 1.26490 1.94553 1.20742 0.83316 0.97011 0.93204 0.89676 1.20903 0.82507 0.77951 0.90846 1.90667 1.55067 1.48288 1.46838 1.48303 1.08248 1.65191 1.11359 1.21926 0.92077 0.98394 0.89682 1.21992 0.95512 0.99066 1.00583 1.21617 1.02006 1.00225 0.91084 1.18955 0.89563 0.94020 0.95205 0.95282 1.21035 1.10547 1.29129 0.94654 0.92570 1.24919 0.96900 0.95138 0.96742 1.69857 1.21838 1.30412 1.30584 0.86650 0.78727 0.77959 0.84621 1.20267 1.21303 1.20231 1.22016 0.97946 1.00263 0.80083 1.19276 0.97411 0.93712 0.98032 1.21028 0.98986 0.91690 0.98219 1.21156 0.97709 0.98025 0.97185 1.21185 0.95763 0.98038 0.98120 1.21040 0.99874 0.92638 1.00214 1.20989 0.96275 0.98897 0.95976 0.91536 0.91914 0.91160 0.93371 0.93162 0.91310 0.91855 0.92040 0.92526 0.88574 0.94650 0.92931 0.92692 0.90406 0.85401 0.85954 0.86076 0.85778 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.05 0.65 6.46 37.16 0.24 0.89 16 3 O -0.35 -5.36 9.02 -54.42 -0.49 -5.85 16 4 C 0.12 1.80 2.01 -29.04 -0.06 1.74 16 5 H 0.09 1.05 6.13 -51.93 -0.32 0.74 16 6 C 0.49 9.36 6.86 -10.98 -0.08 9.29 16 7 O -0.53 -12.06 16.04 -13.64 -0.22 -12.28 16 8 N -0.60 -11.29 2.97 -172.77 -0.51 -11.80 16 9 C 0.10 1.58 5.96 -3.71 -0.02 1.56 16 10 C -0.13 -2.34 6.08 -26.61 -0.16 -2.50 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 12 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 14 C -0.52 -14.00 8.57 -34.44 -0.30 -14.30 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -24.90 11.31 55.43 0.63 -24.28 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.12 2.59 5.64 -3.71 -0.02 2.57 16 23 C -0.08 -1.24 4.84 -104.63 -0.51 -1.75 16 24 C -0.08 -1.23 9.33 -39.58 -0.37 -1.60 16 25 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 26 C -0.11 -1.36 10.05 -39.58 -0.40 -1.76 16 27 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 28 C -0.10 -1.32 8.74 -39.58 -0.35 -1.67 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.86 2.94 -51.93 -0.15 0.71 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 2.43 6.03 -51.93 -0.31 2.12 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.86 7.04 -51.93 -0.37 1.49 16 43 H 0.13 2.04 7.86 -52.49 -0.41 1.63 16 44 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.12 1.32 6.27 -52.49 -0.33 0.99 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -31.57 373.57 -10.19 -41.76 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.35 Total: 3.27 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.86 Total: -12.58 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.11 Total: -36.08 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.71 Total: -18.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.57 -10.19 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.485 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds