Wall clock time and date at job start Tue Mar 31 2020 11:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 120.00128 * 2 1 4 4 C 1.52994 * 109.47039 * 89.99632 * 3 2 1 5 5 H 1.08993 * 109.47611 * 305.00255 * 4 3 2 6 6 C 1.53008 * 109.47259 * 65.00519 * 4 3 2 7 7 C 1.52994 * 109.47259 * 180.02562 * 6 4 3 8 8 C 1.53011 * 109.46947 * 299.99440 * 7 6 4 9 9 C 1.53005 * 109.46890 * 60.00519 * 8 7 6 10 10 C 1.53003 * 109.46573 * 299.99761 * 9 8 7 11 11 H 1.09008 * 109.46862 * 179.97438 * 10 9 8 12 12 O 1.42896 * 109.47548 * 299.99953 * 10 9 8 13 13 C 1.34777 * 120.00045 * 179.97438 * 2 1 3 14 14 O 1.21545 * 120.00024 * 184.38457 * 13 2 1 15 15 C 1.47887 * 119.99757 * 4.38593 * 13 2 1 16 16 C 1.39918 * 120.02528 * 22.24524 * 15 13 2 17 17 C 1.38328 * 120.35656 * 179.71383 * 16 15 13 18 18 C 1.37755 * 120.41367 * 0.56392 * 17 16 15 19 19 C 1.40754 * 120.03612 * 359.71022 * 18 17 16 20 20 C 1.41438 * 120.17521 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00220 * 28.87667 * 20 19 18 22 22 C 1.39943 * 119.99928 * 208.87408 * 20 19 18 23 23 N 1.30827 * 120.00076 * 10.23548 * 22 20 19 24 24 Si 1.86799 * 119.99755 * 190.23393 * 22 20 19 25 25 H 1.48494 * 109.47314 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46855 * 120.00138 * 24 22 20 27 27 H 1.48495 * 109.46843 * 239.99767 * 24 22 20 28 28 C 1.38996 * 120.02438 * 202.51413 * 15 13 2 29 29 H 1.09001 * 109.46641 * 84.52038 * 1 2 3 30 30 H 1.08996 * 109.47196 * 204.52553 * 1 2 3 31 31 H 1.09002 * 109.46781 * 324.52203 * 1 2 3 32 32 H 1.09003 * 109.46808 * 329.99611 * 3 2 1 33 33 H 1.09002 * 109.47152 * 210.00137 * 3 2 1 34 34 H 1.09003 * 109.46509 * 299.99525 * 6 4 3 35 35 H 1.08993 * 109.47025 * 59.99376 * 6 4 3 36 36 H 1.09000 * 109.47294 * 180.02562 * 7 6 4 37 37 H 1.08992 * 109.47578 * 59.99181 * 7 6 4 38 38 H 1.08992 * 109.46770 * 300.00236 * 8 7 6 39 39 H 1.09000 * 109.46902 * 180.02562 * 8 7 6 40 40 H 1.08990 * 109.47388 * 59.99521 * 9 8 7 41 41 H 1.08999 * 109.46955 * 180.02562 * 9 8 7 42 42 H 0.96700 * 113.99908 * 300.00896 * 12 10 9 43 43 H 1.08005 * 119.82183 * 359.97287 * 16 15 13 44 44 H 1.08005 * 119.79474 * 180.25379 * 17 16 15 45 45 H 1.08000 * 119.98285 * 179.74297 * 18 17 16 46 46 H 0.96992 * 119.99943 * 180.02562 * 23 22 20 47 47 H 1.07999 * 120.20040 * 0.02788 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7104 1.4424 5 1 1.5062 1.7550 1.9815 6 6 3.3824 0.7063 2.1266 7 6 3.6368 1.1476 3.5692 8 6 4.2901 2.5312 3.5716 9 6 3.3603 3.5354 2.8875 10 6 3.1059 3.0940 1.4448 11 1 2.4430 3.8091 0.9576 12 8 4.3467 3.0360 0.7385 13 6 2.1389 -1.1672 0.0005 14 8 3.3517 -1.1687 0.0810 15 6 1.4027 -2.4461 -0.0969 16 6 0.1149 -2.4727 -0.6433 17 6 -0.5776 -3.6660 -0.7431 18 6 -0.0125 -4.8398 -0.2953 19 6 1.2797 -4.8317 0.2626 20 6 1.8629 -6.0353 0.7228 21 1 1.5894 -6.9761 0.2686 22 6 2.7944 -6.0069 1.7668 23 7 2.9784 -4.9063 2.4497 24 14 3.7752 -7.5407 2.1852 25 1 3.3829 -8.6437 1.2716 26 1 5.2249 -7.2593 2.0285 27 1 3.4970 -7.9384 3.5886 28 6 1.9873 -3.6216 0.3596 29 1 -0.3632 0.0981 -1.0230 30 1 -0.3633 -0.9349 0.4266 31 1 -0.3633 0.8369 0.5965 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1384 -0.5139 34 1 2.9167 -0.2793 2.1253 35 1 4.3287 0.6617 1.5876 36 1 4.2996 0.4325 4.0565 37 1 2.6904 1.1919 4.1080 38 1 5.2366 2.4869 3.0329 39 1 4.4718 2.8454 4.5994 40 1 2.4138 3.5796 3.4262 41 1 3.8259 4.5210 2.8888 42 1 4.8171 3.8800 0.7000 43 1 -0.3392 -1.5573 -0.9930 44 1 -1.5695 -3.6768 -1.1703 45 1 -0.5611 -5.7669 -0.3728 46 1 3.6243 -4.8866 3.1730 47 1 2.9792 -3.6050 0.7865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272154978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:35 Heat of formation + Delta-G solvation = -63.168431 kcal Electronic energy + Delta-G solvation = -27535.092638 eV Core-core repulsion = 23875.433729 eV Total energy + Delta-G solvation = -3659.658909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.01438 -38.80276 -36.98985 -35.26919 -34.87079 -33.68634 -31.85817 -29.91840 -29.73486 -29.41109 -26.97787 -25.53188 -25.08748 -22.61955 -22.08640 -20.96283 -20.86494 -19.58650 -18.77806 -17.44344 -16.86563 -15.91877 -15.90034 -15.65346 -15.13023 -14.86224 -14.73259 -14.27540 -14.05701 -13.59283 -13.43913 -13.13588 -12.89862 -12.74773 -12.44440 -12.40398 -12.34326 -12.09715 -11.82887 -11.74351 -11.44110 -11.37535 -11.12548 -11.02364 -10.88816 -10.55009 -10.44387 -10.33197 -10.26097 -9.95644 -9.89103 -9.68995 -9.56625 -9.22752 -8.84620 -8.15043 -7.56857 -7.40569 -6.71480 -4.39922 2.28586 2.83516 3.10492 3.15198 3.15700 3.53268 3.88040 3.96128 4.22255 4.66838 4.71600 4.72556 4.87047 5.09773 5.28544 5.36918 5.43723 5.47248 5.48286 5.56378 5.58530 5.61166 5.72698 5.78144 5.83755 5.88962 6.03760 6.11129 6.15010 6.24712 6.26702 6.33240 6.35579 6.44478 6.67453 6.71894 6.91843 6.99799 7.03206 7.10634 7.25946 7.42570 7.63871 7.69970 7.81058 7.93801 8.07456 8.21822 8.54699 8.85565 8.86886 9.00117 10.22768 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.004022 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.772450 B = 6960.406365 C = 8387.840248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.620 5.620 3 C 0.127 3.873 4 C -0.092 4.092 5 H 0.076 0.924 6 C -0.101 4.101 7 C -0.120 4.120 8 C -0.114 4.114 9 C -0.149 4.149 10 C 0.113 3.887 11 H 0.050 0.950 12 O -0.554 6.554 13 C 0.565 3.435 14 O -0.537 6.537 15 C -0.130 4.130 16 C -0.233 4.233 17 C -0.105 4.105 18 C -0.207 4.207 19 C 0.098 3.902 20 C -0.462 4.462 21 H 0.079 0.921 22 C 0.072 3.928 23 N -0.797 5.797 24 Si 0.912 3.088 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.274 1.274 28 C -0.087 4.087 29 H 0.052 0.948 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.370 0.630 43 H 0.117 0.883 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.281 0.719 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 15.799 0.888 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.354 5.354 3 C 0.004 3.996 4 C -0.112 4.112 5 H 0.094 0.906 6 C -0.139 4.139 7 C -0.158 4.158 8 C -0.151 4.151 9 C -0.187 4.187 10 C 0.053 3.947 11 H 0.068 0.932 12 O -0.359 6.359 13 C 0.357 3.643 14 O -0.414 6.414 15 C -0.133 4.133 16 C -0.252 4.252 17 C -0.123 4.123 18 C -0.227 4.227 19 C 0.095 3.905 20 C -0.492 4.492 21 H 0.098 0.902 22 C -0.145 4.145 23 N -0.422 5.422 24 Si 0.736 3.264 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.200 1.200 28 C -0.107 4.107 29 H 0.070 0.930 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.216 0.784 43 H 0.134 0.866 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.325 15.247 1.065 15.341 hybrid contribution 0.340 0.075 0.473 0.587 sum -0.985 15.321 1.539 15.430 Atomic orbital electron populations 1.22497 0.80292 1.04098 1.00651 1.47716 1.06617 1.05686 1.75404 1.21330 0.97841 0.84667 0.95725 1.21590 0.98484 0.93632 0.97491 0.90613 1.21475 1.00390 0.98087 0.93919 1.21565 1.00163 0.96140 0.97914 1.21439 0.99143 0.95107 0.99424 1.22220 1.00709 0.98705 0.97045 1.21745 0.85540 0.96726 0.90667 0.93218 1.86635 1.35191 1.36908 1.77162 1.18871 0.87077 0.83709 0.74683 1.90704 1.14059 1.87262 1.49404 1.19511 0.95510 0.92446 1.05841 1.21280 0.95897 0.97871 1.10137 1.20492 0.98113 0.93163 1.00571 1.21184 0.96034 0.96510 1.08934 1.17613 0.90134 0.93106 0.89628 1.19599 1.20307 0.94214 1.15033 0.90248 1.25911 0.95769 0.97655 0.95189 1.69754 1.28863 1.27662 1.15958 0.86203 0.79741 0.81622 0.78823 1.18462 1.19678 1.19981 1.21661 1.00099 0.90320 0.98601 0.92972 0.87722 0.92985 0.91694 0.89347 0.91289 0.90632 0.92081 0.92756 0.91429 0.92734 0.91329 0.92129 0.78413 0.86555 0.88942 0.88711 0.90759 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 8.68 59.85 0.52 1.47 16 2 N -0.62 -10.74 2.76 -182.67 -0.50 -11.25 16 3 C 0.13 1.92 4.80 -4.04 -0.02 1.90 16 4 C -0.09 -1.27 2.23 -90.62 -0.20 -1.47 16 5 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.10 -1.70 3.74 -26.73 -0.10 -1.80 16 7 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 8 C -0.11 -1.30 5.78 -26.72 -0.15 -1.45 16 9 C -0.15 -1.43 5.64 -26.73 -0.15 -1.58 16 10 C 0.11 1.22 3.21 -26.73 -0.09 1.14 16 11 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 12 O -0.55 -6.43 11.39 -35.23 -0.40 -6.83 16 13 C 0.56 12.48 6.25 -12.31 -0.08 12.40 16 14 O -0.54 -13.34 14.01 5.33 0.07 -13.27 16 15 C -0.13 -3.08 5.56 -105.04 -0.58 -3.66 16 16 C -0.23 -4.84 7.56 -38.92 -0.29 -5.13 16 17 C -0.11 -2.22 10.01 -39.72 -0.40 -2.62 16 18 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 19 C 0.10 2.59 5.55 -106.87 -0.59 2.00 16 20 C -0.46 -12.27 9.06 -37.73 -0.34 -12.61 16 21 H 0.08 2.02 7.87 -52.49 -0.41 1.60 16 22 C 0.07 1.84 5.26 -17.34 -0.09 1.75 16 23 N -0.80 -21.21 10.82 55.55 0.60 -20.60 16 24 Si 0.91 19.12 29.57 -169.99 -5.03 14.10 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 C -0.09 -2.32 8.19 -38.44 -0.32 -2.64 16 29 H 0.05 0.65 7.20 -51.93 -0.37 0.28 16 30 H 0.10 1.67 4.93 -51.93 -0.26 1.42 16 31 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.09 1.56 7.18 -51.93 -0.37 1.19 16 34 H 0.07 1.42 5.97 -51.93 -0.31 1.11 16 35 H 0.07 1.45 7.47 -51.93 -0.39 1.06 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.37 2.62 9.08 45.56 0.41 3.03 16 43 H 0.12 2.02 4.14 -52.48 -0.22 1.80 16 44 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 45 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 46 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 47 H 0.13 3.89 5.95 -52.49 -0.31 3.58 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -30.42 362.15 -9.63 -40.05 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -6.41 Total: 11.81 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -3.42 Total: -19.47 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.10 Total: -31.85 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.33 Total: -20.09 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.42 -9.63 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272154978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.117 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds