Wall clock time and date at job start Tue Mar 31 2020 12:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00059 * 2 1 4 4 H 1.09009 * 109.46724 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47406 * 240.00179 * 3 2 1 6 6 C 1.50702 * 109.47159 * 64.99564 * 5 3 2 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 3 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 3 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 C 1.50697 * 109.46949 * 90.00203 * 9 8 6 11 11 H 1.08004 * 120.00186 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00081 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00096 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00103 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46927 * 59.99717 * 14 12 10 16 16 H 1.48496 * 109.47287 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47040 * 299.99940 * 14 12 10 18 18 C 1.46506 * 120.00264 * 0.28128 * 8 6 5 19 19 C 1.52998 * 109.47320 * 89.99349 * 18 8 6 20 20 O 1.42902 * 109.46765 * 65.00041 * 19 18 8 21 21 C 1.42904 * 113.99770 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.46952 * 119.99665 * 3 2 1 23 23 C 1.38232 * 120.00016 * 59.73357 * 22 3 2 24 24 C 1.38241 * 120.00239 * 179.78371 * 23 22 3 25 25 C 1.38235 * 119.99546 * 0.44154 * 24 23 22 26 26 C 1.38232 * 120.00296 * 359.80940 * 25 24 23 27 27 C 1.38239 * 119.99908 * 239.99826 * 22 3 2 28 28 H 1.08001 * 119.99830 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00292 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00001 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47066 * 304.99767 * 5 3 2 32 32 H 1.08994 * 109.47405 * 184.99597 * 5 3 2 33 33 H 1.09001 * 109.47567 * 210.00057 * 9 8 6 34 34 H 1.09005 * 109.47076 * 330.00563 * 9 8 6 35 35 H 0.96991 * 119.99957 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.46996 * 209.99677 * 18 8 6 37 37 H 1.09001 * 109.46578 * 329.99540 * 18 8 6 38 38 H 1.08993 * 109.47026 * 185.00460 * 19 18 8 39 39 H 1.08999 * 109.47226 * 305.00909 * 19 18 8 40 40 H 1.09002 * 109.46990 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47260 * 300.00210 * 21 20 19 42 42 H 1.08999 * 109.47112 * 60.00586 * 21 20 19 43 43 H 1.08004 * 119.99911 * 359.97438 * 23 22 3 44 44 H 1.07996 * 120.00166 * 180.27338 * 24 23 22 45 45 H 1.07997 * 119.99493 * 179.83656 * 25 24 23 46 46 H 1.08002 * 120.00413 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.00135 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0698 1.4301 -2.4766 7 8 0.8626 1.3999 -2.3633 8 7 2.6300 1.5089 -3.6998 9 6 1.7809 1.5576 -4.8927 10 6 1.4612 2.9927 -5.2234 11 1 1.8517 3.7889 -4.6069 12 6 0.6700 3.2893 -6.3129 13 7 0.1939 2.3197 -7.0633 14 14 0.2742 5.0682 -6.7233 15 1 1.5350 5.8084 -6.9832 16 1 -0.5866 5.1176 -7.9323 17 1 -0.4399 5.6926 -5.5808 18 6 4.0882 1.5458 -3.8368 19 6 4.6248 0.1187 -3.9638 20 8 4.1458 -0.4640 -5.1776 21 6 4.5918 -1.8042 -5.3945 22 6 2.9298 1.3849 1.2305 23 6 3.9053 0.4309 1.4521 24 6 4.7030 0.5066 2.5786 25 6 4.5191 1.5312 3.4880 26 6 3.5402 2.4824 3.2691 27 6 2.7454 2.4092 2.1404 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.5906 0.5106 -1.2951 32 1 3.5539 2.2879 -1.2056 33 1 2.3057 1.0998 -5.7312 34 1 0.8556 1.0137 -4.7024 35 1 -0.3624 2.5284 -7.8300 36 1 4.3552 2.1150 -4.7271 37 1 4.5237 2.0208 -2.9576 38 1 5.7145 0.1401 -3.9763 39 1 4.2827 -0.4750 -3.1161 40 1 4.1849 -2.1746 -6.3354 41 1 5.6808 -1.8223 -5.4369 42 1 4.2493 -2.4380 -4.5765 43 1 4.0462 -0.3720 0.7435 44 1 5.4680 -0.2363 2.7494 45 1 5.1405 1.5889 4.3694 46 1 3.3967 3.2832 3.9794 47 1 1.9807 3.1523 1.9692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129240196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:58 Heat of formation + Delta-G solvation = -38.283446 kcal Electronic energy + Delta-G solvation = -26889.302272 eV Core-core repulsion = 23230.722457 eV Total energy + Delta-G solvation = -3658.579815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.84635 -38.85357 -37.49830 -35.57917 -34.55913 -32.62492 -31.25617 -30.97739 -29.78904 -29.34633 -26.97729 -25.90961 -24.58771 -22.78559 -22.65429 -22.23914 -21.27657 -19.34173 -18.23074 -17.18406 -16.50150 -16.36108 -16.07108 -15.56048 -15.27756 -15.13557 -14.93382 -14.72254 -14.41312 -14.20331 -13.85950 -13.48530 -13.27802 -13.09376 -12.76721 -12.62896 -12.21706 -12.02102 -11.80456 -11.63892 -11.59483 -11.45829 -11.25738 -11.14843 -10.88971 -10.86385 -10.77151 -10.47633 -10.33758 -10.06322 -9.53212 -9.41372 -9.15253 -8.98365 -8.73953 -8.58291 -8.31206 -7.51987 -5.92609 -3.96601 1.29036 1.33100 2.71110 3.37527 3.41601 3.43766 3.54510 3.71588 4.00012 4.09642 4.52810 4.72589 4.78862 4.91025 5.03445 5.09052 5.22926 5.26426 5.28685 5.39376 5.41391 5.44401 5.47986 5.51113 5.52743 5.58669 5.61705 5.68262 5.80452 5.85797 5.93582 5.94075 5.94658 6.16363 6.24549 6.28003 6.40114 6.42864 6.65688 6.90469 6.99362 7.18087 7.32907 7.42955 7.64314 7.70227 8.05724 8.38174 8.58032 9.02568 9.22924 9.67241 11.15283 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.003857 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.972496 B = 7257.266356 C = 8440.967094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.150 4.150 3 C -0.004 4.004 4 H 0.090 0.910 5 C -0.131 4.131 6 C 0.502 3.498 7 O -0.532 6.532 8 N -0.591 5.591 9 C 0.252 3.748 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.112 3.888 19 C 0.044 3.956 20 O -0.370 6.370 21 C 0.032 3.968 22 C -0.063 4.063 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.119 4.119 27 C -0.115 4.115 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.262 0.738 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.176 -5.838 16.805 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.168 4.168 3 C -0.023 4.023 4 H 0.108 0.892 5 C -0.171 4.171 6 C 0.289 3.711 7 O -0.409 6.409 8 N -0.323 5.323 9 C 0.133 3.867 10 C -0.563 4.563 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.013 4.013 19 C -0.034 4.034 20 O -0.288 6.288 21 C -0.065 4.065 22 C -0.063 4.063 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.137 4.137 27 C -0.134 4.134 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.278 -5.786 16.534 20.833 hybrid contribution 0.132 0.719 -0.214 0.762 sum 11.410 -5.067 16.319 20.547 Atomic orbital electron populations 1.23685 0.95835 1.01435 0.98276 1.22460 0.95888 0.96294 1.02144 1.19088 0.95319 0.97864 0.90011 0.89208 1.21775 0.98669 1.03354 0.93280 1.20251 0.88887 0.77695 0.84316 1.90671 1.14584 1.49603 1.86002 1.48168 1.05546 1.70822 1.07756 1.19252 0.90079 0.96731 0.80686 1.21446 1.31118 0.92581 1.11189 0.92792 1.24911 0.95749 0.97226 0.96177 1.69937 1.34618 1.31445 1.17334 0.86621 0.78244 0.85209 0.77666 1.20358 1.21276 1.20321 1.21493 0.82587 0.94126 1.03119 1.23115 0.97062 0.95849 0.87353 1.88114 1.73217 1.27333 1.40168 1.22697 0.98013 0.84279 1.01462 1.19915 0.95842 0.94664 0.95925 1.21015 0.95704 0.98794 0.97667 1.21115 0.99520 0.98475 0.94740 1.21098 0.98746 0.95492 0.99483 1.21123 0.96075 0.98987 0.97553 1.21132 0.99703 0.98235 0.94280 0.89170 0.88394 0.88244 0.89846 0.89403 0.93877 0.94381 0.92857 0.89117 0.90155 0.93191 0.93819 0.89786 0.94705 0.94656 0.86198 0.86333 0.86469 0.86277 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 13.22 29.01 0.38 -1.98 16 2 C -0.15 -2.17 7.40 -36.03 -0.27 -2.44 16 3 C 0.00 -0.06 1.99 -92.93 -0.18 -0.24 16 4 H 0.09 1.41 7.33 -51.92 -0.38 1.03 16 5 C -0.13 -1.90 3.46 -27.88 -0.10 -2.00 16 6 C 0.50 10.23 7.42 -10.98 -0.08 10.15 16 7 O -0.53 -12.93 13.75 5.55 0.08 -12.86 16 8 N -0.59 -12.59 2.42 -175.06 -0.42 -13.01 16 9 C 0.25 6.77 4.98 -5.20 -0.03 6.74 16 10 C -0.52 -15.19 9.39 -34.44 -0.32 -15.52 16 11 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 14 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 18 C 0.11 1.82 5.62 -4.04 -0.02 1.80 16 19 C 0.04 0.63 6.28 37.16 0.23 0.86 16 20 O -0.37 -6.43 9.53 -35.23 -0.34 -6.76 16 21 C 0.03 0.42 11.01 101.05 1.11 1.53 16 22 C -0.06 -0.76 4.77 -104.63 -0.50 -1.26 16 23 C -0.11 -1.22 8.86 -39.58 -0.35 -1.57 16 24 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 25 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.12 -1.31 9.67 -39.58 -0.38 -1.69 16 28 H 0.09 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.10 1.58 7.83 -52.49 -0.41 1.16 16 30 H 0.10 1.30 8.00 -52.49 -0.42 0.88 16 31 H 0.08 1.04 6.74 -51.93 -0.35 0.69 16 32 H 0.09 1.16 7.40 -51.93 -0.38 0.78 16 33 H 0.04 1.22 7.11 -51.93 -0.37 0.85 16 34 H 0.04 1.17 7.42 -51.93 -0.39 0.78 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.09 1.59 8.07 -51.93 -0.42 1.17 16 37 H 0.08 1.03 6.43 -51.93 -0.33 0.70 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.59 7.32 -51.93 -0.38 0.20 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.12 1.15 7.60 -52.48 -0.40 0.75 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.29 7.95 -52.49 -0.42 0.87 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -34.62 389.63 -8.47 -43.09 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.58 Total: 1.59 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.79 Total: -8.65 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.31 Total: -39.59 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.26 Total: -19.62 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.62 -8.47 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129240196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.808 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds