Wall clock time and date at job start Tue Mar 31 2020 12:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99856 * 2 1 4 4 C 1.38756 * 120.05416 * 359.72175 * 3 2 1 5 5 C 1.38123 * 119.94036 * 179.70131 * 4 3 2 6 6 C 1.38286 * 120.05614 * 0.59903 * 5 4 3 7 7 C 1.38240 * 120.10984 * 359.67488 * 6 5 4 8 8 C 1.50701 * 119.96719 * 180.02562 * 7 6 5 9 9 C 1.53007 * 109.47221 * 270.02138 * 8 7 6 10 10 C 1.50697 * 109.47125 * 180.02562 * 9 8 7 11 11 O 1.21302 * 120.00133 * 353.75033 * 10 9 8 12 12 N 1.34772 * 119.99938 * 173.74884 * 10 9 8 13 13 C 1.37098 * 119.99944 * 5.46266 * 12 10 9 14 14 H 1.07999 * 119.99706 * 227.20944 * 13 12 10 15 15 C 1.38948 * 119.99961 * 47.20910 * 13 12 10 16 16 N 1.31411 * 119.99575 * 203.26336 * 15 13 12 17 17 Si 1.86801 * 120.00157 * 23.26918 * 15 13 12 18 18 H 1.48499 * 109.47000 * 89.48617 * 17 15 13 19 19 H 1.48501 * 109.47044 * 209.48696 * 17 15 13 20 20 H 1.48496 * 109.46719 * 329.48466 * 17 15 13 21 21 C 1.46507 * 119.99808 * 185.46045 * 12 10 9 22 22 C 1.54271 * 110.03122 * 240.40022 * 21 12 10 23 23 C 1.54962 * 104.15934 * 217.13819 * 22 21 12 24 24 C 1.54886 * 102.77865 * 37.88860 * 23 22 21 25 25 C 1.53876 * 110.02742 * 123.18752 * 21 12 10 26 26 C 1.38167 * 120.06029 * 0.02662 * 7 6 5 27 27 H 1.09004 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47818 * 300.00083 * 1 2 3 29 29 H 1.09001 * 109.47343 * 60.00906 * 1 2 3 30 30 H 1.08010 * 120.02601 * 359.97436 * 4 3 2 31 31 H 1.08004 * 119.96524 * 180.29891 * 5 4 3 32 32 H 1.07996 * 119.94015 * 179.70230 * 6 5 4 33 33 H 1.08995 * 109.47715 * 30.02578 * 8 7 6 34 34 H 1.09007 * 109.46807 * 150.02591 * 8 7 6 35 35 H 1.09004 * 109.46943 * 300.00209 * 9 8 7 36 36 H 1.09000 * 109.46761 * 60.00076 * 9 8 7 37 37 H 0.97000 * 119.99605 * 179.97438 * 16 15 13 38 38 H 1.08998 * 110.01712 * 1.79410 * 21 12 10 39 39 H 1.09002 * 110.48751 * 335.78528 * 22 21 12 40 40 H 1.08996 * 110.48260 * 98.42662 * 22 21 12 41 41 H 1.09000 * 110.72131 * 279.57243 * 23 22 21 42 42 H 1.08999 * 110.92079 * 156.29636 * 23 22 21 43 43 H 1.08992 * 110.48982 * 203.40467 * 24 23 22 44 44 H 1.09001 * 110.59623 * 80.81576 * 24 23 22 45 45 H 1.09003 * 110.02482 * 238.56537 * 25 21 12 46 46 H 1.08995 * 110.03989 * 359.97438 * 25 21 12 47 47 H 1.07993 * 120.02973 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0058 5 6 1.9207 3.6048 0.0004 6 6 3.3018 3.6759 0.0000 7 6 4.0558 2.5172 0.0000 8 6 5.5606 2.5984 0.0001 9 6 6.0700 2.6264 -1.4424 10 6 7.5748 2.7070 -1.4423 11 8 8.1743 2.8531 -0.3979 12 7 8.2545 2.6166 -2.6025 13 6 7.5756 2.5642 -3.7924 14 1 7.8399 1.8236 -4.5327 15 6 6.5475 3.4639 -4.0459 16 7 5.6149 3.1659 -4.9224 17 14 6.4913 5.0971 -3.1410 18 1 7.2518 6.1152 -3.9093 19 1 5.0797 5.5363 -2.9995 20 1 7.0974 4.9381 -1.7947 21 6 9.7190 2.5745 -2.5921 22 6 10.2877 3.7732 -3.3793 23 6 11.5319 3.1968 -4.1010 24 6 11.0675 1.7745 -4.5014 25 6 10.2147 1.3041 -3.3050 26 6 3.4310 1.2849 0.0000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 0.2126 2.3203 -0.0108 31 1 1.3337 4.5114 0.0008 32 1 3.7920 4.6382 0.0000 33 1 5.8755 3.5064 0.5143 34 1 5.9713 1.7290 0.5137 35 1 5.7551 1.7183 -1.9565 36 1 5.6592 3.4957 -1.9559 37 1 4.8970 3.7938 -5.0991 38 1 10.0855 2.5940 -1.5658 39 1 9.5586 4.1334 -4.1052 40 1 10.5772 4.5737 -2.6986 41 1 12.3835 3.1484 -3.4223 42 1 11.7772 3.7861 -4.9846 43 1 11.9261 1.1175 -4.6395 44 1 10.4649 1.8091 -5.4090 45 1 10.8226 0.7076 -2.6247 46 1 9.3659 0.7187 -3.6582 47 1 4.0206 0.3801 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265704724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:24 Heat of formation + Delta-G solvation = -65.459022 kcal Electronic energy + Delta-G solvation = -27149.562381 eV Core-core repulsion = 23489.804144 eV Total energy + Delta-G solvation = -3659.758236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32749 -40.95001 -38.89021 -38.33433 -36.05189 -34.70484 -33.72328 -31.66134 -30.61390 -29.53065 -28.76681 -28.08854 -26.59293 -25.41689 -23.52812 -22.14114 -21.45447 -21.15426 -21.08544 -19.04163 -18.51615 -17.67887 -17.51481 -17.21782 -16.96609 -16.63428 -16.39546 -16.03522 -15.76767 -15.40125 -15.15067 -14.91069 -14.61405 -14.27689 -14.10383 -14.06854 -13.93565 -13.56802 -13.23471 -12.85781 -12.80738 -12.74449 -12.56870 -12.46261 -12.37067 -12.09343 -11.91169 -11.89602 -11.86538 -11.76809 -11.59710 -11.45381 -11.37444 -10.97978 -10.52313 -9.79644 -9.49785 -9.18672 -8.54918 -6.19347 0.30604 0.44723 1.12445 1.23849 1.33203 1.85872 2.12554 2.34766 2.59666 2.81184 2.90478 3.71765 3.81742 3.83497 3.86203 4.03186 4.11081 4.14550 4.21645 4.30764 4.32614 4.40740 4.42182 4.52572 4.56908 4.58861 4.64007 4.72724 4.73455 4.74916 4.75199 4.89577 4.93814 5.01781 5.03549 5.12651 5.14700 5.23338 5.29182 5.36550 5.42805 5.45447 5.56954 5.65218 5.69460 5.78203 5.90056 6.45528 6.47280 6.96080 7.37470 7.82142 8.58099 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.003663 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.072886 B = 7642.446968 C = 7926.065119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.120 3.880 4 C -0.211 4.211 5 C -0.077 4.077 6 C -0.173 4.173 7 C -0.047 4.047 8 C -0.059 4.059 9 C -0.106 4.106 10 C 0.481 3.519 11 O -0.617 6.617 12 N -0.469 5.469 13 C -0.332 4.332 14 H 0.081 0.919 15 C 0.056 3.944 16 N -0.879 5.879 17 Si 0.889 3.111 18 H -0.280 1.280 19 H -0.268 1.268 20 H -0.268 1.268 21 C 0.118 3.882 22 C -0.133 4.133 23 C -0.109 4.109 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.165 4.165 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.279 0.721 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -1.558 5.942 8.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.074 3.926 4 C -0.229 4.229 5 C -0.094 4.094 6 C -0.191 4.191 7 C -0.048 4.048 8 C -0.097 4.097 9 C -0.146 4.146 10 C 0.272 3.728 11 O -0.504 6.504 12 N -0.189 5.189 13 C -0.460 4.460 14 H 0.099 0.901 15 C -0.150 4.150 16 N -0.514 5.514 17 Si 0.715 3.285 18 H -0.207 1.207 19 H -0.193 1.193 20 H -0.193 1.193 21 C 0.015 3.985 22 C -0.171 4.171 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.161 4.161 26 C -0.183 4.183 27 H 0.137 0.863 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.581 -1.664 6.310 8.587 hybrid contribution -0.443 1.048 -0.035 1.139 sum -6.024 -0.616 6.276 8.721 Atomic orbital electron populations 1.23366 0.76298 1.05629 1.02366 1.86050 1.23679 1.26681 1.88687 1.19095 0.92000 0.85163 0.96294 1.21508 1.01269 0.91562 1.08595 1.21235 0.93732 0.98408 0.96061 1.21183 0.95022 0.97855 1.05060 1.19693 0.95053 0.93064 0.96948 1.20315 0.90503 1.03591 0.95246 1.21468 0.92315 1.03316 0.97488 1.20812 0.90563 0.78165 0.83254 1.90484 1.71498 1.55803 1.32628 1.43950 1.04963 1.65155 1.04854 1.18588 1.15309 1.16686 0.95411 0.90122 1.25816 0.94748 0.98823 0.95650 1.69802 1.10724 1.36283 1.34632 0.86719 0.78403 0.83120 0.80269 1.20693 1.19283 1.19262 1.21930 0.81143 0.96142 0.99314 1.22671 0.98304 0.97049 0.99067 1.22401 0.96173 0.95903 1.00153 1.22242 0.98968 0.96764 0.96910 1.22352 0.99389 0.96455 0.97903 1.20382 0.92352 0.98015 1.07593 0.86290 0.91235 0.91873 0.82485 0.82819 0.86022 0.91056 0.90307 0.89568 0.91795 0.91033 0.90896 0.92450 0.92510 0.89912 0.90472 0.89507 0.92739 0.90777 0.92837 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.04 10.50 -92.50 -0.97 -10.01 16 3 C 0.12 3.56 6.69 22.51 0.15 3.71 16 4 C -0.21 -5.28 9.04 22.37 0.20 -5.07 16 5 C -0.08 -2.00 10.04 22.25 0.22 -1.78 16 6 C -0.17 -5.54 9.70 22.28 0.22 -5.33 16 7 C -0.05 -1.68 5.13 -19.88 -0.10 -1.78 16 8 C -0.06 -2.32 4.66 29.85 0.14 -2.18 16 9 C -0.11 -4.87 3.67 29.85 0.11 -4.76 16 10 C 0.48 23.92 5.20 87.66 0.46 24.38 16 11 O -0.62 -32.31 15.35 -3.10 -0.05 -32.35 16 12 N -0.47 -22.72 1.99 -609.36 -1.21 -23.93 16 13 C -0.33 -17.18 7.52 84.04 0.63 -16.55 16 14 H 0.08 4.46 7.20 -2.91 -0.02 4.43 16 15 C 0.06 2.92 4.21 84.93 0.36 3.27 16 16 N -0.88 -47.81 13.96 21.66 0.30 -47.51 16 17 Si 0.89 42.56 24.59 68.60 1.69 44.24 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.27 -13.37 5.46 99.48 0.54 -12.83 16 21 C 0.12 4.93 3.29 45.72 0.15 5.08 16 22 C -0.13 -5.00 6.42 31.70 0.20 -4.80 16 23 C -0.11 -3.10 6.91 31.91 0.22 -2.88 16 24 C -0.11 -3.29 6.83 31.67 0.22 -3.08 16 25 C -0.12 -4.37 6.21 31.32 0.19 -4.17 16 26 C -0.16 -5.58 9.64 22.36 0.22 -5.37 16 27 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 29 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 30 H 0.16 2.78 6.30 -2.91 -0.02 2.76 16 31 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.07 2.83 7.97 -2.39 -0.02 2.81 16 34 H 0.08 3.02 8.08 -2.38 -0.02 3.00 16 35 H 0.09 4.09 8.01 -2.38 -0.02 4.07 16 36 H 0.06 3.04 3.15 -2.39 -0.01 3.04 16 37 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.07 3.17 6.96 -2.39 -0.02 3.15 16 39 H 0.06 2.46 7.14 -2.39 -0.02 2.45 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 2.15 6.78 -2.39 -0.02 2.13 16 47 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -64.27 367.41 5.24 -59.03 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.79 Total: 30.44 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 4.70 Total: -19.90 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -0.91 Total: -71.44 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.02 Total: -42.36 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.69 Total: 44.24 kcal Total: -64.27 5.24 -59.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265704724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.431 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds