Wall clock time and date at job start Tue Mar 31 2020 12:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00167 * 2 1 4 4 C 1.52997 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46801 * 65.00460 * 4 3 2 6 6 C 1.46494 * 120.00150 * 84.64816 * 5 4 3 7 7 C 1.50703 * 109.46914 * 264.86206 * 6 5 4 8 8 H 1.07993 * 120.00341 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99694 * 180.27872 * 7 6 5 10 10 N 1.31518 * 119.99559 * 179.72348 * 9 7 6 11 11 Si 1.86792 * 120.00353 * 359.72267 * 9 7 6 12 12 H 1.48496 * 109.47206 * 90.00245 * 11 9 7 13 13 H 1.48502 * 109.47427 * 210.00426 * 11 9 7 14 14 H 1.48507 * 109.47328 * 330.00438 * 11 9 7 15 15 C 1.34775 * 119.99639 * 264.63858 * 5 4 3 16 16 O 1.21282 * 120.00179 * 4.21274 * 15 5 4 17 17 C 1.50706 * 120.00167 * 184.20357 * 15 5 4 18 18 H 1.09003 * 109.67153 * 24.46385 * 17 15 5 19 19 C 1.53323 * 109.67789 * 145.00951 * 17 15 5 20 20 C 1.52732 * 108.38689 * 189.58498 * 19 17 15 21 21 C 1.50624 * 110.59134 * 308.89813 * 20 19 17 22 22 C 1.38914 * 117.75044 * 197.41932 * 21 20 19 23 23 C 1.37932 * 120.54196 * 180.56568 * 22 21 20 24 24 C 1.38267 * 119.77602 * 0.02562 * 23 22 21 25 25 C 1.37933 * 119.76707 * 359.88669 * 24 23 22 26 26 C 1.37668 * 122.56588 * 17.79289 * 21 20 19 27 27 C 1.50635 * 122.55823 * 359.25513 * 26 21 20 28 28 H 1.08997 * 109.47214 * 299.99988 * 1 2 3 29 29 H 1.09003 * 109.46470 * 60.00195 * 1 2 3 30 30 H 1.08998 * 109.46732 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47041 * 59.99592 * 3 2 1 32 32 H 1.09000 * 109.47000 * 300.00031 * 3 2 1 33 33 H 1.08994 * 109.47309 * 304.99877 * 4 3 2 34 34 H 1.09000 * 109.46830 * 185.00003 * 4 3 2 35 35 H 1.09007 * 109.47197 * 144.86270 * 6 5 4 36 36 H 1.08998 * 109.47624 * 24.86143 * 6 5 4 37 37 H 0.96995 * 119.99558 * 179.97438 * 10 9 7 38 38 H 1.08994 * 109.68446 * 309.31511 * 19 17 15 39 39 H 1.08998 * 109.68245 * 69.87452 * 19 17 15 40 40 H 1.08997 * 109.24910 * 188.61008 * 20 19 17 41 41 H 1.09002 * 109.21830 * 69.16996 * 20 19 17 42 42 H 1.07990 * 119.72814 * 0.62038 * 22 21 20 43 43 H 1.08001 * 120.11467 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.11398 * 179.86400 * 24 23 22 45 45 H 1.08001 * 119.72402 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.24816 * 257.49799 * 27 26 21 47 47 H 1.09000 * 109.25066 * 138.07684 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1753 1.3871 -2.4464 7 6 2.9285 1.3536 -3.2922 8 1 2.0738 0.7766 -2.9716 9 6 2.8812 2.0546 -4.4786 10 7 1.7951 2.0209 -5.2194 11 14 4.3598 3.0520 -5.0337 12 1 5.2501 2.1988 -5.8610 13 1 3.9002 4.2132 -5.8373 14 1 5.1046 3.5371 -3.8440 15 6 4.1999 -0.7641 -1.3024 16 8 3.9627 -1.4568 -0.3355 17 6 4.7440 -1.3885 -2.5614 18 1 5.2889 -0.6398 -3.1365 19 6 5.6820 -2.5463 -2.1999 20 6 6.3988 -3.0002 -3.4698 21 6 5.4076 -3.2568 -4.5746 22 6 5.8301 -4.0148 -5.6594 23 6 4.9734 -4.2752 -6.7086 24 6 3.6837 -3.7776 -6.6818 25 6 3.2618 -3.0263 -5.6047 26 6 4.1220 -2.7654 -4.5456 27 6 3.5938 -1.9437 -3.3989 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5686 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.0150 0.9962 -3.0213 36 1 4.3853 2.4146 -2.1495 37 1 1.7617 2.5143 -6.0538 38 1 6.4138 -2.2102 -1.4654 39 1 5.1028 -3.3736 -1.7898 40 1 6.9513 -3.9166 -3.2626 41 1 7.0959 -2.2239 -3.7854 42 1 6.8371 -4.4041 -5.6809 43 1 5.3090 -4.8656 -7.5484 44 1 3.0091 -3.9763 -7.5014 45 1 2.2541 -2.6384 -5.5842 46 1 2.9607 -2.5695 -2.7700 47 1 3.0032 -1.1162 -3.7919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223457633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:11 Heat of formation + Delta-G solvation = -65.697069 kcal Electronic energy + Delta-G solvation = -28063.126297 eV Core-core repulsion = 24403.357739 eV Total energy + Delta-G solvation = -3659.768559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05366 -38.83714 -37.15862 -35.36993 -34.91795 -32.57714 -32.18764 -30.45610 -29.50991 -28.41313 -27.56120 -25.82366 -23.93935 -23.00566 -22.48114 -21.80177 -21.66154 -19.37926 -17.91999 -17.06865 -16.57881 -16.12928 -15.97725 -15.40814 -15.25067 -14.93447 -14.58270 -14.46027 -14.13976 -13.85078 -13.53414 -13.24168 -13.10363 -12.81643 -12.61760 -12.39603 -12.22981 -12.16052 -11.85016 -11.80388 -11.61725 -11.35496 -11.10716 -11.02613 -10.83433 -10.79583 -10.57334 -10.44569 -10.22843 -10.20291 -9.98900 -9.54686 -9.06508 -8.82207 -8.65207 -8.41438 -8.16761 -7.67494 -6.21152 -4.20813 1.69096 1.72436 3.17529 3.24198 3.27351 3.47296 3.89519 4.08707 4.27014 4.38389 4.95884 5.00519 5.09346 5.25792 5.26740 5.31667 5.47369 5.53442 5.59785 5.63525 5.70244 5.71618 5.81573 5.84243 5.87567 5.91974 5.93430 6.02654 6.06133 6.11293 6.12283 6.26752 6.35078 6.39583 6.43274 6.44398 6.54543 6.62896 6.78627 6.80480 6.83044 6.87264 7.12532 7.37685 7.40408 7.45387 7.77356 8.21843 8.44694 8.86373 9.09344 9.39642 10.90816 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010073 B = 0.005858 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.133341 B = 4778.656578 C = 5948.015518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.044 3.956 4 C 0.124 3.876 5 N -0.591 5.591 6 C 0.205 3.795 7 C -0.533 4.533 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.889 5.889 11 Si 0.865 3.135 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.531 3.469 16 O -0.554 6.554 17 C -0.098 4.098 18 H 0.094 0.906 19 C -0.100 4.100 20 C -0.077 4.077 21 C -0.082 4.082 22 C -0.125 4.125 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.112 4.112 26 C -0.054 4.054 27 C -0.073 4.073 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.074 0.926 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.408 -6.163 2.508 8.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.288 6.288 3 C -0.034 4.034 4 C 0.000 4.000 5 N -0.322 5.322 6 C 0.084 3.916 7 C -0.571 4.571 8 H 0.101 0.899 9 C -0.125 4.125 10 N -0.527 5.527 11 Si 0.692 3.308 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.319 3.681 16 O -0.433 6.433 17 C -0.119 4.119 18 H 0.112 0.888 19 C -0.138 4.138 20 C -0.114 4.114 21 C -0.082 4.082 22 C -0.143 4.143 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.054 4.054 27 C -0.110 4.110 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.092 0.908 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.319 -6.596 2.843 8.938 hybrid contribution 0.312 1.065 -0.765 1.348 sum 5.631 -5.531 2.078 8.162 Atomic orbital electron populations 1.22630 0.82455 1.01863 0.99295 1.88036 1.18299 1.27233 1.95214 1.23012 0.94696 0.85401 1.00293 1.21301 0.92463 0.98137 0.88057 1.47817 1.65567 1.07448 1.11353 1.19867 0.97789 0.90607 0.83347 1.21385 0.99908 1.31268 1.04554 0.89871 1.24846 0.95554 0.95933 0.96173 1.69881 1.27247 1.41917 1.13614 0.87025 0.83713 0.80622 0.79488 1.19861 1.21057 1.18986 1.20238 0.77230 0.81804 0.88820 1.90601 1.53149 1.61331 1.38200 1.21205 0.97741 0.97808 0.95141 0.88777 1.21404 0.98064 0.98080 0.96291 1.20466 0.96452 1.01311 0.93215 1.19625 0.94395 0.98159 0.96036 1.21047 0.99326 0.99734 0.94174 1.20943 0.94335 1.01216 0.98557 1.21013 0.96199 0.98759 0.98325 1.21243 1.00088 0.98237 0.93482 1.19721 0.93039 0.96705 0.95983 1.20485 0.97070 0.99725 0.93761 0.95207 0.94053 0.90493 0.94254 0.91209 0.90121 0.90113 0.95268 0.95046 0.92487 0.91669 0.90929 0.90956 0.90820 0.86727 0.86723 0.86508 0.85854 0.90789 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.68 16 2 O -0.37 -7.41 9.97 -35.30 -0.35 -7.76 16 3 C 0.04 0.79 6.28 37.16 0.23 1.02 16 4 C 0.12 2.21 5.87 -4.04 -0.02 2.18 16 5 N -0.59 -11.92 2.43 -175.06 -0.42 -12.35 16 6 C 0.21 4.38 4.07 -5.20 -0.02 4.36 16 7 C -0.53 -13.24 7.70 -34.44 -0.27 -13.50 16 8 H 0.08 2.34 7.82 -52.49 -0.41 1.92 16 9 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -24.84 13.96 55.43 0.77 -24.07 16 11 Si 0.86 19.47 27.46 -169.99 -4.67 14.80 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.27 -5.63 6.55 56.52 0.37 -5.26 16 15 C 0.53 10.96 6.38 -10.98 -0.07 10.89 16 16 O -0.55 -12.58 15.55 5.48 0.09 -12.50 16 17 C -0.10 -1.81 2.03 -91.74 -0.19 -2.00 16 18 H 0.09 1.78 5.74 -51.93 -0.30 1.48 16 19 C -0.10 -1.59 4.81 -26.70 -0.13 -1.72 16 20 C -0.08 -1.07 5.67 -28.06 -0.16 -1.23 16 21 C -0.08 -1.29 5.74 -104.62 -0.60 -1.89 16 22 C -0.12 -1.74 9.61 -39.44 -0.38 -2.12 16 23 C -0.13 -1.80 10.05 -39.68 -0.40 -2.20 16 24 C -0.12 -1.83 10.05 -39.68 -0.40 -2.23 16 25 C -0.11 -1.90 9.61 -39.45 -0.38 -2.28 16 26 C -0.05 -0.96 5.74 -104.61 -0.60 -1.56 16 27 C -0.07 -1.41 4.97 -28.06 -0.14 -1.55 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.40 7.40 -51.93 -0.38 1.02 16 33 H 0.08 1.45 7.33 -51.93 -0.38 1.07 16 34 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 35 H 0.03 0.62 5.30 -51.93 -0.28 0.34 16 36 H 0.03 0.66 6.96 -51.93 -0.36 0.30 16 37 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 39 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.11 1.31 8.05 -52.49 -0.42 0.88 16 43 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 45 H 0.12 2.07 8.05 -52.49 -0.42 1.65 16 46 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 47 H 0.11 2.49 6.30 -51.93 -0.33 2.16 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -29.94 373.67 -8.96 -38.90 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.51 Total: 7.54 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.50 Total: -10.20 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.35 Total: -36.41 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.27 Total: -20.26 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.94 -8.96 -38.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223457633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.795 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds