Wall clock time and date at job start Tue Mar 31 2020 12:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47049 * 2 1 4 4 C 1.42901 * 113.99806 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46836 * 30.00351 * 4 3 2 6 6 C 1.50697 * 109.47289 * 270.00515 * 4 3 2 7 7 O 1.21285 * 120.00155 * 341.47699 * 6 4 3 8 8 N 1.34782 * 120.00227 * 161.48086 * 6 4 3 9 9 C 1.46924 * 120.62756 * 354.51886 * 8 6 4 10 10 C 1.53193 * 108.77438 * 126.39051 * 9 8 6 11 11 C 1.53039 * 109.31028 * 54.63614 * 10 9 8 12 12 C 1.53042 * 109.53785 * 298.63129 * 11 10 9 13 13 H 1.09001 * 109.49904 * 301.38548 * 12 11 10 14 14 C 1.50701 * 109.49813 * 181.31938 * 12 11 10 15 15 H 1.08008 * 120.00012 * 240.06202 * 14 12 11 16 16 C 1.37869 * 120.00075 * 59.78845 * 14 12 11 17 17 N 1.31511 * 120.00320 * 0.27671 * 16 14 12 18 18 Si 1.86800 * 120.00208 * 180.27461 * 16 14 12 19 19 H 1.48502 * 109.47120 * 60.00167 * 18 16 14 20 20 H 1.48501 * 109.47681 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47251 * 300.00306 * 18 16 14 22 22 C 1.46929 * 120.60332 * 174.49989 * 8 6 4 23 23 C 1.50695 * 109.47277 * 150.00101 * 4 3 2 24 24 C 1.38236 * 119.99686 * 42.75543 * 23 4 3 25 25 C 1.38238 * 119.99844 * 179.81148 * 24 23 4 26 26 C 1.38233 * 119.99970 * 0.42172 * 25 24 23 27 27 C 1.38235 * 120.00052 * 359.81117 * 26 25 24 28 28 C 1.38233 * 120.00061 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47101 * 299.99975 * 1 2 3 30 30 H 1.08999 * 109.47056 * 59.99677 * 1 2 3 31 31 H 1.09003 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46624 * 240.00057 * 2 1 3 33 33 H 1.08999 * 109.47056 * 120.00323 * 2 1 3 34 34 H 1.09003 * 109.58907 * 6.60040 * 9 8 6 35 35 H 1.08999 * 109.70325 * 246.24993 * 9 8 6 36 36 H 1.08996 * 109.49869 * 294.68563 * 10 9 8 37 37 H 1.09002 * 109.49499 * 174.58364 * 10 9 8 38 38 H 1.08996 * 109.46216 * 178.61174 * 11 10 9 39 39 H 1.08998 * 109.46596 * 58.65466 * 11 10 9 40 40 H 0.96995 * 120.00800 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.56217 * 113.80711 * 22 8 6 42 42 H 1.08999 * 109.61807 * 353.37417 * 22 8 6 43 43 H 1.07999 * 120.00292 * 359.97438 * 24 23 4 44 44 H 1.08004 * 119.99855 * 180.21307 * 25 24 23 45 45 H 1.08001 * 119.99939 * 179.78819 * 26 25 24 46 46 H 1.07995 * 119.99757 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.00067 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9311 1.4998 1.4216 7 8 3.1699 1.7744 2.3250 8 7 5.2244 1.2304 1.6886 9 6 6.1306 0.7802 0.6233 10 6 7.3591 1.6951 0.6016 11 6 7.9924 1.7251 1.9945 12 6 6.9876 2.2895 3.0015 13 1 6.6894 3.2921 2.6950 14 6 7.6230 2.3489 4.3667 15 1 7.1909 1.7963 5.1880 16 6 8.7591 3.1041 4.5660 17 7 9.2852 3.7771 3.5661 18 14 9.5511 3.1717 6.2564 19 1 9.9531 1.8031 6.6698 20 1 10.7502 4.0464 6.2068 21 1 8.5796 3.7195 7.2368 22 6 5.7543 1.3819 3.0506 23 6 3.8348 2.7262 -0.7098 24 6 3.1416 3.8996 -0.4787 25 6 3.5146 5.0620 -1.1274 26 6 4.5753 5.0490 -2.0137 27 6 5.2655 3.8745 -2.2484 28 6 4.8947 2.7129 -1.5972 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.6191 0.8323 -0.3379 35 1 6.4427 -0.2463 0.8158 36 1 7.0571 2.7031 0.3175 37 1 8.0831 1.3149 -0.1191 38 1 8.8810 2.3559 1.9759 39 1 8.2717 0.7134 2.2884 40 1 10.0843 4.3087 3.7063 41 1 6.0351 0.4049 3.4437 42 1 4.9952 1.8314 3.6907 43 1 2.3102 3.9089 0.2106 44 1 2.9751 5.9796 -0.9442 45 1 4.8645 5.9563 -2.5231 46 1 6.0939 3.8643 -2.9412 47 1 5.4336 1.7953 -1.7809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:47 Heat of formation + Delta-G solvation = -75.084404 kcal Electronic energy + Delta-G solvation = -27841.043402 eV Core-core repulsion = 24180.867778 eV Total energy + Delta-G solvation = -3660.175624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74072 -39.87279 -38.98614 -37.99843 -35.46150 -33.81421 -32.95057 -32.18341 -31.65317 -31.45868 -28.31738 -26.95976 -25.75110 -24.07907 -23.35622 -23.27940 -22.83865 -21.51089 -19.93376 -18.82988 -18.34161 -17.93050 -17.81476 -16.78102 -16.63990 -16.56388 -15.99537 -15.74400 -15.51288 -15.17608 -15.00282 -14.79620 -14.61802 -14.37062 -14.14980 -13.76394 -13.59802 -13.56783 -13.39304 -13.17488 -12.93403 -12.86105 -12.70210 -12.61776 -12.26894 -12.11114 -12.01434 -11.86721 -11.72786 -11.59011 -11.46672 -11.21552 -10.83459 -10.47238 -10.39394 -9.81448 -9.66755 -9.53042 -8.10812 -6.26231 0.29930 0.50017 1.40517 1.42167 1.48727 1.51646 1.92233 2.42214 2.57395 2.91756 3.15412 3.46792 3.60836 3.73443 4.00364 4.09249 4.14017 4.15297 4.23586 4.27258 4.30312 4.36598 4.43252 4.50637 4.57838 4.60668 4.67924 4.78233 4.80512 4.84591 4.94558 4.99974 5.01429 5.11477 5.13525 5.22651 5.27867 5.45427 5.52192 5.54535 5.56342 5.60649 5.61007 5.93182 6.00872 6.08133 6.14529 6.33968 6.49343 6.82259 7.12530 7.41707 8.92518 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.004258 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.278183 B = 6574.228638 C = 7599.907427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 O -0.373 6.373 4 C 0.129 3.871 5 H 0.122 0.878 6 C 0.485 3.515 7 O -0.581 6.581 8 N -0.599 5.599 9 C 0.101 3.899 10 C -0.124 4.124 11 C -0.104 4.104 12 C 0.045 3.955 13 H -0.018 1.018 14 C -0.541 4.541 15 H 0.050 0.950 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.953 3.047 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.278 1.278 22 C 0.130 3.870 23 C -0.103 4.103 24 C -0.110 4.110 25 C -0.134 4.134 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.105 4.105 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.262 0.738 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.135 0.865 45 H 0.148 0.852 46 H 0.155 0.845 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -6.558 -17.116 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.291 6.291 4 C 0.068 3.932 5 H 0.139 0.861 6 C 0.273 3.727 7 O -0.461 6.461 8 N -0.332 5.332 9 C -0.020 4.020 10 C -0.161 4.161 11 C -0.142 4.142 12 C 0.026 3.974 13 H 0.000 1.000 14 C -0.580 4.580 15 H 0.068 0.932 16 C -0.179 4.179 17 N -0.549 5.549 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.204 1.204 22 C 0.008 3.992 23 C -0.104 4.104 24 C -0.128 4.128 25 C -0.152 4.152 26 C -0.134 4.134 27 C -0.138 4.138 28 C -0.123 4.123 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.153 0.847 45 H 0.166 0.834 46 H 0.173 0.827 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.248 -6.160 -16.693 20.053 hybrid contribution 0.509 0.359 1.726 1.835 sum -8.740 -5.801 -14.967 18.277 Atomic orbital electron populations 1.21724 0.92213 1.03641 1.02590 1.22867 0.97124 0.82420 1.00806 1.88008 1.18110 1.28627 1.94352 1.20725 0.83566 0.98670 0.90218 0.86071 1.21823 0.81992 0.76440 0.92410 1.90633 1.56404 1.50281 1.48829 1.48366 1.08968 1.65058 1.10810 1.22212 0.90783 0.98872 0.90177 1.21878 0.96991 0.99187 0.98091 1.21405 1.00176 0.99185 0.93471 1.18835 0.91225 0.92302 0.95053 0.99989 1.21397 1.11121 1.29616 0.95844 0.93158 1.25645 0.97330 0.94737 1.00210 1.69990 1.22029 1.30669 1.32220 0.85692 0.77771 0.78380 0.80289 1.19201 1.20616 1.20395 1.21578 0.95935 0.99635 0.82096 1.19408 0.98565 0.93222 0.99176 1.21043 0.99389 0.93276 0.99109 1.21391 0.98507 0.97893 0.97400 1.21575 0.94896 0.99481 0.97404 1.21489 1.00210 0.92090 1.00024 1.21310 0.95373 1.00489 0.95105 0.93495 0.91279 0.88508 0.90218 0.94488 0.87576 0.89340 0.93589 0.88658 0.91760 0.94280 0.92887 0.91806 0.93527 0.87848 0.84712 0.83425 0.82686 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.04 0.98 6.46 71.98 0.46 1.45 16 3 O -0.37 -11.24 9.02 -130.63 -1.18 -12.42 16 4 C 0.13 3.75 2.01 29.10 0.06 3.81 16 5 H 0.12 2.54 6.13 -2.38 -0.01 2.53 16 6 C 0.49 18.67 6.86 87.66 0.60 19.27 16 7 O -0.58 -27.80 16.04 15.31 0.25 -27.55 16 8 N -0.60 -22.42 2.97 -818.89 -2.43 -24.86 16 9 C 0.10 2.79 5.96 86.36 0.51 3.30 16 10 C -0.12 -4.03 6.08 30.67 0.19 -3.84 16 11 C -0.10 -4.62 4.96 30.62 0.15 -4.47 16 12 C 0.04 2.31 2.25 -11.46 -0.03 2.28 16 13 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 14 C -0.54 -30.40 8.57 25.60 0.22 -30.18 16 15 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 16 C 0.02 1.12 5.30 84.65 0.45 1.57 16 17 N -0.91 -52.07 11.31 21.44 0.24 -51.83 16 18 Si 0.95 43.86 29.54 68.60 2.03 45.88 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 C 0.13 5.92 5.64 86.36 0.49 6.40 16 23 C -0.10 -2.94 4.84 -19.87 -0.10 -3.04 16 24 C -0.11 -3.43 9.33 22.27 0.21 -3.22 16 25 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 26 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 27 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 28 C -0.11 -2.35 8.74 22.27 0.19 -2.16 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.11 2.16 2.94 -2.39 -0.01 2.15 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.65 8.09 -2.39 -0.02 1.63 16 37 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.06 3.28 6.03 -2.39 -0.01 3.27 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.05 2.37 7.04 -2.39 -0.02 2.36 16 43 H 0.10 3.61 7.86 -2.91 -0.02 3.58 16 44 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 45 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 46 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 47 H 0.15 2.43 6.27 -2.91 -0.02 2.41 16 Total: -1.00 -74.01 373.57 4.68 -69.33 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.95 Total: 20.07 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.82 Total: -18.63 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -2.19 Total: -76.69 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.93 Total: -39.97 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -74.01 4.68 -69.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.751 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds