Wall clock time and date at job start Tue Mar 31 2020 12:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99918 * 2 1 4 4 C 1.50693 * 109.47121 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00240 * 270.02087 * 4 3 2 6 6 C 1.38210 * 120.00243 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99960 * 359.81177 * 6 5 4 8 8 C 1.38208 * 119.99779 * 0.41627 * 7 6 5 9 9 C 1.50699 * 119.99843 * 179.81064 * 8 7 6 10 10 C 1.50703 * 109.47310 * 269.72904 * 9 8 7 11 11 O 1.21281 * 119.99837 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00021 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99786 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46992 * 90.00095 * 13 12 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.46504 * 119.99832 * 0.02562 * 12 10 9 23 23 C 1.53002 * 109.46810 * 269.99624 * 22 12 10 24 24 C 1.53002 * 117.49875 * 243.62335 * 23 22 12 25 25 C 1.52999 * 117.49621 * 175.00094 * 23 22 12 26 26 C 1.38215 * 120.00287 * 89.99749 * 4 3 2 27 27 H 1.08996 * 109.47028 * 299.99882 * 1 2 3 28 28 H 1.08997 * 109.47158 * 60.00322 * 1 2 3 29 29 H 1.09007 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47090 * 59.99747 * 3 2 1 31 31 H 1.08999 * 109.46727 * 299.99723 * 3 2 1 32 32 H 1.08004 * 119.99581 * 359.97438 * 5 4 3 33 33 H 1.08006 * 120.00190 * 180.02562 * 6 5 4 34 34 H 1.07993 * 119.99875 * 180.23137 * 7 6 5 35 35 H 1.09000 * 109.47002 * 149.72974 * 9 8 7 36 36 H 1.08999 * 109.47419 * 29.72703 * 9 8 7 37 37 H 1.09002 * 109.47391 * 330.00086 * 13 12 10 38 38 H 1.09001 * 109.46813 * 210.00142 * 13 12 10 39 39 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 40 40 H 1.08992 * 109.47334 * 29.99480 * 22 12 10 41 41 H 1.08994 * 109.46680 * 150.00103 * 22 12 10 42 42 H 1.09004 * 115.54776 * 29.33368 * 23 22 12 43 43 H 1.09001 * 117.49844 * 0.02562 * 24 23 22 44 44 H 1.09006 * 117.49553 * 145.02358 * 24 23 22 45 45 H 1.09003 * 117.49630 * 214.97900 * 25 23 22 46 46 H 1.08991 * 117.50023 * 0.02562 * 25 23 22 47 47 H 1.08002 * 119.99592 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2011 1.1318 1.1983 6 6 5.5788 1.0221 1.1989 7 6 6.2681 0.9633 0.0018 8 6 5.5801 1.0228 -1.1954 9 6 6.3318 0.9630 -2.5002 10 6 6.6942 2.3595 -2.9357 11 8 6.3740 3.3097 -2.2534 12 7 7.3749 2.5524 -4.0828 13 6 7.7267 3.9100 -4.5064 14 6 9.0734 4.2798 -3.9401 15 1 9.6134 3.5740 -3.3265 16 6 9.6165 5.5188 -4.2064 17 7 10.7920 5.8413 -3.7126 18 14 8.6827 6.7393 -5.2684 19 1 7.8133 7.5808 -4.4074 20 1 9.6477 7.6045 -5.9932 21 1 7.8448 6.0029 -6.2486 22 6 7.7622 1.4044 -4.9066 23 6 9.1418 0.9066 -4.4712 24 6 10.2792 0.9958 -5.4907 25 6 9.6759 -0.3644 -5.1347 26 6 4.2019 1.1317 -1.1960 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.6624 1.1747 2.1334 33 1 6.1168 0.9789 2.1344 34 1 7.3444 0.8739 0.0023 35 1 5.7044 0.4968 -3.2599 36 1 7.2408 0.3760 -2.3693 37 1 6.9748 4.6104 -4.1427 38 1 7.7662 3.9521 -5.5949 39 1 11.1739 6.7131 -3.8995 40 1 7.0316 0.6052 -4.7824 41 1 7.7980 1.7045 -5.9539 42 1 9.3912 1.0699 -3.4227 43 1 10.0447 1.4097 -6.4714 44 1 11.2773 1.2181 -5.1130 45 1 10.2771 -1.0370 -4.5229 46 1 9.0447 -0.8456 -5.8816 47 1 3.6639 1.1746 -2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189131735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:08 Heat of formation + Delta-G solvation = -49.550676 kcal Electronic energy + Delta-G solvation = -26362.041890 eV Core-core repulsion = 22702.973491 eV Total energy + Delta-G solvation = -3659.068399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16028 -40.10013 -38.54569 -38.23154 -36.06541 -34.63389 -33.99827 -32.62688 -30.74485 -28.65933 -28.06390 -27.46120 -26.20866 -24.46600 -23.11017 -23.03025 -22.00428 -21.63194 -19.91104 -19.00716 -17.91009 -17.73287 -17.30984 -17.13390 -17.05485 -16.48592 -16.36397 -16.00732 -15.83731 -15.47621 -15.04162 -14.77019 -14.71485 -14.28435 -14.00802 -13.64411 -13.58356 -13.46345 -13.38892 -13.26421 -13.09104 -12.77270 -12.57921 -12.48319 -12.32099 -12.25304 -11.97147 -11.94602 -11.82367 -11.65619 -11.22889 -10.82040 -10.76945 -10.64729 -10.59712 -9.75722 -9.59444 -9.40166 -8.29453 -6.31682 0.33937 0.47143 1.31502 1.35603 1.43182 1.81073 2.29999 2.32639 2.68700 3.04796 3.05232 3.19686 3.67808 3.79754 3.85789 3.98673 3.99917 4.11915 4.18533 4.25403 4.28670 4.34652 4.44311 4.52128 4.52770 4.56406 4.58489 4.61819 4.67861 4.74502 4.77745 4.87747 4.87920 4.91250 4.96946 5.10020 5.14855 5.16000 5.35383 5.37977 5.50177 5.52192 5.60973 5.66888 5.69615 6.07947 6.20947 6.29937 6.69288 6.73298 7.26936 7.46395 8.87566 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.003366 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.966893 B = 8315.718957 C = 9207.190607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.107 3.893 4 C -0.106 4.106 5 C -0.109 4.109 6 C -0.128 4.128 7 C -0.118 4.118 8 C -0.077 4.077 9 C -0.089 4.089 10 C 0.503 3.497 11 O -0.587 6.587 12 N -0.597 5.597 13 C 0.225 3.775 14 C -0.515 4.515 15 H 0.032 0.968 16 C 0.009 3.991 17 N -0.948 5.948 18 Si 0.941 3.059 19 H -0.280 1.280 20 H -0.278 1.278 21 H -0.238 1.238 22 C 0.142 3.858 23 C -0.175 4.175 24 C -0.187 4.187 25 C -0.143 4.143 26 C -0.098 4.098 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.015 0.985 38 H 0.046 0.954 39 H 0.265 0.735 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.100 0.900 46 H 0.123 0.877 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.821 -16.658 1.642 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.031 3.969 4 C -0.106 4.106 5 C -0.127 4.127 6 C -0.145 4.145 7 C -0.137 4.137 8 C -0.077 4.077 9 C -0.128 4.128 10 C 0.293 3.707 11 O -0.468 6.468 12 N -0.327 5.327 13 C 0.102 3.898 14 C -0.554 4.554 15 H 0.050 0.950 16 C -0.188 4.188 17 N -0.589 5.589 18 Si 0.765 3.235 19 H -0.206 1.206 20 H -0.203 1.203 21 H -0.161 1.161 22 C 0.020 3.980 23 C -0.194 4.194 24 C -0.224 4.224 25 C -0.180 4.180 26 C -0.116 4.116 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.133 0.867 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.119 0.881 46 H 0.141 0.859 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.762 -16.191 1.962 23.387 hybrid contribution 0.533 1.566 -0.040 1.655 sum -16.229 -14.625 1.922 21.931 Atomic orbital electron populations 1.22955 0.79373 1.03908 1.00983 1.87930 1.21458 1.27832 1.95607 1.21336 0.88696 0.85025 1.01870 1.19791 0.95092 1.02162 0.93523 1.21279 0.94346 0.98989 0.98081 1.21354 0.94676 1.00162 0.98342 1.21261 1.00074 0.99489 0.92827 1.19497 0.93871 0.99985 0.94363 1.20741 1.02743 0.93162 0.96195 1.21158 0.77460 0.91957 0.80169 1.90657 1.56369 1.45602 1.54123 1.47979 1.53913 1.08034 1.22815 1.19322 0.93920 0.81179 0.95333 1.21482 1.02704 1.00304 1.30906 0.95004 1.25783 0.95673 0.99962 0.97392 1.70053 1.18969 1.22528 1.47377 0.85812 0.78818 0.79252 0.79647 1.20559 1.20334 1.16111 1.21388 0.94257 0.87539 0.94838 1.22595 0.95866 1.03473 0.97484 1.22889 0.97430 1.02093 1.00018 1.23064 1.02690 0.89368 1.02855 1.21028 0.93447 0.98830 0.98310 0.92915 0.93225 0.88414 0.91003 0.91896 0.83995 0.83961 0.86266 0.85018 0.86667 0.96676 0.93565 0.92602 0.86672 0.89602 0.90980 0.88617 0.91357 0.88148 0.85933 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.75 10.69 -148.98 -1.59 -10.34 16 3 C 0.11 2.22 6.06 71.23 0.43 2.65 16 4 C -0.11 -2.75 5.51 -19.87 -0.11 -2.86 16 5 C -0.11 -2.70 9.70 22.27 0.22 -2.48 16 6 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 7 C -0.12 -3.55 9.70 22.27 0.22 -3.33 16 8 C -0.08 -2.31 4.37 -19.87 -0.09 -2.40 16 9 C -0.09 -2.49 4.38 29.10 0.13 -2.36 16 10 C 0.50 20.17 7.67 87.66 0.67 20.84 16 11 O -0.59 -29.79 15.61 -3.03 -0.05 -29.84 16 12 N -0.60 -23.68 2.46 -826.15 -2.03 -25.71 16 13 C 0.22 10.92 4.27 85.63 0.37 11.29 16 14 C -0.52 -30.18 9.94 25.60 0.25 -29.93 16 15 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 16 C 0.01 0.54 5.47 84.66 0.46 1.00 16 17 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 18 Si 0.94 45.10 27.47 68.60 1.88 46.98 16 19 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 22 C 0.14 4.03 5.54 86.38 0.48 4.51 16 23 C -0.17 -5.29 5.94 -10.79 -0.06 -5.35 16 24 C -0.19 -5.68 10.18 30.60 0.31 -5.36 16 25 C -0.14 -3.07 10.25 30.60 0.31 -2.76 16 26 C -0.10 -2.77 9.36 22.27 0.21 -2.56 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 31 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 32 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.12 3.47 8.06 -2.91 -0.02 3.44 16 35 H 0.13 2.67 7.35 -2.39 -0.02 2.65 16 36 H 0.12 2.86 7.97 -2.39 -0.02 2.84 16 37 H 0.02 0.80 6.85 -2.39 -0.02 0.78 16 38 H 0.05 2.07 6.95 -2.39 -0.02 2.05 16 39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.12 2.25 6.44 -2.39 -0.02 2.24 16 41 H 0.09 2.28 7.63 -2.39 -0.02 2.26 16 42 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 43 H 0.10 2.78 8.03 -2.39 -0.02 2.76 16 44 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 45 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -80.78 393.32 4.67 -76.12 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.88 Total: 23.82 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 5.27 Total: -20.65 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.73 Total: -86.09 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.64 Total: -40.18 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -80.78 4.67 -76.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189131735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.565 kcal (2) G-P(sol) polarization free energy of solvation -80.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds