Wall clock time and date at job start Tue Mar 31 2020 12:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35659 * 117.00209 * 2 1 4 4 C 1.39072 * 119.89000 * 179.97438 * 3 2 1 5 5 C 1.37124 * 120.12038 * 180.02562 * 4 3 2 6 6 C 1.40041 * 119.87913 * 359.97192 * 5 4 3 7 7 C 1.46856 * 120.11077 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00481 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99560 * 180.02562 * 7 6 5 10 10 C 1.53125 * 109.52288 * 155.00102 * 9 7 6 11 11 C 1.53033 * 109.28287 * 177.55486 * 10 9 7 12 12 N 1.46851 * 109.52231 * 300.82460 * 11 10 9 13 13 C 1.46898 * 110.99682 * 185.83477 * 12 11 10 14 14 C 1.53006 * 109.47006 * 170.00115 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47510 * 119.99847 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99882 * 19 17 15 23 23 C 1.46846 * 111.19864 * 61.73920 * 12 11 10 24 24 C 1.53033 * 109.52460 * 298.25500 * 23 12 11 25 25 C 1.40045 * 119.77167 * 0.28200 * 6 5 4 26 26 C 1.37113 * 119.88323 * 359.46333 * 25 6 5 27 27 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47535 * 300.00374 * 1 2 3 29 29 H 1.09004 * 109.46999 * 60.00730 * 1 2 3 30 30 H 1.08002 * 119.94442 * 0.02562 * 4 3 2 31 31 H 1.07991 * 120.06130 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.52745 * 34.87519 * 9 7 6 33 33 H 1.09005 * 109.50073 * 57.61461 * 10 9 7 34 34 H 1.08991 * 109.50379 * 297.49976 * 10 9 7 35 35 H 1.08989 * 109.46624 * 180.80484 * 11 10 9 36 36 H 1.09002 * 109.45127 * 60.82884 * 11 10 9 37 37 H 1.09001 * 109.47392 * 50.00413 * 13 12 11 38 38 H 1.09001 * 109.47520 * 290.00136 * 13 12 11 39 39 H 1.09001 * 109.47002 * 299.99782 * 14 13 12 40 40 H 1.08993 * 109.46955 * 60.00219 * 14 13 12 41 41 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46555 * 58.27646 * 23 12 11 43 43 H 1.09001 * 109.46296 * 178.24247 * 23 12 11 44 44 H 1.08997 * 109.50475 * 299.23909 * 24 23 12 45 45 H 1.09002 * 109.50799 * 179.12007 * 24 23 12 46 46 H 1.07995 * 120.05325 * 179.70226 * 25 6 5 47 47 H 1.07997 * 119.94167 * 180.25891 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4339 1.2788 0.0005 5 6 4.0613 2.4980 0.0011 6 6 3.3009 3.6740 0.0005 7 6 3.9676 4.9825 0.0005 8 8 5.1789 5.0460 0.0005 9 6 3.1468 6.2463 0.0004 10 6 3.9650 7.3879 0.6103 11 6 3.1494 8.6815 0.5519 12 7 2.8140 8.9875 -0.8447 13 6 2.1505 10.2937 -0.9526 14 6 2.0416 10.6901 -2.4264 15 6 1.3615 12.0304 -2.5371 16 1 1.0389 12.5475 -1.6455 17 6 1.1503 12.5959 -3.7767 18 7 1.5428 11.9660 -4.8624 19 14 0.3067 14.2569 -3.9140 20 1 -0.0348 14.7524 -2.5563 21 1 1.2188 15.2220 -4.5787 22 1 -0.9352 14.1166 -4.7161 23 6 1.9884 7.9273 -1.4370 24 6 2.7693 6.6113 -1.4380 25 6 1.9025 3.5979 0.0053 26 6 1.2850 2.3737 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0194 0.3713 0.0005 31 1 5.1399 2.5513 0.0019 32 1 2.2415 6.0928 0.5878 33 1 4.8893 7.5147 0.0466 34 1 4.2004 7.1528 1.6482 35 1 3.7346 9.4992 0.9724 36 1 2.2318 8.5584 1.1272 37 1 2.7337 11.0428 -0.4170 38 1 1.1526 10.2314 -0.5184 39 1 3.0395 10.7525 -2.8606 40 1 1.4584 9.9411 -2.9619 41 1 1.3939 12.3637 -5.7345 42 1 1.0762 7.8079 -0.8524 43 1 1.7305 8.1973 -2.4611 44 1 3.6748 6.7259 -2.0339 45 1 2.1506 5.8212 -1.8634 46 1 1.3117 4.5018 0.0097 47 1 0.2067 2.3139 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054886727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:09 Heat of formation + Delta-G solvation = -57.676007 kcal Electronic energy + Delta-G solvation = -25867.705343 eV Core-core repulsion = 22208.284604 eV Total energy + Delta-G solvation = -3659.420739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83678 -39.87576 -38.16709 -37.29033 -34.24155 -32.67923 -31.66409 -30.94647 -30.51477 -29.26357 -27.95172 -25.77373 -24.03513 -23.29815 -22.91769 -22.44814 -20.53395 -19.86829 -19.26497 -18.67628 -16.82684 -16.77189 -16.41816 -16.23779 -15.44163 -15.24871 -14.84184 -14.66705 -14.53241 -14.35130 -13.97470 -13.91584 -13.80564 -13.22919 -13.11444 -12.92106 -12.85111 -12.57948 -12.35105 -12.23185 -11.77555 -11.49671 -11.34026 -11.22007 -11.12793 -10.97282 -10.86567 -10.60169 -10.51757 -10.35399 -9.79560 -9.58195 -9.49743 -9.26866 -9.09162 -8.63265 -8.32481 -7.69360 -5.98998 -4.01248 0.44147 0.98611 2.24839 2.76131 3.31290 3.38830 3.42610 3.47087 3.87026 4.28827 4.37482 4.43582 4.54327 4.61620 4.68194 4.73782 4.87270 4.91307 4.98927 5.01449 5.06514 5.22241 5.36872 5.38821 5.42639 5.58708 5.60028 5.70546 5.76455 5.80182 5.84406 5.89066 5.91972 6.06343 6.15182 6.25916 6.26665 6.31761 6.37204 6.50833 6.55845 6.87468 6.98316 7.47067 7.53882 7.60439 7.81831 7.91359 8.09875 8.44544 9.06332 9.62375 11.12381 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002306 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.175785 B =12141.753423 C =12959.854925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.157 3.843 4 C -0.167 4.167 5 C -0.022 4.022 6 C -0.206 4.206 7 C 0.406 3.594 8 O -0.453 6.453 9 C -0.131 4.131 10 C -0.102 4.102 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.064 3.936 14 C 0.027 3.973 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.058 3.942 24 C -0.102 4.102 25 C -0.028 4.028 26 C -0.222 4.222 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.025 0.975 40 H 0.017 0.983 41 H 0.260 0.740 42 H 0.027 0.973 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.138 0.862 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -24.165 12.167 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.110 3.890 4 C -0.185 4.185 5 C -0.040 4.040 6 C -0.207 4.207 7 C 0.284 3.716 8 O -0.328 6.328 9 C -0.150 4.150 10 C -0.140 4.140 11 C -0.072 4.072 12 N -0.264 5.264 13 C -0.063 4.063 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.070 4.070 24 C -0.140 4.140 25 C -0.046 4.046 26 C -0.241 4.241 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.155 0.845 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.262 -24.281 11.721 26.963 hybrid contribution -1.702 0.945 0.288 1.967 sum -1.963 -23.336 12.009 26.318 Atomic orbital electron populations 1.23151 0.77804 1.04321 1.01812 1.86034 1.21923 1.26985 1.87724 1.19411 0.92459 0.84256 0.92830 1.20293 0.91257 0.98900 1.08055 1.21132 1.00678 0.90410 0.91787 1.20506 0.94281 0.95176 1.10734 1.22373 0.89037 0.89498 0.70711 1.90510 1.16374 1.89605 1.36308 1.21725 0.99640 0.93849 0.99773 1.21492 0.99412 0.92840 1.00231 1.22044 0.97987 0.97044 0.90141 1.62004 1.45540 1.03169 1.15659 1.22321 0.94772 0.87453 1.01743 1.19112 0.97618 0.95636 0.88665 1.21233 1.38260 1.04156 0.92333 0.92771 1.24994 0.95854 0.97588 0.95924 1.69977 1.47137 1.38382 0.97709 0.86552 0.79244 0.84231 0.78045 1.19798 1.20987 1.21072 1.22074 0.93206 0.90252 1.01516 1.21549 1.01651 0.97362 0.93430 1.21220 0.93476 0.97756 0.92187 1.21130 1.00497 0.92141 1.10329 0.87958 0.92276 0.92177 0.84593 0.84162 0.89209 0.89951 0.91904 0.90757 0.95649 0.92053 0.96291 0.95668 0.96491 0.93061 0.95517 0.89041 0.90383 0.91402 0.84473 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.80 101.05 0.99 1.10 16 2 O -0.31 -2.58 10.48 -18.68 -0.20 -2.77 16 3 C 0.16 1.40 6.70 -38.96 -0.26 1.14 16 4 C -0.17 -1.51 9.95 -39.68 -0.39 -1.90 16 5 C -0.02 -0.22 9.57 -39.31 -0.38 -0.60 16 6 C -0.21 -2.21 5.87 -105.06 -0.62 -2.83 16 7 C 0.41 5.09 6.22 -30.82 -0.19 4.89 16 8 O -0.45 -6.92 16.03 5.55 0.09 -6.83 16 9 C -0.13 -1.58 1.89 -91.64 -0.17 -1.75 16 10 C -0.10 -1.36 4.96 -26.65 -0.13 -1.49 16 11 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 12 N -0.54 -9.74 4.66 -234.67 -1.09 -10.83 16 13 C 0.06 1.34 4.90 -3.82 -0.02 1.32 16 14 C 0.03 0.70 4.90 -27.88 -0.14 0.56 16 15 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.06 0.93 5.29 -3.84 -0.02 0.91 16 24 C -0.10 -1.36 5.36 -26.65 -0.14 -1.51 16 25 C -0.03 -0.25 9.34 -39.31 -0.37 -0.62 16 26 C -0.22 -1.80 8.99 -39.67 -0.36 -2.16 16 27 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 29 H 0.06 0.23 7.65 -51.93 -0.40 -0.16 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.14 1.35 7.64 -52.49 -0.40 0.95 16 32 H 0.09 0.91 6.72 -51.93 -0.35 0.56 16 33 H 0.08 1.26 7.79 -51.93 -0.40 0.85 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.08 8.01 -51.94 -0.42 0.67 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 1.28 7.99 -51.93 -0.41 0.87 16 38 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 39 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.46 6.43 -51.93 -0.33 0.12 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 1.68 6.21 -51.93 -0.32 1.36 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.14 1.03 6.45 -52.49 -0.34 0.69 16 47 H 0.13 0.78 6.27 -52.49 -0.33 0.45 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -32.62 377.12 -9.88 -42.50 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.45 Total: -2.64 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.63 Total: -15.60 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.36 Total: -36.95 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.11 Total: -9.60 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.62 -9.88 -42.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054886727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.177 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds