Wall clock time and date at job start Tue Mar 31 2020 12:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35659 * 117.00209 * 2 1 4 4 C 1.39072 * 119.89000 * 179.97438 * 3 2 1 5 5 C 1.37124 * 120.12038 * 180.02562 * 4 3 2 6 6 C 1.40041 * 119.87913 * 359.97192 * 5 4 3 7 7 C 1.46856 * 120.11077 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00481 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99560 * 180.02562 * 7 6 5 10 10 C 1.53125 * 109.52288 * 155.00102 * 9 7 6 11 11 C 1.53033 * 109.28287 * 177.55486 * 10 9 7 12 12 N 1.46851 * 109.52231 * 300.82460 * 11 10 9 13 13 C 1.46898 * 110.99682 * 185.83477 * 12 11 10 14 14 C 1.53006 * 109.47006 * 170.00115 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47510 * 119.99847 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99882 * 19 17 15 23 23 C 1.46846 * 111.19864 * 61.73920 * 12 11 10 24 24 C 1.53033 * 109.52460 * 298.25500 * 23 12 11 25 25 C 1.40045 * 119.77167 * 0.28200 * 6 5 4 26 26 C 1.37113 * 119.88323 * 359.46333 * 25 6 5 27 27 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47535 * 300.00374 * 1 2 3 29 29 H 1.09004 * 109.46999 * 60.00730 * 1 2 3 30 30 H 1.08002 * 119.94442 * 0.02562 * 4 3 2 31 31 H 1.07991 * 120.06130 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.52745 * 34.87519 * 9 7 6 33 33 H 1.09005 * 109.50073 * 57.61461 * 10 9 7 34 34 H 1.08991 * 109.50379 * 297.49976 * 10 9 7 35 35 H 1.08989 * 109.46624 * 180.80484 * 11 10 9 36 36 H 1.09002 * 109.45127 * 60.82884 * 11 10 9 37 37 H 1.09001 * 109.47392 * 50.00413 * 13 12 11 38 38 H 1.09001 * 109.47520 * 290.00136 * 13 12 11 39 39 H 1.09001 * 109.47002 * 299.99782 * 14 13 12 40 40 H 1.08993 * 109.46955 * 60.00219 * 14 13 12 41 41 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46555 * 58.27646 * 23 12 11 43 43 H 1.09001 * 109.46296 * 178.24247 * 23 12 11 44 44 H 1.08997 * 109.50475 * 299.23909 * 24 23 12 45 45 H 1.09002 * 109.50799 * 179.12007 * 24 23 12 46 46 H 1.07995 * 120.05325 * 179.70226 * 25 6 5 47 47 H 1.07997 * 119.94167 * 180.25891 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4339 1.2788 0.0005 5 6 4.0613 2.4980 0.0011 6 6 3.3009 3.6740 0.0005 7 6 3.9676 4.9825 0.0005 8 8 5.1789 5.0460 0.0005 9 6 3.1468 6.2463 0.0004 10 6 3.9650 7.3879 0.6103 11 6 3.1494 8.6815 0.5519 12 7 2.8140 8.9875 -0.8447 13 6 2.1505 10.2937 -0.9526 14 6 2.0416 10.6901 -2.4264 15 6 1.3615 12.0304 -2.5371 16 1 1.0389 12.5475 -1.6455 17 6 1.1503 12.5959 -3.7767 18 7 1.5428 11.9660 -4.8624 19 14 0.3067 14.2569 -3.9140 20 1 -0.0348 14.7524 -2.5563 21 1 1.2188 15.2220 -4.5787 22 1 -0.9352 14.1166 -4.7161 23 6 1.9884 7.9273 -1.4370 24 6 2.7693 6.6113 -1.4380 25 6 1.9025 3.5979 0.0053 26 6 1.2850 2.3737 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0194 0.3713 0.0005 31 1 5.1399 2.5513 0.0019 32 1 2.2415 6.0928 0.5878 33 1 4.8893 7.5147 0.0466 34 1 4.2004 7.1528 1.6482 35 1 3.7346 9.4992 0.9724 36 1 2.2318 8.5584 1.1272 37 1 2.7337 11.0428 -0.4170 38 1 1.1526 10.2314 -0.5184 39 1 3.0395 10.7525 -2.8606 40 1 1.4584 9.9411 -2.9619 41 1 1.3939 12.3637 -5.7345 42 1 1.0762 7.8079 -0.8524 43 1 1.7305 8.1973 -2.4611 44 1 3.6748 6.7259 -2.0339 45 1 2.1506 5.8212 -1.8634 46 1 1.3117 4.5018 0.0097 47 1 0.2067 2.3139 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054886727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:08 Heat of formation + Delta-G solvation = -77.083928 kcal Electronic energy + Delta-G solvation = -25868.546934 eV Core-core repulsion = 22208.284604 eV Total energy + Delta-G solvation = -3660.262330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62666 -40.72309 -39.35646 -38.04328 -35.87976 -34.45355 -32.50900 -31.94405 -31.46958 -30.91737 -28.49494 -27.20006 -25.49474 -24.29873 -24.05438 -23.33525 -21.99566 -21.15330 -20.28936 -19.28028 -18.58261 -17.70170 -17.43543 -16.73564 -16.61812 -16.54335 -16.17537 -16.01959 -15.64677 -15.40829 -15.22610 -14.72493 -14.68413 -14.47957 -14.21376 -14.13268 -13.94727 -13.72697 -13.48334 -13.16380 -13.03962 -12.89286 -12.81666 -12.53967 -12.31291 -12.15064 -12.03936 -11.93604 -11.83066 -11.58489 -11.57435 -11.19900 -11.15049 -10.55274 -10.46827 -10.16394 -9.31304 -9.10604 -8.18626 -6.29688 -0.33468 0.32710 1.38781 1.40846 1.41647 1.54675 2.25733 2.41264 2.74621 2.94954 3.10784 3.14830 3.67010 3.71210 3.82443 3.84676 4.04010 4.19055 4.21937 4.27603 4.35678 4.39128 4.40897 4.47299 4.50746 4.54552 4.57778 4.62434 4.74870 4.77126 4.77299 4.89348 4.96668 5.01394 5.05881 5.10587 5.14915 5.16526 5.23122 5.36433 5.40498 5.48980 5.60659 5.69989 5.81411 6.14363 6.31041 6.36232 6.39768 6.55402 6.88180 7.39366 8.93680 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002306 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.175785 B =12141.753423 C =12959.854925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.156 3.844 4 C -0.175 4.175 5 C -0.030 4.030 6 C -0.226 4.226 7 C 0.412 3.588 8 O -0.491 6.491 9 C -0.125 4.125 10 C -0.098 4.098 11 C 0.058 3.942 12 N -0.559 5.559 13 C 0.081 3.919 14 C 0.035 3.965 15 C -0.542 4.542 16 H 0.061 0.939 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.277 1.277 23 C 0.059 3.941 24 C -0.093 4.093 25 C -0.024 4.024 26 C -0.221 4.221 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.025 0.975 39 H -0.013 1.013 40 H -0.002 1.002 41 H 0.263 0.737 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.094 0.906 46 H 0.156 0.844 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -24.906 13.741 28.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.109 3.891 4 C -0.194 4.194 5 C -0.049 4.049 6 C -0.227 4.227 7 C 0.292 3.708 8 O -0.369 6.369 9 C -0.144 4.144 10 C -0.135 4.135 11 C -0.069 4.069 12 N -0.284 5.284 13 C -0.046 4.046 14 C -0.002 4.002 15 C -0.580 4.580 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.203 1.203 23 C -0.069 4.069 24 C -0.131 4.131 25 C -0.042 4.042 26 C -0.239 4.239 27 H 0.138 0.862 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.006 0.994 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.174 0.826 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.597 -25.041 13.314 28.479 hybrid contribution -1.007 1.040 -0.217 1.464 sum -3.604 -24.001 13.097 27.578 Atomic orbital electron populations 1.23460 0.75845 1.05967 1.02787 1.86028 1.23986 1.26689 1.87354 1.19584 0.92543 0.84999 0.91979 1.20436 0.91923 0.98904 1.08095 1.21169 1.00638 0.90873 0.92172 1.20424 0.95237 0.94175 1.12872 1.22558 0.88488 0.90360 0.69378 1.90503 1.17892 1.90059 1.38444 1.21714 1.00560 0.93181 0.98958 1.21430 0.98260 0.92719 1.01137 1.22090 0.98957 0.97754 0.88109 1.61893 1.45784 1.02457 1.18292 1.21937 0.95432 0.89284 0.97983 1.18942 0.94776 0.94763 0.91759 1.21663 1.38408 1.05151 0.92802 0.92115 1.25969 0.96491 1.01834 0.95506 1.70117 1.48334 1.40406 0.98369 0.85385 0.78067 0.78921 0.78559 1.18487 1.20585 1.20279 1.22040 0.94237 0.90774 0.99831 1.21440 1.00592 0.96647 0.94389 1.21418 0.92629 0.98913 0.91244 1.21413 1.01831 0.91386 1.09288 0.86193 0.91073 0.91318 0.83566 0.84705 0.86087 0.92551 0.89926 0.90771 0.93664 0.92097 0.95644 0.99442 0.98380 0.92818 0.93541 0.92250 0.92937 0.88788 0.82614 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.80 113.37 1.11 1.19 16 2 O -0.33 -4.65 10.48 -89.75 -0.94 -5.59 16 3 C 0.16 2.46 6.70 22.67 0.15 2.61 16 4 C -0.18 -3.00 9.95 22.21 0.22 -2.78 16 5 C -0.03 -0.60 9.57 22.45 0.21 -0.38 16 6 C -0.23 -4.56 5.87 -20.15 -0.12 -4.68 16 7 C 0.41 10.02 6.22 27.94 0.17 10.20 16 8 O -0.49 -15.32 16.03 -3.07 -0.05 -15.36 16 9 C -0.13 -2.81 1.89 -11.46 -0.02 -2.83 16 10 C -0.10 -2.51 4.96 30.65 0.15 -2.36 16 11 C 0.06 1.65 5.46 86.32 0.47 2.12 16 12 N -0.56 -20.24 4.66 -896.37 -4.17 -24.41 16 13 C 0.08 3.43 4.90 86.31 0.42 3.85 16 14 C 0.04 1.88 4.90 29.85 0.15 2.03 16 15 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 18 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 19 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C 0.06 1.89 5.29 86.32 0.46 2.34 16 24 C -0.09 -2.41 5.36 30.65 0.16 -2.25 16 25 C -0.02 -0.36 9.34 22.44 0.21 -0.15 16 26 C -0.22 -2.91 8.99 22.21 0.20 -2.71 16 27 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.07 0.28 7.65 -2.39 -0.02 0.26 16 29 H 0.07 0.32 7.65 -2.38 -0.02 0.30 16 30 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.14 2.70 7.64 -2.91 -0.02 2.67 16 32 H 0.12 2.00 6.72 -2.39 -0.02 1.98 16 33 H 0.06 1.75 7.79 -2.38 -0.02 1.73 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.08 8.01 -2.39 -0.02 2.06 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 2.55 7.99 -2.39 -0.02 2.53 16 38 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H 0.00 -0.12 6.43 -2.39 -0.02 -0.13 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 2.27 6.21 -2.39 -0.01 2.26 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.16 1.70 6.45 -2.91 -0.02 1.68 16 47 H 0.16 1.21 6.27 -2.91 -0.02 1.19 16 Total: -1.00 -72.65 377.12 2.75 -69.90 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.95 Total: 10.24 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.65 Total: -24.14 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -3.89 Total: -81.46 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.99 Total: -20.95 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.65 2.75 -69.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054886727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.183 kcal (2) G-P(sol) polarization free energy of solvation -72.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds