Wall clock time and date at job start Tue Mar 31 2020 12:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99856 * 2 1 4 4 C 1.38756 * 120.05416 * 359.72175 * 3 2 1 5 5 C 1.38123 * 119.94036 * 179.70131 * 4 3 2 6 6 C 1.38286 * 120.05614 * 0.59903 * 5 4 3 7 7 C 1.38240 * 120.10984 * 359.67488 * 6 5 4 8 8 C 1.50701 * 119.96719 * 180.02562 * 7 6 5 9 9 C 1.53007 * 109.47221 * 270.02138 * 8 7 6 10 10 C 1.50697 * 109.47125 * 180.02562 * 9 8 7 11 11 O 1.21302 * 120.00133 * 353.75033 * 10 9 8 12 12 N 1.34772 * 119.99938 * 173.74884 * 10 9 8 13 13 C 1.37098 * 119.99944 * 5.46266 * 12 10 9 14 14 H 1.07999 * 119.99706 * 227.20944 * 13 12 10 15 15 C 1.38948 * 119.99961 * 47.20910 * 13 12 10 16 16 N 1.31411 * 119.99575 * 203.26336 * 15 13 12 17 17 Si 1.86801 * 120.00157 * 23.26918 * 15 13 12 18 18 H 1.48499 * 109.47000 * 89.48617 * 17 15 13 19 19 H 1.48501 * 109.47044 * 209.48696 * 17 15 13 20 20 H 1.48496 * 109.46719 * 329.48466 * 17 15 13 21 21 C 1.46507 * 119.99808 * 185.46045 * 12 10 9 22 22 C 1.54271 * 110.03122 * 240.40022 * 21 12 10 23 23 C 1.54962 * 104.15934 * 217.13819 * 22 21 12 24 24 C 1.54886 * 102.77865 * 37.88860 * 23 22 21 25 25 C 1.53876 * 110.02742 * 123.18752 * 21 12 10 26 26 C 1.38167 * 120.06029 * 0.02662 * 7 6 5 27 27 H 1.09004 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47818 * 300.00083 * 1 2 3 29 29 H 1.09001 * 109.47343 * 60.00906 * 1 2 3 30 30 H 1.08010 * 120.02601 * 359.97436 * 4 3 2 31 31 H 1.08004 * 119.96524 * 180.29891 * 5 4 3 32 32 H 1.07996 * 119.94015 * 179.70230 * 6 5 4 33 33 H 1.08995 * 109.47715 * 30.02578 * 8 7 6 34 34 H 1.09007 * 109.46807 * 150.02591 * 8 7 6 35 35 H 1.09004 * 109.46943 * 300.00209 * 9 8 7 36 36 H 1.09000 * 109.46761 * 60.00076 * 9 8 7 37 37 H 0.97000 * 119.99605 * 179.97438 * 16 15 13 38 38 H 1.08998 * 110.01712 * 1.79410 * 21 12 10 39 39 H 1.09002 * 110.48751 * 335.78528 * 22 21 12 40 40 H 1.08996 * 110.48260 * 98.42662 * 22 21 12 41 41 H 1.09000 * 110.72131 * 279.57243 * 23 22 21 42 42 H 1.08999 * 110.92079 * 156.29636 * 23 22 21 43 43 H 1.08992 * 110.48982 * 203.40467 * 24 23 22 44 44 H 1.09001 * 110.59623 * 80.81576 * 24 23 22 45 45 H 1.09003 * 110.02482 * 238.56537 * 25 21 12 46 46 H 1.08995 * 110.03989 * 359.97438 * 25 21 12 47 47 H 1.07993 * 120.02973 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0058 5 6 1.9207 3.6048 0.0004 6 6 3.3018 3.6759 0.0000 7 6 4.0558 2.5172 0.0000 8 6 5.5606 2.5984 0.0001 9 6 6.0700 2.6264 -1.4424 10 6 7.5748 2.7070 -1.4423 11 8 8.1743 2.8531 -0.3979 12 7 8.2545 2.6166 -2.6025 13 6 7.5756 2.5642 -3.7924 14 1 7.8399 1.8236 -4.5327 15 6 6.5475 3.4639 -4.0459 16 7 5.6149 3.1659 -4.9224 17 14 6.4913 5.0971 -3.1410 18 1 7.2518 6.1152 -3.9093 19 1 5.0797 5.5363 -2.9995 20 1 7.0974 4.9381 -1.7947 21 6 9.7190 2.5745 -2.5921 22 6 10.2877 3.7732 -3.3793 23 6 11.5319 3.1968 -4.1010 24 6 11.0675 1.7745 -4.5014 25 6 10.2147 1.3041 -3.3050 26 6 3.4310 1.2849 0.0000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 0.2126 2.3203 -0.0108 31 1 1.3337 4.5114 0.0008 32 1 3.7920 4.6382 0.0000 33 1 5.8755 3.5064 0.5143 34 1 5.9713 1.7290 0.5137 35 1 5.7551 1.7183 -1.9565 36 1 5.6592 3.4957 -1.9559 37 1 4.8970 3.7938 -5.0991 38 1 10.0855 2.5940 -1.5658 39 1 9.5586 4.1334 -4.1052 40 1 10.5772 4.5737 -2.6986 41 1 12.3835 3.1484 -3.4223 42 1 11.7772 3.7861 -4.9846 43 1 11.9261 1.1175 -4.6395 44 1 10.4649 1.8091 -5.4090 45 1 10.8226 0.7076 -2.6247 46 1 9.3659 0.7187 -3.6582 47 1 4.0206 0.3801 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265704724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:25 Heat of formation + Delta-G solvation = -50.483648 kcal Electronic energy + Delta-G solvation = -27148.913000 eV Core-core repulsion = 23489.804144 eV Total energy + Delta-G solvation = -3659.108855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.04064 -39.30298 -37.63777 -36.82707 -34.15307 -33.26558 -31.77839 -30.49026 -29.21270 -28.08451 -27.38699 -27.06642 -24.67835 -23.88288 -22.35864 -20.82769 -20.10915 -19.52415 -19.24108 -17.64403 -16.89197 -16.19151 -15.90744 -15.79608 -15.70758 -15.59572 -14.77408 -14.52164 -13.94914 -13.86486 -13.75437 -13.47009 -13.13243 -12.90782 -12.67525 -12.61074 -12.34121 -11.99504 -11.90274 -11.62256 -11.38488 -11.09705 -10.98500 -10.92145 -10.78205 -10.64150 -10.57374 -10.56714 -10.48104 -10.21692 -10.07808 -9.85012 -9.70016 -9.02622 -8.68590 -8.45167 -8.02901 -7.57466 -6.50457 -4.15197 1.50782 1.63455 3.07700 3.20545 3.30622 3.31317 3.80585 3.92514 4.11696 4.47204 4.86343 4.87789 4.98918 5.06342 5.09535 5.23758 5.27926 5.28772 5.37559 5.48661 5.52493 5.56661 5.70515 5.85272 5.92504 5.99646 6.06993 6.15633 6.16448 6.21350 6.24360 6.31596 6.38894 6.42407 6.45021 6.46755 6.54215 6.59811 6.60971 6.81872 6.83995 6.91545 6.95821 6.99052 7.06702 7.50628 7.67838 7.80653 8.50759 8.98102 9.33703 9.76991 10.59081 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.003663 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.072886 B = 7642.446968 C = 7926.065119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.218 4.218 5 C -0.080 4.080 6 C -0.154 4.154 7 C -0.030 4.030 8 C -0.069 4.069 9 C -0.113 4.113 10 C 0.492 3.508 11 O -0.600 6.600 12 N -0.465 5.465 13 C -0.342 4.342 14 H 0.100 0.900 15 C 0.078 3.922 16 N -0.850 5.850 17 Si 0.848 3.152 18 H -0.280 1.280 19 H -0.278 1.278 20 H -0.253 1.253 21 C 0.130 3.870 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.144 4.144 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.275 0.725 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.076 0.924 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 -1.889 5.726 7.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.236 4.236 5 C -0.098 4.098 6 C -0.172 4.172 7 C -0.030 4.030 8 C -0.107 4.107 9 C -0.153 4.153 10 C 0.282 3.718 11 O -0.485 6.485 12 N -0.186 5.186 13 C -0.469 4.469 14 H 0.118 0.882 15 C -0.130 4.130 16 N -0.485 5.485 17 Si 0.673 3.327 18 H -0.207 1.207 19 H -0.204 1.204 20 H -0.177 1.177 21 C 0.026 3.974 22 C -0.170 4.170 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.165 4.165 26 C -0.163 4.163 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.944 -1.993 6.108 8.107 hybrid contribution -0.586 1.251 0.008 1.381 sum -5.531 -0.742 6.116 8.279 Atomic orbital electron populations 1.23001 0.78852 1.03598 1.01174 1.86068 1.21018 1.27171 1.88940 1.18979 0.92279 0.83945 0.96757 1.21118 0.99583 0.92477 1.10472 1.20858 0.94489 0.96829 0.97654 1.21006 0.93726 0.98282 1.04213 1.19836 0.96215 0.92049 0.94895 1.20468 0.88821 1.03931 0.97499 1.21547 0.93586 1.04569 0.95556 1.20415 0.89669 0.78373 0.83330 1.90513 1.70947 1.54876 1.32173 1.43825 1.03562 1.65662 1.05517 1.18797 1.15236 1.17280 0.95550 0.88225 1.25538 0.94993 0.97293 0.95184 1.69760 1.10053 1.35428 1.33229 0.87356 0.78107 0.85295 0.81902 1.20693 1.20412 1.17747 1.21643 0.82899 0.93744 0.99089 1.22691 0.97147 0.97563 0.99554 1.22413 0.97411 0.96522 0.99440 1.22265 0.98531 0.95871 0.98816 1.22387 0.99535 0.97860 0.96699 1.20322 0.91125 0.98409 1.06432 0.88496 0.92934 0.92732 0.85893 0.86064 0.86131 0.90499 0.90291 0.88368 0.90805 0.91436 0.89936 0.89826 0.92824 0.92305 0.92196 0.92774 0.91377 0.92777 0.90489 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.49 10.50 -19.45 -0.20 -4.69 16 3 C 0.13 1.93 6.69 -39.22 -0.26 1.67 16 4 C -0.22 -3.01 9.04 -39.43 -0.36 -3.36 16 5 C -0.08 -1.14 10.04 -39.61 -0.40 -1.54 16 6 C -0.15 -2.51 9.70 -39.56 -0.38 -2.89 16 7 C -0.03 -0.52 5.13 -104.65 -0.54 -1.06 16 8 C -0.07 -1.32 4.66 -27.88 -0.13 -1.45 16 9 C -0.11 -2.50 3.67 -27.88 -0.10 -2.60 16 10 C 0.49 11.88 5.20 -10.99 -0.06 11.82 16 11 O -0.60 -15.33 15.35 5.54 0.09 -15.24 16 12 N -0.47 -10.98 1.99 -106.54 -0.21 -11.19 16 13 C -0.34 -8.57 7.52 -14.93 -0.11 -8.69 16 14 H 0.10 2.65 7.20 -52.49 -0.38 2.27 16 15 C 0.08 2.01 4.21 -17.47 -0.07 1.93 16 16 N -0.85 -22.80 13.96 55.50 0.77 -22.03 16 17 Si 0.85 20.33 24.59 -169.99 -4.18 16.15 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.25 -6.26 5.46 56.52 0.31 -5.95 16 21 C 0.13 2.71 3.29 -66.81 -0.22 2.49 16 22 C -0.13 -2.51 6.42 -25.03 -0.16 -2.67 16 23 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 24 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 25 C -0.13 -2.28 6.21 -25.61 -0.16 -2.44 16 26 C -0.14 -2.40 9.64 -39.43 -0.38 -2.78 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 29 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 30 H 0.12 1.34 6.30 -52.48 -0.33 1.01 16 31 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 32 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.08 1.47 7.97 -51.93 -0.41 1.06 16 34 H 0.08 1.44 8.08 -51.93 -0.42 1.02 16 35 H 0.10 2.22 8.01 -51.93 -0.42 1.80 16 36 H 0.07 1.72 3.15 -51.93 -0.16 1.55 16 37 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.08 1.78 6.96 -51.93 -0.36 1.42 16 39 H 0.08 1.79 7.14 -51.93 -0.37 1.42 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 1.52 6.78 -51.93 -0.35 1.17 16 47 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -29.23 367.41 -8.34 -37.57 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.46 Total: 8.26 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -2.68 Total: -14.37 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.56 Total: -33.22 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.12 Total: -19.94 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.18 Total: 16.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.23 -8.34 -37.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265704724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.912 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds