Wall clock time and date at job start Tue Mar 31 2020 12:34:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.42907 * 113.99918 * 2 1
4 4 C 1.50693 * 109.47121 * 179.97438 * 3 2 1
5 5 C 1.38261 * 120.00240 * 270.02087 * 4 3 2
6 6 C 1.38210 * 120.00243 * 179.97438 * 5 4 3
7 7 C 1.38262 * 119.99960 * 359.81177 * 6 5 4
8 8 C 1.38208 * 119.99779 * 0.41627 * 7 6 5
9 9 C 1.50699 * 119.99843 * 179.81064 * 8 7 6
10 10 C 1.50703 * 109.47310 * 269.72904 * 9 8 7
11 11 O 1.21281 * 119.99837 * 0.02562 * 10 9 8
12 12 N 1.34781 * 120.00021 * 179.97438 * 10 9 8
13 13 C 1.46499 * 119.99786 * 179.97438 * 12 10 9
14 14 C 1.50701 * 109.46992 * 90.00095 * 13 12 10
15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12
16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12
17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13
18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13
19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14
20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14
21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14
22 22 C 1.46504 * 119.99832 * 0.02562 * 12 10 9
23 23 C 1.53002 * 109.46810 * 269.99624 * 22 12 10
24 24 C 1.53002 * 117.49875 * 243.62335 * 23 22 12
25 25 C 1.52999 * 117.49621 * 175.00094 * 23 22 12
26 26 C 1.38215 * 120.00287 * 89.99749 * 4 3 2
27 27 H 1.08996 * 109.47028 * 299.99882 * 1 2 3
28 28 H 1.08997 * 109.47158 * 60.00322 * 1 2 3
29 29 H 1.09007 * 109.46724 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47090 * 59.99747 * 3 2 1
31 31 H 1.08999 * 109.46727 * 299.99723 * 3 2 1
32 32 H 1.08004 * 119.99581 * 359.97438 * 5 4 3
33 33 H 1.08006 * 120.00190 * 180.02562 * 6 5 4
34 34 H 1.07993 * 119.99875 * 180.23137 * 7 6 5
35 35 H 1.09000 * 109.47002 * 149.72974 * 9 8 7
36 36 H 1.08999 * 109.47419 * 29.72703 * 9 8 7
37 37 H 1.09002 * 109.47391 * 330.00086 * 13 12 10
38 38 H 1.09001 * 109.46813 * 210.00142 * 13 12 10
39 39 H 0.97002 * 119.99739 * 180.02562 * 17 16 14
40 40 H 1.08992 * 109.47334 * 29.99480 * 22 12 10
41 41 H 1.08994 * 109.46680 * 150.00103 * 22 12 10
42 42 H 1.09004 * 115.54776 * 29.33368 * 23 22 12
43 43 H 1.09001 * 117.49844 * 0.02562 * 24 23 22
44 44 H 1.09006 * 117.49553 * 145.02358 * 24 23 22
45 45 H 1.09003 * 117.49630 * 214.97900 * 25 23 22
46 46 H 1.08991 * 117.50023 * 0.02562 * 25 23 22
47 47 H 1.08002 * 119.99592 * 0.02562 * 26 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5124 1.1866 0.0006
5 6 4.2011 1.1318 1.1983
6 6 5.5788 1.0221 1.1989
7 6 6.2681 0.9633 0.0018
8 6 5.5801 1.0228 -1.1954
9 6 6.3318 0.9630 -2.5002
10 6 6.6942 2.3595 -2.9357
11 8 6.3740 3.3097 -2.2534
12 7 7.3749 2.5524 -4.0828
13 6 7.7267 3.9100 -4.5064
14 6 9.0734 4.2798 -3.9401
15 1 9.6134 3.5740 -3.3265
16 6 9.6165 5.5188 -4.2064
17 7 10.7920 5.8413 -3.7126
18 14 8.6827 6.7393 -5.2684
19 1 7.8133 7.5808 -4.4074
20 1 9.6477 7.6045 -5.9932
21 1 7.8448 6.0029 -6.2486
22 6 7.7622 1.4044 -4.9066
23 6 9.1418 0.9066 -4.4712
24 6 10.2792 0.9958 -5.4907
25 6 9.6759 -0.3644 -5.1347
26 6 4.2019 1.1317 -1.1960
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0278 -0.0005
30 1 1.6885 1.8465 0.8900
31 1 1.6886 1.8464 -0.8900
32 1 3.6624 1.1747 2.1334
33 1 6.1168 0.9789 2.1344
34 1 7.3444 0.8739 0.0023
35 1 5.7044 0.4968 -3.2599
36 1 7.2408 0.3760 -2.3693
37 1 6.9748 4.6104 -4.1427
38 1 7.7662 3.9521 -5.5949
39 1 11.1739 6.7131 -3.8995
40 1 7.0316 0.6052 -4.7824
41 1 7.7980 1.7045 -5.9539
42 1 9.3912 1.0699 -3.4227
43 1 10.0447 1.4097 -6.4714
44 1 11.2773 1.2181 -5.1130
45 1 10.2771 -1.0370 -4.5229
46 1 9.0447 -0.8456 -5.8816
47 1 3.6639 1.1746 -2.1316
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000189131735.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:34:08
Heat of formation + Delta-G solvation = -49.550676 kcal
Electronic energy + Delta-G solvation = -26362.041890 eV
Core-core repulsion = 22702.973491 eV
Total energy + Delta-G solvation = -3659.068399 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.178 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.16028 -40.10013 -38.54569 -38.23154 -36.06541 -34.63389 -33.99827 -32.62688
-30.74485 -28.65933 -28.06390 -27.46120 -26.20866 -24.46600 -23.11017 -23.03025
-22.00428 -21.63194 -19.91104 -19.00716 -17.91009 -17.73287 -17.30984 -17.13390
-17.05485 -16.48592 -16.36397 -16.00732 -15.83731 -15.47621 -15.04162 -14.77019
-14.71485 -14.28435 -14.00802 -13.64411 -13.58356 -13.46345 -13.38892 -13.26421
-13.09104 -12.77270 -12.57921 -12.48319 -12.32099 -12.25304 -11.97147 -11.94602
-11.82367 -11.65619 -11.22889 -10.82040 -10.76945 -10.64729 -10.59712 -9.75722
-9.59444 -9.40166 -8.29453 -6.31682 0.33937 0.47143 1.31502 1.35603
1.43182 1.81073 2.29999 2.32639 2.68700 3.04796 3.05232 3.19686
3.67808 3.79754 3.85789 3.98673 3.99917 4.11915 4.18533 4.25403
4.28670 4.34652 4.44311 4.52128 4.52770 4.56406 4.58489 4.61819
4.67861 4.74502 4.77745 4.87747 4.87920 4.91250 4.96946 5.10020
5.14855 5.16000 5.35383 5.37977 5.50177 5.52192 5.60973 5.66888
5.69615 6.07947 6.20947 6.29937 6.69288 6.73298 7.26936 7.46395
8.87566
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.013039 B = 0.003366 C = 0.003040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2146.966893 B = 8315.718957 C = 9207.190607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.408 6.408
3 C 0.107 3.893
4 C -0.106 4.106
5 C -0.109 4.109
6 C -0.128 4.128
7 C -0.118 4.118
8 C -0.077 4.077
9 C -0.089 4.089
10 C 0.503 3.497
11 O -0.587 6.587
12 N -0.597 5.597
13 C 0.225 3.775
14 C -0.515 4.515
15 H 0.032 0.968
16 C 0.009 3.991
17 N -0.948 5.948
18 Si 0.941 3.059
19 H -0.280 1.280
20 H -0.278 1.278
21 H -0.238 1.238
22 C 0.142 3.858
23 C -0.175 4.175
24 C -0.187 4.187
25 C -0.143 4.143
26 C -0.098 4.098
27 H 0.052 0.948
28 H 0.049 0.951
29 H 0.097 0.903
30 H 0.072 0.928
31 H 0.063 0.937
32 H 0.142 0.858
33 H 0.143 0.857
34 H 0.119 0.881
35 H 0.132 0.868
36 H 0.115 0.885
37 H 0.015 0.985
38 H 0.046 0.954
39 H 0.265 0.735
40 H 0.115 0.885
41 H 0.086 0.914
42 H 0.072 0.928
43 H 0.095 0.905
44 H 0.068 0.932
45 H 0.100 0.900
46 H 0.123 0.877
47 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.821 -16.658 1.642 23.730
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.328 6.328
3 C 0.031 3.969
4 C -0.106 4.106
5 C -0.127 4.127
6 C -0.145 4.145
7 C -0.137 4.137
8 C -0.077 4.077
9 C -0.128 4.128
10 C 0.293 3.707
11 O -0.468 6.468
12 N -0.327 5.327
13 C 0.102 3.898
14 C -0.554 4.554
15 H 0.050 0.950
16 C -0.188 4.188
17 N -0.589 5.589
18 Si 0.765 3.235
19 H -0.206 1.206
20 H -0.203 1.203
21 H -0.161 1.161
22 C 0.020 3.980
23 C -0.194 4.194
24 C -0.224 4.224
25 C -0.180 4.180
26 C -0.116 4.116
27 H 0.071 0.929
28 H 0.068 0.932
29 H 0.116 0.884
30 H 0.090 0.910
31 H 0.081 0.919
32 H 0.160 0.840
33 H 0.160 0.840
34 H 0.137 0.863
35 H 0.150 0.850
36 H 0.133 0.867
37 H 0.033 0.967
38 H 0.064 0.936
39 H 0.074 0.926
40 H 0.133 0.867
41 H 0.104 0.896
42 H 0.090 0.910
43 H 0.114 0.886
44 H 0.086 0.914
45 H 0.119 0.881
46 H 0.141 0.859
47 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -16.762 -16.191 1.962 23.387
hybrid contribution 0.533 1.566 -0.040 1.655
sum -16.229 -14.625 1.922 21.931
Atomic orbital electron populations
1.22955 0.79373 1.03908 1.00983 1.87930 1.21458 1.27832 1.95607
1.21336 0.88696 0.85025 1.01870 1.19791 0.95092 1.02162 0.93523
1.21279 0.94346 0.98989 0.98081 1.21354 0.94676 1.00162 0.98342
1.21261 1.00074 0.99489 0.92827 1.19497 0.93871 0.99985 0.94363
1.20741 1.02743 0.93162 0.96195 1.21158 0.77460 0.91957 0.80169
1.90657 1.56369 1.45602 1.54123 1.47979 1.53913 1.08034 1.22815
1.19322 0.93920 0.81179 0.95333 1.21482 1.02704 1.00304 1.30906
0.95004 1.25783 0.95673 0.99962 0.97392 1.70053 1.18969 1.22528
1.47377 0.85812 0.78818 0.79252 0.79647 1.20559 1.20334 1.16111
1.21388 0.94257 0.87539 0.94838 1.22595 0.95866 1.03473 0.97484
1.22889 0.97430 1.02093 1.00018 1.23064 1.02690 0.89368 1.02855
1.21028 0.93447 0.98830 0.98310 0.92915 0.93225 0.88414 0.91003
0.91896 0.83995 0.83961 0.86266 0.85018 0.86667 0.96676 0.93565
0.92602 0.86672 0.89602 0.90980 0.88617 0.91357 0.88148 0.85933
0.85385
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.32 11.01 113.37 1.25 1.56 16
2 O -0.41 -8.75 10.69 -148.98 -1.59 -10.34 16
3 C 0.11 2.22 6.06 71.23 0.43 2.65 16
4 C -0.11 -2.75 5.51 -19.87 -0.11 -2.86 16
5 C -0.11 -2.70 9.70 22.27 0.22 -2.48 16
6 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16
7 C -0.12 -3.55 9.70 22.27 0.22 -3.33 16
8 C -0.08 -2.31 4.37 -19.87 -0.09 -2.40 16
9 C -0.09 -2.49 4.38 29.10 0.13 -2.36 16
10 C 0.50 20.17 7.67 87.66 0.67 20.84 16
11 O -0.59 -29.79 15.61 -3.03 -0.05 -29.84 16
12 N -0.60 -23.68 2.46 -826.15 -2.03 -25.71 16
13 C 0.22 10.92 4.27 85.63 0.37 11.29 16
14 C -0.52 -30.18 9.94 25.60 0.25 -29.93 16
15 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16
16 C 0.01 0.54 5.47 84.66 0.46 1.00 16
17 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16
18 Si 0.94 45.10 27.47 68.60 1.88 46.98 16
19 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16
20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
21 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16
22 C 0.14 4.03 5.54 86.38 0.48 4.51 16
23 C -0.17 -5.29 5.94 -10.79 -0.06 -5.35 16
24 C -0.19 -5.68 10.18 30.60 0.31 -5.36 16
25 C -0.14 -3.07 10.25 30.60 0.31 -2.76 16
26 C -0.10 -2.77 9.36 22.27 0.21 -2.56 16
27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
29 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16
30 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16
31 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16
32 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16
33 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16
34 H 0.12 3.47 8.06 -2.91 -0.02 3.44 16
35 H 0.13 2.67 7.35 -2.39 -0.02 2.65 16
36 H 0.12 2.86 7.97 -2.39 -0.02 2.84 16
37 H 0.02 0.80 6.85 -2.39 -0.02 0.78 16
38 H 0.05 2.07 6.95 -2.39 -0.02 2.05 16
39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16
40 H 0.12 2.25 6.44 -2.39 -0.02 2.24 16
41 H 0.09 2.28 7.63 -2.39 -0.02 2.26 16
42 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16
43 H 0.10 2.78 8.03 -2.39 -0.02 2.76 16
44 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16
45 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16
46 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16
47 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16
Total: -1.00 -80.78 393.32 4.67 -76.12
By element:
Atomic # 1 Polarization: 22.94 SS G_CDS: 0.88 Total: 23.82 kcal
Atomic # 6 Polarization: -25.92 SS G_CDS: 5.27 Total: -20.65 kcal
Atomic # 7 Polarization: -84.36 SS G_CDS: -1.73 Total: -86.09 kcal
Atomic # 8 Polarization: -38.54 SS G_CDS: -1.64 Total: -40.18 kcal
Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal
Total: -80.78 4.67 -76.12 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000189131735.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.565 kcal
(2) G-P(sol) polarization free energy of solvation -80.781 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.216 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.115 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.551 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds