Wall clock time and date at job start Tue Mar 31 2020 12:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00167 * 2 1 4 4 C 1.52997 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46801 * 65.00460 * 4 3 2 6 6 C 1.46494 * 120.00150 * 84.64816 * 5 4 3 7 7 C 1.50703 * 109.46914 * 264.86206 * 6 5 4 8 8 H 1.07993 * 120.00341 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99694 * 180.27872 * 7 6 5 10 10 N 1.31518 * 119.99559 * 179.72348 * 9 7 6 11 11 Si 1.86792 * 120.00353 * 359.72267 * 9 7 6 12 12 H 1.48496 * 109.47206 * 90.00245 * 11 9 7 13 13 H 1.48502 * 109.47427 * 210.00426 * 11 9 7 14 14 H 1.48507 * 109.47328 * 330.00438 * 11 9 7 15 15 C 1.34775 * 119.99639 * 264.63858 * 5 4 3 16 16 O 1.21282 * 120.00179 * 4.21274 * 15 5 4 17 17 C 1.50706 * 120.00167 * 184.20357 * 15 5 4 18 18 H 1.09003 * 109.67153 * 24.46385 * 17 15 5 19 19 C 1.53323 * 109.67789 * 145.00951 * 17 15 5 20 20 C 1.52732 * 108.38689 * 189.58498 * 19 17 15 21 21 C 1.50624 * 110.59134 * 308.89813 * 20 19 17 22 22 C 1.38914 * 117.75044 * 197.41932 * 21 20 19 23 23 C 1.37932 * 120.54196 * 180.56568 * 22 21 20 24 24 C 1.38267 * 119.77602 * 0.02562 * 23 22 21 25 25 C 1.37933 * 119.76707 * 359.88669 * 24 23 22 26 26 C 1.37668 * 122.56588 * 17.79289 * 21 20 19 27 27 C 1.50635 * 122.55823 * 359.25513 * 26 21 20 28 28 H 1.08997 * 109.47214 * 299.99988 * 1 2 3 29 29 H 1.09003 * 109.46470 * 60.00195 * 1 2 3 30 30 H 1.08998 * 109.46732 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47041 * 59.99592 * 3 2 1 32 32 H 1.09000 * 109.47000 * 300.00031 * 3 2 1 33 33 H 1.08994 * 109.47309 * 304.99877 * 4 3 2 34 34 H 1.09000 * 109.46830 * 185.00003 * 4 3 2 35 35 H 1.09007 * 109.47197 * 144.86270 * 6 5 4 36 36 H 1.08998 * 109.47624 * 24.86143 * 6 5 4 37 37 H 0.96995 * 119.99558 * 179.97438 * 10 9 7 38 38 H 1.08994 * 109.68446 * 309.31511 * 19 17 15 39 39 H 1.08998 * 109.68245 * 69.87452 * 19 17 15 40 40 H 1.08997 * 109.24910 * 188.61008 * 20 19 17 41 41 H 1.09002 * 109.21830 * 69.16996 * 20 19 17 42 42 H 1.07990 * 119.72814 * 0.62038 * 22 21 20 43 43 H 1.08001 * 120.11467 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.11398 * 179.86400 * 24 23 22 45 45 H 1.08001 * 119.72402 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.24816 * 257.49799 * 27 26 21 47 47 H 1.09000 * 109.25066 * 138.07684 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1753 1.3871 -2.4464 7 6 2.9285 1.3536 -3.2922 8 1 2.0738 0.7766 -2.9716 9 6 2.8812 2.0546 -4.4786 10 7 1.7951 2.0209 -5.2194 11 14 4.3598 3.0520 -5.0337 12 1 5.2501 2.1988 -5.8610 13 1 3.9002 4.2132 -5.8373 14 1 5.1046 3.5371 -3.8440 15 6 4.1999 -0.7641 -1.3024 16 8 3.9627 -1.4568 -0.3355 17 6 4.7440 -1.3885 -2.5614 18 1 5.2889 -0.6398 -3.1365 19 6 5.6820 -2.5463 -2.1999 20 6 6.3988 -3.0002 -3.4698 21 6 5.4076 -3.2568 -4.5746 22 6 5.8301 -4.0148 -5.6594 23 6 4.9734 -4.2752 -6.7086 24 6 3.6837 -3.7776 -6.6818 25 6 3.2618 -3.0263 -5.6047 26 6 4.1220 -2.7654 -4.5456 27 6 3.5938 -1.9437 -3.3989 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5686 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.0150 0.9962 -3.0213 36 1 4.3853 2.4146 -2.1495 37 1 1.7617 2.5143 -6.0538 38 1 6.4138 -2.2102 -1.4654 39 1 5.1028 -3.3736 -1.7898 40 1 6.9513 -3.9166 -3.2626 41 1 7.0959 -2.2239 -3.7854 42 1 6.8371 -4.4041 -5.6809 43 1 5.3090 -4.8656 -7.5484 44 1 3.0091 -3.9763 -7.5014 45 1 2.2541 -2.6384 -5.5842 46 1 2.9607 -2.5695 -2.7700 47 1 3.0032 -1.1162 -3.7919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223457633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:10 Heat of formation + Delta-G solvation = -82.191079 kcal Electronic energy + Delta-G solvation = -28063.841531 eV Core-core repulsion = 24403.357739 eV Total energy + Delta-G solvation = -3660.483793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47903 -40.24673 -38.65102 -36.76152 -36.55844 -34.49987 -33.47249 -31.87384 -30.90122 -29.74280 -29.31091 -27.23272 -25.36315 -24.45999 -24.19305 -23.09532 -22.96890 -20.70230 -19.51289 -18.98915 -18.18373 -17.56172 -17.28477 -16.92050 -16.62661 -16.39979 -16.12730 -15.93841 -15.54271 -15.18489 -15.06365 -14.69136 -14.62847 -14.30494 -14.09409 -13.82494 -13.65954 -13.56196 -13.46727 -13.25446 -12.95274 -12.83511 -12.58853 -12.43643 -12.33399 -12.24232 -12.05394 -11.92853 -11.82250 -11.62240 -11.54963 -11.27359 -10.73458 -10.58471 -10.34879 -9.60404 -9.40684 -9.34922 -8.23166 -6.26631 0.51428 0.51846 1.39831 1.41357 1.49113 1.82083 2.35111 2.37528 2.89478 2.99588 3.10693 3.61850 3.76049 3.89135 4.08152 4.14105 4.17493 4.23598 4.29369 4.29683 4.32927 4.45082 4.47540 4.49779 4.52108 4.58322 4.62055 4.71885 4.73294 4.75650 4.78857 4.88823 4.99313 5.00185 5.05611 5.07176 5.13451 5.19110 5.34176 5.39942 5.50456 5.63920 5.67047 5.77766 5.85033 6.19857 6.29113 6.35051 6.67718 6.80106 7.33234 7.47828 8.92379 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010073 B = 0.005858 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.133341 B = 4778.656578 C = 5948.015518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.403 6.403 3 C 0.045 3.955 4 C 0.117 3.883 5 N -0.594 5.594 6 C 0.212 3.788 7 C -0.517 4.517 8 H 0.034 0.966 9 C 0.023 3.977 10 N -0.940 5.940 11 Si 0.928 3.072 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.235 1.235 15 C 0.525 3.475 16 O -0.578 6.578 17 C -0.095 4.095 18 H 0.093 0.907 19 C -0.094 4.094 20 C -0.072 4.072 21 C -0.090 4.090 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.139 4.139 26 C -0.084 4.084 27 C -0.058 4.058 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.264 0.736 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.137 0.863 45 H 0.102 0.898 46 H 0.051 0.949 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.020 -6.511 2.391 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.322 6.322 3 C -0.032 4.032 4 C -0.006 4.006 5 N -0.324 5.324 6 C 0.090 3.910 7 C -0.556 4.556 8 H 0.052 0.948 9 C -0.176 4.176 10 N -0.580 5.580 11 Si 0.751 3.249 12 H -0.195 1.195 13 H -0.216 1.216 14 H -0.158 1.158 15 C 0.314 3.686 16 O -0.459 6.459 17 C -0.116 4.116 18 H 0.111 0.889 19 C -0.132 4.132 20 C -0.109 4.109 21 C -0.090 4.090 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.158 4.158 26 C -0.084 4.084 27 C -0.095 4.095 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.154 0.846 45 H 0.120 0.880 46 H 0.070 0.930 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.936 -6.937 2.756 11.643 hybrid contribution -0.951 1.091 -0.709 1.612 sum 7.985 -5.845 2.047 10.105 Atomic orbital electron populations 1.22745 0.80942 1.02714 0.99930 1.87990 1.20199 1.28642 1.95388 1.23044 0.94977 0.84718 1.00475 1.21596 0.92368 0.99710 0.86897 1.47891 1.65283 1.07423 1.11820 1.19741 0.96057 0.91771 0.83437 1.21389 0.99778 1.29526 1.04876 0.94774 1.25649 0.98378 0.97328 0.96242 1.70048 1.29937 1.43711 1.14323 0.86007 0.80185 0.78720 0.79940 1.19495 1.21562 1.15766 1.20660 0.76858 0.81927 0.89161 1.90574 1.54315 1.61756 1.39219 1.21217 0.97740 0.98770 0.93874 0.88939 1.21369 0.97571 0.96289 0.97930 1.20521 0.95958 1.03232 0.91171 1.19909 0.93569 0.98009 0.97480 1.21461 1.00953 0.98400 0.93073 1.21400 0.93320 1.00187 0.99411 1.21287 0.97568 0.98023 0.97860 1.21276 0.99550 0.99950 0.94984 1.19665 0.94728 0.98377 0.95678 1.20166 0.96830 0.98188 0.94358 0.92117 0.95692 0.89684 0.90694 0.94178 0.90070 0.86756 0.94099 0.93155 0.92717 0.90357 0.92297 0.87767 0.89274 0.83064 0.83093 0.84554 0.87956 0.93046 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 11.01 113.37 1.25 2.37 16 2 O -0.40 -16.74 9.97 -148.91 -1.48 -18.22 16 3 C 0.05 1.65 6.28 71.98 0.45 2.10 16 4 C 0.12 4.07 5.87 86.38 0.51 4.58 16 5 N -0.59 -24.08 2.43 -826.16 -2.01 -26.08 16 6 C 0.21 8.95 4.07 85.64 0.35 9.30 16 7 C -0.52 -26.80 7.70 25.60 0.20 -26.60 16 8 H 0.03 2.08 7.82 -2.91 -0.02 2.06 16 9 C 0.02 1.21 5.47 84.66 0.46 1.67 16 10 N -0.94 -55.30 13.96 21.45 0.30 -55.00 16 11 Si 0.93 39.81 27.46 68.60 1.88 41.70 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 13 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.23 -8.86 6.55 99.48 0.65 -8.21 16 15 C 0.52 22.14 6.38 87.66 0.56 22.69 16 16 O -0.58 -26.85 15.55 -2.97 -0.05 -26.90 16 17 C -0.09 -3.58 2.03 -11.52 -0.02 -3.61 16 18 H 0.09 3.48 5.74 -2.39 -0.01 3.47 16 19 C -0.09 -2.86 4.81 30.61 0.15 -2.71 16 20 C -0.07 -1.78 5.67 29.73 0.17 -1.61 16 21 C -0.09 -2.65 5.74 -19.86 -0.11 -2.77 16 22 C -0.12 -2.93 9.61 22.36 0.21 -2.71 16 23 C -0.13 -2.99 10.05 22.20 0.22 -2.77 16 24 C -0.13 -3.69 10.05 22.20 0.22 -3.47 16 25 C -0.14 -4.96 9.61 22.36 0.21 -4.75 16 26 C -0.08 -3.07 5.74 -19.86 -0.11 -3.19 16 27 C -0.06 -2.40 4.97 29.74 0.15 -2.25 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.04 1.68 7.40 -2.39 -0.02 1.66 16 33 H 0.08 2.84 7.33 -2.39 -0.02 2.82 16 34 H 0.11 3.16 7.95 -2.39 -0.02 3.14 16 35 H 0.04 1.67 5.30 -2.38 -0.01 1.66 16 36 H 0.05 1.98 6.96 -2.39 -0.02 1.96 16 37 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.08 2.18 8.12 -2.39 -0.02 2.16 16 39 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 40 H 0.10 1.95 8.13 -2.39 -0.02 1.93 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.15 2.56 8.05 -2.92 -0.02 2.54 16 43 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 45 H 0.10 3.89 8.05 -2.91 -0.02 3.87 16 46 H 0.05 2.26 8.11 -2.39 -0.02 2.24 16 47 H 0.07 3.38 6.30 -2.39 -0.02 3.37 16 Total: -1.00 -69.78 373.67 4.40 -65.38 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.89 Total: 32.86 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.86 Total: -13.73 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.71 Total: -81.08 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.53 Total: -45.12 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.88 Total: 41.70 kcal Total: -69.78 4.40 -65.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223457633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.812 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds