Wall clock time and date at job start Tue Mar 31 2020 11:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35994 * 117.00400 * 2 1 4 4 C 1.38375 * 120.16395 * 0.02562 * 3 2 1 5 5 C 1.38683 * 120.38631 * 179.97438 * 4 3 2 6 6 C 1.37900 * 119.96849 * 359.89524 * 5 4 3 7 7 C 1.38743 * 119.85136 * 0.17948 * 6 5 4 8 8 C 1.38355 * 120.41125 * 359.87499 * 7 6 5 9 9 O 1.35991 * 120.14739 * 179.97438 * 8 7 6 10 10 C 1.42904 * 116.99709 * 0.02562 * 9 8 7 11 11 C 1.50652 * 121.82477 * 180.48567 * 6 5 4 12 12 N 1.46627 * 110.49572 * 342.36265 * 11 6 5 13 13 C 1.46898 * 110.99778 * 289.18517 * 12 11 6 14 14 C 1.53002 * 109.47358 * 286.52861 * 13 12 11 15 15 C 1.50702 * 115.54550 * 305.54793 * 14 13 12 16 16 H 1.08004 * 119.99719 * 93.00217 * 15 14 13 17 17 C 1.37876 * 120.00321 * 272.72510 * 15 14 13 18 18 N 1.31516 * 119.99957 * 355.54750 * 17 15 14 19 19 Si 1.86797 * 120.00188 * 175.54564 * 17 15 14 20 20 H 1.48498 * 109.47379 * 90.00360 * 19 17 15 21 21 H 1.48507 * 109.46982 * 210.00230 * 19 17 15 22 22 H 1.48498 * 109.47240 * 329.99890 * 19 17 15 23 23 C 1.52995 * 117.49910 * 91.21713 * 14 13 12 24 24 C 1.52990 * 117.49983 * 159.88062 * 14 13 12 25 25 C 1.47161 * 110.23472 * 52.59732 * 12 11 6 26 26 C 1.50736 * 118.39142 * 179.83901 * 5 4 3 27 27 H 1.08997 * 109.47278 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46848 * 299.99712 * 1 2 3 29 29 H 1.08999 * 109.47363 * 59.99381 * 1 2 3 30 30 H 1.08004 * 119.80378 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.79648 * 179.85302 * 7 6 5 32 32 H 1.09007 * 109.47249 * 300.00155 * 10 9 8 33 33 H 1.09000 * 109.47192 * 59.99882 * 10 9 8 34 34 H 1.08994 * 109.47097 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.26411 * 222.10376 * 11 6 5 36 36 H 1.08997 * 109.28082 * 102.62938 * 11 6 5 37 37 H 1.09000 * 109.47038 * 166.52768 * 13 12 11 38 38 H 1.09006 * 109.46895 * 46.52675 * 13 12 11 39 39 H 0.96994 * 120.00029 * 185.00609 * 18 17 15 40 40 H 1.09006 * 117.49514 * 215.00290 * 23 14 13 41 41 H 1.08997 * 117.50399 * 0.02632 * 23 14 13 42 42 H 1.08997 * 117.50353 * 359.97438 * 24 14 13 43 43 H 1.09002 * 117.49830 * 144.97492 * 24 14 13 44 44 H 1.08995 * 109.63366 * 48.40845 * 25 12 11 45 45 H 1.09001 * 109.62674 * 168.80193 * 25 12 11 46 46 H 1.08993 * 109.39285 * 42.95091 * 26 5 4 47 47 H 1.09007 * 109.30203 * 283.20367 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2962 2.3744 0.0005 5 6 1.9211 3.6125 0.0011 6 6 3.2980 3.6891 0.0033 7 6 4.0544 2.5260 0.0011 8 6 3.4360 1.2884 -0.0005 9 8 4.1826 0.1518 -0.0031 10 6 5.6030 0.3087 -0.0034 11 6 4.0200 5.0113 0.0148 12 7 3.1177 6.0925 -0.3937 13 6 2.8054 6.0045 -1.8264 14 6 4.0240 6.4416 -2.6418 15 6 4.5781 7.8018 -2.3041 16 1 5.3755 7.8959 -1.5818 17 6 4.0709 8.9255 -2.9214 18 7 3.1656 8.8040 -3.8676 19 14 4.6695 10.6206 -2.4136 20 1 5.8429 10.9996 -3.2410 21 1 3.5812 11.6108 -2.6152 22 1 5.0599 10.5991 -0.9811 23 6 5.0189 5.3578 -3.0615 24 6 4.0942 5.9931 -4.1028 25 6 1.8896 6.0640 0.4166 26 6 1.0602 4.8498 -0.0021 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 0.2177 2.3173 0.0014 31 1 5.1326 2.5871 0.0005 32 1 5.9074 0.8612 -0.8925 33 1 5.9081 0.8576 0.8875 34 1 6.0770 -0.6727 -0.0060 35 1 4.8631 4.9666 -0.6745 36 1 4.3887 5.2112 1.0208 37 1 1.9623 6.6564 -2.0551 38 1 2.5487 4.9759 -2.0797 39 1 2.8621 9.5877 -4.3519 40 1 6.0743 5.6286 -3.0934 41 1 4.8052 4.3332 -2.7571 42 1 3.2725 5.3862 -4.4831 43 1 4.5409 6.6819 -4.8199 44 1 2.1491 5.9840 1.4722 45 1 1.3185 6.9770 0.2481 46 1 0.2341 4.7177 0.6965 47 1 0.6641 5.0106 -1.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:34 Heat of formation + Delta-G solvation = -28.746820 kcal Electronic energy + Delta-G solvation = -27740.699659 eV Core-core repulsion = 24082.533383 eV Total energy + Delta-G solvation = -3658.166276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.91074 -40.25989 -39.40560 -38.12960 -36.34454 -33.84758 -33.33871 -31.53692 -29.85775 -28.71396 -28.06992 -27.85370 -27.06969 -24.54703 -23.60943 -23.02421 -22.73368 -21.31811 -20.22124 -19.21346 -18.13365 -17.85849 -17.41427 -17.04210 -16.59827 -16.26228 -16.13589 -15.95759 -15.69475 -15.44628 -15.33894 -15.13291 -14.85626 -14.47627 -14.14832 -13.62383 -13.34568 -13.28593 -13.12348 -12.98451 -12.94170 -12.78774 -12.59415 -12.40554 -12.32750 -12.24054 -12.15227 -12.04630 -11.94964 -11.65690 -11.34445 -11.14772 -10.78008 -10.26086 -9.85049 -9.59022 -8.93010 -8.67768 -7.94864 -6.02407 0.26358 0.38984 1.45692 1.48671 1.58154 2.34350 2.36277 2.52814 2.63566 3.19092 3.33010 3.63707 3.69595 3.77969 3.94840 4.10837 4.22191 4.28150 4.33210 4.37397 4.38562 4.40558 4.43692 4.50585 4.56237 4.61254 4.70573 4.71602 4.73325 4.74115 4.78339 4.80614 4.96785 5.00087 5.02116 5.06753 5.15376 5.20601 5.25227 5.32326 5.60564 5.70114 5.73786 5.77257 5.93627 6.09645 6.37884 6.45818 6.60347 6.64201 7.00362 7.62223 9.12387 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018745 B = 0.003828 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.356396 B = 7312.899017 C = 7857.144943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.081 3.919 4 C -0.169 4.169 5 C -0.082 4.082 6 C -0.107 4.107 7 C -0.168 4.168 8 C 0.082 3.918 9 O -0.328 6.328 10 C 0.018 3.982 11 C 0.096 3.904 12 N -0.519 5.519 13 C 0.125 3.875 14 C 0.032 3.968 15 C -0.467 4.467 16 H 0.048 0.952 17 C 0.022 3.978 18 N -0.916 5.916 19 Si 0.943 3.057 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.270 1.270 23 C -0.190 4.190 24 C -0.161 4.161 25 C 0.052 3.948 26 C -0.107 4.107 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.013 0.987 39 H 0.254 0.746 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -16.070 10.314 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.036 3.964 4 C -0.188 4.188 5 C -0.082 4.082 6 C -0.109 4.109 7 C -0.187 4.187 8 C 0.036 3.964 9 O -0.243 6.243 10 C -0.076 4.076 11 C -0.032 4.032 12 N -0.239 5.239 13 C -0.003 4.003 14 C 0.032 3.968 15 C -0.506 4.506 16 H 0.067 0.933 17 C -0.176 4.176 18 N -0.556 5.556 19 Si 0.770 3.230 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.194 1.194 23 C -0.227 4.227 24 C -0.199 4.199 25 C -0.077 4.077 26 C -0.146 4.146 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.059 0.941 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.118 0.882 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.371 -15.855 10.329 19.221 hybrid contribution -0.181 0.598 -0.493 0.795 sum -3.552 -15.257 9.836 18.497 Atomic orbital electron populations 1.23324 0.76736 1.05484 1.02041 1.86115 1.23087 1.25830 1.89301 1.18345 0.89436 0.85617 1.03051 1.21133 1.00715 0.90229 1.06729 1.19448 0.93132 0.94811 1.00825 1.20327 0.93719 0.96417 1.00484 1.21116 1.01075 0.90036 1.06465 1.18368 0.88681 0.86403 1.02913 1.86106 1.20408 1.28462 1.89276 1.23322 0.76931 1.05307 1.02045 1.21123 0.95682 0.84504 1.01880 1.62356 1.14449 1.43358 1.03743 1.21288 0.96776 0.95274 0.86985 1.18951 0.93512 0.92427 0.91954 1.20475 1.17657 0.90106 1.22313 0.93349 1.25528 0.95175 1.01553 0.95358 1.70112 1.31762 1.29823 1.23879 0.85792 0.77440 0.80967 0.78799 1.20864 1.21578 1.19433 1.22978 0.96339 0.96968 1.06385 1.22334 1.00886 1.02197 0.94465 1.22287 0.90384 0.96812 0.98171 1.21050 0.98346 0.92601 1.02576 0.86228 0.91629 0.92257 0.82903 0.83376 0.92384 0.91691 0.86133 0.89955 0.89126 0.94110 0.96930 0.93688 0.90651 0.90318 0.91982 0.92224 0.89549 0.90855 0.88165 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -8.72 10.29 -79.80 -0.82 -9.54 16 3 C 0.08 2.31 6.70 22.53 0.15 2.46 16 4 C -0.17 -4.44 8.66 22.41 0.19 -4.25 16 5 C -0.08 -2.36 5.09 -19.83 -0.10 -2.46 16 6 C -0.11 -3.27 5.11 -19.84 -0.10 -3.37 16 7 C -0.17 -4.72 8.65 22.42 0.19 -4.53 16 8 C 0.08 2.39 6.69 22.52 0.15 2.54 16 9 O -0.33 -9.01 10.29 -79.76 -0.82 -9.83 16 10 C 0.02 0.33 9.81 113.37 1.11 1.45 16 11 C 0.10 3.19 5.44 85.59 0.47 3.65 16 12 N -0.52 -19.66 4.65 -901.15 -4.19 -23.86 16 13 C 0.12 5.42 3.63 86.30 0.31 5.74 16 14 C 0.03 1.56 1.32 -52.93 -0.07 1.49 16 15 C -0.47 -25.15 8.53 25.60 0.22 -24.93 16 16 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 17 C 0.02 1.21 5.42 84.65 0.46 1.67 16 18 N -0.92 -52.52 12.49 21.45 0.27 -52.25 16 19 Si 0.94 43.99 29.54 68.60 2.03 46.02 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 C -0.19 -8.13 8.37 30.62 0.26 -7.88 16 24 C -0.16 -7.75 9.06 30.62 0.28 -7.47 16 25 C 0.05 1.59 5.97 86.22 0.51 2.10 16 26 C -0.11 -2.92 5.18 29.82 0.15 -2.77 16 27 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 0.90 7.66 -2.38 -0.02 0.88 16 29 H 0.06 0.90 7.67 -2.39 -0.02 0.88 16 30 H 0.15 3.14 6.29 -2.91 -0.02 3.12 16 31 H 0.15 3.56 6.28 -2.91 -0.02 3.54 16 32 H 0.06 1.03 7.66 -2.38 -0.02 1.01 16 33 H 0.06 1.03 7.66 -2.39 -0.02 1.02 16 34 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 2.93 5.68 -2.39 -0.01 2.92 16 36 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.04 1.98 7.98 -2.39 -0.02 1.96 16 38 H 0.01 0.54 6.12 -2.38 -0.01 0.52 16 39 H 0.25 14.08 8.32 -92.71 -0.77 13.31 16 40 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 41 H 0.08 3.07 7.86 -2.39 -0.02 3.05 16 42 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 43 H 0.06 3.15 8.07 -2.39 -0.02 3.13 16 44 H 0.09 2.34 8.05 -2.39 -0.02 2.32 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.07 1.98 7.18 -2.38 -0.02 1.96 16 Total: -1.00 -65.65 369.31 2.72 -62.93 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.96 Total: 21.67 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 5.30 Total: -35.14 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -3.92 Total: -76.10 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -1.64 Total: -19.38 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -65.65 2.72 -62.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.185 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds