Wall clock time and date at job start Tue Mar 31 2020 12:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00059 * 2 1 4 4 H 1.09009 * 109.46724 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47406 * 240.00179 * 3 2 1 6 6 C 1.50702 * 109.47159 * 64.99564 * 5 3 2 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 3 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 3 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 C 1.50697 * 109.46949 * 90.00203 * 9 8 6 11 11 H 1.08004 * 120.00186 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00081 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00096 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00103 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46927 * 59.99717 * 14 12 10 16 16 H 1.48496 * 109.47287 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47040 * 299.99940 * 14 12 10 18 18 C 1.46506 * 120.00264 * 0.28128 * 8 6 5 19 19 C 1.52998 * 109.47320 * 89.99349 * 18 8 6 20 20 O 1.42902 * 109.46765 * 65.00041 * 19 18 8 21 21 C 1.42904 * 113.99770 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.46952 * 119.99665 * 3 2 1 23 23 C 1.38232 * 120.00016 * 59.73357 * 22 3 2 24 24 C 1.38241 * 120.00239 * 179.78371 * 23 22 3 25 25 C 1.38235 * 119.99546 * 0.44154 * 24 23 22 26 26 C 1.38232 * 120.00296 * 359.80940 * 25 24 23 27 27 C 1.38239 * 119.99908 * 239.99826 * 22 3 2 28 28 H 1.08001 * 119.99830 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00292 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00001 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47066 * 304.99767 * 5 3 2 32 32 H 1.08994 * 109.47405 * 184.99597 * 5 3 2 33 33 H 1.09001 * 109.47567 * 210.00057 * 9 8 6 34 34 H 1.09005 * 109.47076 * 330.00563 * 9 8 6 35 35 H 0.96991 * 119.99957 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.46996 * 209.99677 * 18 8 6 37 37 H 1.09001 * 109.46578 * 329.99540 * 18 8 6 38 38 H 1.08993 * 109.47026 * 185.00460 * 19 18 8 39 39 H 1.08999 * 109.47226 * 305.00909 * 19 18 8 40 40 H 1.09002 * 109.46990 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47260 * 300.00210 * 21 20 19 42 42 H 1.08999 * 109.47112 * 60.00586 * 21 20 19 43 43 H 1.08004 * 119.99911 * 359.97438 * 23 22 3 44 44 H 1.07996 * 120.00166 * 180.27338 * 24 23 22 45 45 H 1.07997 * 119.99493 * 179.83656 * 25 24 23 46 46 H 1.08002 * 120.00413 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.00135 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0698 1.4301 -2.4766 7 8 0.8626 1.3999 -2.3633 8 7 2.6300 1.5089 -3.6998 9 6 1.7809 1.5576 -4.8927 10 6 1.4612 2.9927 -5.2234 11 1 1.8517 3.7889 -4.6069 12 6 0.6700 3.2893 -6.3129 13 7 0.1939 2.3197 -7.0633 14 14 0.2742 5.0682 -6.7233 15 1 1.5350 5.8084 -6.9832 16 1 -0.5866 5.1176 -7.9323 17 1 -0.4399 5.6926 -5.5808 18 6 4.0882 1.5458 -3.8368 19 6 4.6248 0.1187 -3.9638 20 8 4.1458 -0.4640 -5.1776 21 6 4.5918 -1.8042 -5.3945 22 6 2.9298 1.3849 1.2305 23 6 3.9053 0.4309 1.4521 24 6 4.7030 0.5066 2.5786 25 6 4.5191 1.5312 3.4880 26 6 3.5402 2.4824 3.2691 27 6 2.7454 2.4092 2.1404 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.5906 0.5106 -1.2951 32 1 3.5539 2.2879 -1.2056 33 1 2.3057 1.0998 -5.7312 34 1 0.8556 1.0137 -4.7024 35 1 -0.3624 2.5284 -7.8300 36 1 4.3552 2.1150 -4.7271 37 1 4.5237 2.0208 -2.9576 38 1 5.7145 0.1401 -3.9763 39 1 4.2827 -0.4750 -3.1161 40 1 4.1849 -2.1746 -6.3354 41 1 5.6808 -1.8223 -5.4369 42 1 4.2493 -2.4380 -4.5765 43 1 4.0462 -0.3720 0.7435 44 1 5.4680 -0.2363 2.7494 45 1 5.1405 1.5889 4.3694 46 1 3.3967 3.2832 3.9794 47 1 1.9807 3.1523 1.9692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129240196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:57 Heat of formation + Delta-G solvation = -58.678479 kcal Electronic energy + Delta-G solvation = -26890.186667 eV Core-core repulsion = 23230.722457 eV Total energy + Delta-G solvation = -3659.464210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.07349 -40.01077 -38.72443 -36.84558 -36.10115 -34.76608 -32.32808 -31.72492 -31.26652 -30.52598 -28.74113 -27.06544 -25.97791 -24.33081 -23.73077 -23.47036 -22.24018 -20.52373 -19.71708 -18.60561 -18.27667 -17.52054 -17.36780 -16.90696 -16.67334 -16.28212 -16.26627 -15.84741 -15.80870 -15.35804 -15.20542 -14.62527 -14.34104 -14.26502 -14.13498 -13.81133 -13.59110 -13.45280 -13.23364 -13.04038 -12.92300 -12.73415 -12.71099 -12.58957 -12.40570 -12.19667 -12.09379 -11.90580 -11.76744 -11.66297 -11.52083 -10.61446 -10.57563 -10.49925 -10.02817 -9.73486 -9.53427 -9.30804 -8.16859 -6.31818 0.50478 0.58430 1.35842 1.40550 1.47704 1.53957 1.96740 2.34500 2.50454 2.96919 3.00799 3.12070 3.63633 3.76475 4.05509 4.12066 4.18858 4.21246 4.27213 4.28905 4.37317 4.39477 4.43516 4.54231 4.55359 4.57535 4.64048 4.70043 4.75827 4.79733 4.87564 4.98289 5.01043 5.09592 5.17576 5.26266 5.27049 5.33343 5.63100 5.65456 5.70489 5.76612 5.81142 5.94292 6.03187 6.14395 6.20267 6.38157 6.77615 6.93252 7.33867 7.61382 8.89686 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.003857 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.972496 B = 7257.266356 C = 8440.967094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 C 0.001 3.999 4 H 0.062 0.938 5 C -0.113 4.113 6 C 0.492 3.508 7 O -0.582 6.582 8 N -0.599 5.599 9 C 0.275 3.725 10 C -0.541 4.541 11 H 0.052 0.948 12 C 0.005 3.995 13 N -0.930 5.930 14 Si 0.966 3.034 15 H -0.260 1.260 16 H -0.279 1.279 17 H -0.277 1.277 18 C 0.104 3.896 19 C 0.045 3.955 20 O -0.419 6.419 21 C 0.029 3.971 22 C -0.076 4.076 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.125 4.125 27 C -0.133 4.133 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.023 0.977 34 H -0.014 1.014 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.133 0.867 44 H 0.145 0.855 45 H 0.143 0.857 46 H 0.137 0.863 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.450 -5.653 18.739 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.163 4.163 3 C -0.018 4.018 4 H 0.080 0.920 5 C -0.153 4.153 6 C 0.281 3.719 7 O -0.463 6.463 8 N -0.329 5.329 9 C 0.154 3.846 10 C -0.580 4.580 11 H 0.070 0.930 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.790 3.210 15 H -0.185 1.185 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.019 4.019 19 C -0.032 4.032 20 O -0.338 6.338 21 C -0.067 4.067 22 C -0.076 4.076 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.152 4.152 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.041 0.959 34 H 0.004 0.996 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.160 0.840 46 H 0.155 0.845 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.610 -5.607 18.487 24.221 hybrid contribution -0.856 0.615 -0.770 1.305 sum 13.754 -4.992 17.717 22.978 Atomic orbital electron populations 1.23724 0.96598 1.01103 1.00167 1.22745 0.95746 0.97432 1.00405 1.18958 0.95149 0.96565 0.91129 0.91998 1.21737 0.97910 1.05779 0.89869 1.21314 0.89035 0.76137 0.85408 1.90651 1.17189 1.51619 1.86793 1.48140 1.07414 1.70926 1.06467 1.18540 0.88722 0.94939 0.82424 1.21758 1.31440 0.93410 1.11406 0.92951 1.25871 0.95391 1.02083 0.95975 1.70077 1.35171 1.33904 1.17827 0.85500 0.78670 0.79391 0.77420 1.18468 1.20423 1.20302 1.21854 0.79468 0.96270 1.04265 1.23192 0.99196 0.94042 0.86751 1.88055 1.74579 1.29464 1.41723 1.22843 0.99732 0.82552 1.01621 1.19700 0.96598 0.96036 0.95299 1.21186 0.95327 0.98575 0.98556 1.21448 0.99546 0.98879 0.93987 1.21473 0.98334 0.94788 1.00160 1.21375 0.95865 0.99806 0.97222 1.21243 1.00342 0.98406 0.95166 0.88055 0.90426 0.86195 0.86593 0.87254 0.95904 0.99573 0.92623 0.90942 0.85954 0.89084 0.92647 0.90343 0.91896 0.93703 0.84891 0.83762 0.83952 0.84541 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.73 13.22 67.78 0.90 -4.83 16 2 C -0.15 -4.20 7.40 25.65 0.19 -4.01 16 3 C 0.00 0.03 1.99 -12.29 -0.02 0.00 16 4 H 0.06 2.04 7.33 -2.38 -0.02 2.03 16 5 C -0.11 -3.11 3.46 29.85 0.10 -3.00 16 6 C 0.49 20.36 7.42 87.66 0.65 21.01 16 7 O -0.58 -29.86 13.75 -3.04 -0.04 -29.90 16 8 N -0.60 -25.94 2.42 -826.15 -2.00 -27.93 16 9 C 0.28 15.63 4.98 85.63 0.43 16.06 16 10 C -0.54 -32.49 9.39 25.60 0.24 -32.25 16 11 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 12 C 0.01 0.32 5.46 84.66 0.46 0.78 16 13 N -0.93 -58.82 13.29 21.45 0.28 -58.53 16 14 Si 0.97 46.51 29.54 68.60 2.03 48.54 16 15 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 18 C 0.10 3.26 5.62 86.38 0.49 3.74 16 19 C 0.05 1.18 6.28 71.98 0.45 1.63 16 20 O -0.42 -14.37 9.53 -148.98 -1.42 -15.78 16 21 C 0.03 0.70 11.01 113.37 1.25 1.95 16 22 C -0.08 -1.71 4.77 -19.87 -0.09 -1.80 16 23 C -0.12 -2.14 8.86 22.27 0.20 -1.94 16 24 C -0.12 -1.81 10.05 22.27 0.22 -1.58 16 25 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 26 C -0.12 -2.17 10.05 22.27 0.22 -1.94 16 27 C -0.13 -2.88 9.67 22.27 0.22 -2.67 16 28 H 0.10 2.90 8.06 -2.91 -0.02 2.87 16 29 H 0.08 2.74 7.83 -2.91 -0.02 2.72 16 30 H 0.12 2.93 8.00 -2.91 -0.02 2.91 16 31 H 0.12 2.45 6.74 -2.38 -0.02 2.43 16 32 H 0.11 2.57 7.40 -2.39 -0.02 2.56 16 33 H 0.02 1.37 7.11 -2.39 -0.02 1.36 16 34 H -0.01 -0.92 7.42 -2.38 -0.02 -0.93 16 35 H 0.26 15.73 8.31 -92.72 -0.77 14.96 16 36 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 37 H 0.12 2.73 6.43 -2.39 -0.02 2.71 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.30 7.32 -2.39 -0.02 1.28 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.13 1.99 7.60 -2.91 -0.02 1.97 16 44 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 47 H 0.12 2.51 7.95 -2.91 -0.02 2.49 16 Total: -1.00 -80.91 389.63 5.90 -75.02 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.93 Total: 19.18 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 6.12 Total: -10.58 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -1.71 Total: -86.47 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.46 Total: -45.69 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -80.91 5.90 -75.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129240196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.338 kcal (2) G-P(sol) polarization free energy of solvation -80.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds