Wall clock time and date at job start Tue Mar 31 2020 12:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99918 * 2 1 4 4 C 1.50693 * 109.47121 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00240 * 270.02087 * 4 3 2 6 6 C 1.38210 * 120.00243 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99960 * 359.81177 * 6 5 4 8 8 C 1.38208 * 119.99779 * 0.41627 * 7 6 5 9 9 C 1.50699 * 119.99843 * 179.81064 * 8 7 6 10 10 C 1.50703 * 109.47310 * 269.72904 * 9 8 7 11 11 O 1.21281 * 119.99837 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00021 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99786 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46992 * 90.00095 * 13 12 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.46504 * 119.99832 * 0.02562 * 12 10 9 23 23 C 1.53002 * 109.46810 * 269.99624 * 22 12 10 24 24 C 1.53002 * 117.49875 * 243.62335 * 23 22 12 25 25 C 1.52999 * 117.49621 * 175.00094 * 23 22 12 26 26 C 1.38215 * 120.00287 * 89.99749 * 4 3 2 27 27 H 1.08996 * 109.47028 * 299.99882 * 1 2 3 28 28 H 1.08997 * 109.47158 * 60.00322 * 1 2 3 29 29 H 1.09007 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47090 * 59.99747 * 3 2 1 31 31 H 1.08999 * 109.46727 * 299.99723 * 3 2 1 32 32 H 1.08004 * 119.99581 * 359.97438 * 5 4 3 33 33 H 1.08006 * 120.00190 * 180.02562 * 6 5 4 34 34 H 1.07993 * 119.99875 * 180.23137 * 7 6 5 35 35 H 1.09000 * 109.47002 * 149.72974 * 9 8 7 36 36 H 1.08999 * 109.47419 * 29.72703 * 9 8 7 37 37 H 1.09002 * 109.47391 * 330.00086 * 13 12 10 38 38 H 1.09001 * 109.46813 * 210.00142 * 13 12 10 39 39 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 40 40 H 1.08992 * 109.47334 * 29.99480 * 22 12 10 41 41 H 1.08994 * 109.46680 * 150.00103 * 22 12 10 42 42 H 1.09004 * 115.54776 * 29.33368 * 23 22 12 43 43 H 1.09001 * 117.49844 * 0.02562 * 24 23 22 44 44 H 1.09006 * 117.49553 * 145.02358 * 24 23 22 45 45 H 1.09003 * 117.49630 * 214.97900 * 25 23 22 46 46 H 1.08991 * 117.50023 * 0.02562 * 25 23 22 47 47 H 1.08002 * 119.99592 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2011 1.1318 1.1983 6 6 5.5788 1.0221 1.1989 7 6 6.2681 0.9633 0.0018 8 6 5.5801 1.0228 -1.1954 9 6 6.3318 0.9630 -2.5002 10 6 6.6942 2.3595 -2.9357 11 8 6.3740 3.3097 -2.2534 12 7 7.3749 2.5524 -4.0828 13 6 7.7267 3.9100 -4.5064 14 6 9.0734 4.2798 -3.9401 15 1 9.6134 3.5740 -3.3265 16 6 9.6165 5.5188 -4.2064 17 7 10.7920 5.8413 -3.7126 18 14 8.6827 6.7393 -5.2684 19 1 7.8133 7.5808 -4.4074 20 1 9.6477 7.6045 -5.9932 21 1 7.8448 6.0029 -6.2486 22 6 7.7622 1.4044 -4.9066 23 6 9.1418 0.9066 -4.4712 24 6 10.2792 0.9958 -5.4907 25 6 9.6759 -0.3644 -5.1347 26 6 4.2019 1.1317 -1.1960 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.6624 1.1747 2.1334 33 1 6.1168 0.9789 2.1344 34 1 7.3444 0.8739 0.0023 35 1 5.7044 0.4968 -3.2599 36 1 7.2408 0.3760 -2.3693 37 1 6.9748 4.6104 -4.1427 38 1 7.7662 3.9521 -5.5949 39 1 11.1739 6.7131 -3.8995 40 1 7.0316 0.6052 -4.7824 41 1 7.7980 1.7045 -5.9539 42 1 9.3912 1.0699 -3.4227 43 1 10.0447 1.4097 -6.4714 44 1 11.2773 1.2181 -5.1130 45 1 10.2771 -1.0370 -4.5229 46 1 9.0447 -0.8456 -5.8816 47 1 3.6639 1.1746 -2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189131735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:08 Heat of formation + Delta-G solvation = -28.794661 kcal Electronic energy + Delta-G solvation = -26361.141841 eV Core-core repulsion = 22702.973491 eV Total energy + Delta-G solvation = -3658.168350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.86375 -38.88268 -37.65968 -36.97002 -34.42061 -33.01512 -32.37502 -31.60318 -28.99281 -27.55846 -27.10447 -25.96365 -25.40735 -22.69341 -21.98944 -21.90069 -20.71034 -20.46296 -18.43567 -16.85742 -16.68573 -16.49536 -16.38964 -16.16238 -15.74313 -15.37338 -15.15929 -14.71455 -14.41319 -14.06965 -13.89323 -13.48864 -12.99830 -12.92702 -12.64826 -12.48971 -12.38184 -12.37255 -12.19014 -11.85564 -11.61290 -11.58308 -11.28270 -11.16606 -11.01133 -10.86406 -10.82749 -10.52162 -10.15643 -9.97305 -9.90215 -9.58546 -9.43938 -9.08654 -8.70684 -8.54438 -8.47171 -7.71676 -6.04360 -4.01348 1.39515 1.53544 3.30460 3.34051 3.36473 3.38561 3.51765 3.81902 4.11361 4.25232 4.42768 4.73992 4.78184 4.95479 5.01043 5.07212 5.09292 5.16323 5.17859 5.23763 5.25229 5.28091 5.30371 5.40233 5.45536 5.47334 5.60301 5.67300 5.72119 5.76780 5.85038 5.86491 6.02567 6.13314 6.18216 6.32201 6.46852 6.56932 6.62047 6.64264 6.73011 6.75815 6.92041 6.96465 7.12434 7.36909 7.65441 8.26115 8.51960 8.97436 9.03058 9.56623 11.09168 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.003366 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.966893 B = 8315.718957 C = 9207.190607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.105 3.895 4 C -0.096 4.096 5 C -0.104 4.104 6 C -0.121 4.121 7 C -0.095 4.095 8 C -0.057 4.057 9 C -0.104 4.104 10 C 0.510 3.490 11 O -0.531 6.531 12 N -0.592 5.592 13 C 0.217 3.783 14 C -0.517 4.517 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.873 3.127 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.146 3.854 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.191 4.191 26 C -0.084 4.084 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 -14.854 2.965 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.029 3.971 4 C -0.096 4.096 5 C -0.122 4.122 6 C -0.139 4.139 7 C -0.113 4.113 8 C -0.058 4.058 9 C -0.144 4.144 10 C 0.297 3.703 11 O -0.407 6.407 12 N -0.324 5.324 13 C 0.096 3.904 14 C -0.555 4.555 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.192 1.192 22 C 0.021 3.979 23 C -0.175 4.175 24 C -0.197 4.197 25 C -0.228 4.228 26 C -0.102 4.102 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.209 -14.324 3.313 20.446 hybrid contribution -0.291 1.069 -0.564 1.243 sum -14.500 -13.255 2.749 19.836 Atomic orbital electron populations 1.22745 0.81262 1.02679 0.99963 1.87976 1.19368 1.27752 1.95402 1.21340 0.90157 0.84772 1.00857 1.19411 0.93533 1.03036 0.93614 1.20930 0.94348 0.99851 0.97090 1.21046 0.94108 1.00817 0.97957 1.21061 0.99883 0.98393 0.91954 1.19334 0.93276 0.99022 0.94119 1.20777 1.01469 0.96756 0.95402 1.20202 0.78711 0.90308 0.81096 1.90695 1.54156 1.43318 1.52540 1.47906 1.54186 1.08277 1.22001 1.19663 0.97113 0.78769 0.94820 1.21293 1.01278 1.01081 1.31895 0.90583 1.24837 0.94782 0.97717 0.95714 1.69893 1.16918 1.21732 1.45286 0.86907 0.80008 0.81972 0.81108 1.20048 1.21198 1.19188 1.21038 0.93487 0.88123 0.95219 1.22714 0.95590 0.99991 0.99160 1.22863 0.98450 0.98427 0.99980 1.22975 1.04667 0.91152 1.04033 1.20802 0.93534 0.98573 0.97322 0.94138 0.94059 0.89667 0.92513 0.92405 0.86374 0.85993 0.86001 0.88650 0.88177 0.94735 0.95488 0.92722 0.91084 0.90633 0.87709 0.88986 0.88970 0.89326 0.89255 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.50 10.69 -35.23 -0.38 -4.88 16 3 C 0.10 1.18 6.06 36.00 0.22 1.40 16 4 C -0.10 -1.30 5.51 -104.63 -0.58 -1.88 16 5 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 6 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 7 C -0.09 -1.41 9.70 -39.58 -0.38 -1.79 16 8 C -0.06 -0.87 4.37 -104.63 -0.46 -1.33 16 9 C -0.10 -1.53 4.38 -29.03 -0.13 -1.65 16 10 C 0.51 10.20 7.67 -10.98 -0.08 10.12 16 11 O -0.53 -13.06 15.61 5.56 0.09 -12.98 16 12 N -0.59 -11.86 2.46 -175.06 -0.43 -12.29 16 13 C 0.22 5.25 4.27 -5.19 -0.02 5.22 16 14 C -0.52 -14.59 9.94 -34.44 -0.34 -14.93 16 15 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 18 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 19 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 22 C 0.15 2.23 5.54 -4.04 -0.02 2.21 16 23 C -0.16 -2.40 5.94 -90.62 -0.54 -2.94 16 24 C -0.16 -2.45 10.18 -26.73 -0.27 -2.72 16 25 C -0.19 -2.33 10.25 -26.73 -0.27 -2.61 16 26 C -0.08 -1.23 9.36 -39.58 -0.37 -1.60 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.10 1.13 7.35 -51.93 -0.38 0.75 16 36 H 0.10 1.31 7.97 -51.93 -0.41 0.90 16 37 H 0.03 0.90 6.85 -51.93 -0.36 0.55 16 38 H 0.03 0.63 6.95 -51.93 -0.36 0.27 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.07 0.85 6.44 -51.93 -0.33 0.52 16 41 H 0.08 1.12 7.63 -51.93 -0.40 0.72 16 42 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 43 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 44 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -34.83 393.32 -9.45 -44.27 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.74 Total: 2.78 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -3.02 Total: -12.93 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.34 Total: -39.19 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.29 Total: -17.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.83 -9.45 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189131735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.479 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds