Wall clock time and date at job start Tue Mar 31 2020 11:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 120.00128 * 2 1 4 4 C 1.52994 * 109.47039 * 89.99632 * 3 2 1 5 5 H 1.08993 * 109.47611 * 305.00255 * 4 3 2 6 6 C 1.53008 * 109.47259 * 65.00519 * 4 3 2 7 7 C 1.52994 * 109.47259 * 180.02562 * 6 4 3 8 8 C 1.53011 * 109.46947 * 299.99440 * 7 6 4 9 9 C 1.53005 * 109.46890 * 60.00519 * 8 7 6 10 10 C 1.53003 * 109.46573 * 299.99761 * 9 8 7 11 11 H 1.09008 * 109.46862 * 179.97438 * 10 9 8 12 12 O 1.42896 * 109.47548 * 299.99953 * 10 9 8 13 13 C 1.34777 * 120.00045 * 179.97438 * 2 1 3 14 14 O 1.21545 * 120.00024 * 184.38457 * 13 2 1 15 15 C 1.47887 * 119.99757 * 4.38593 * 13 2 1 16 16 C 1.39918 * 120.02528 * 22.24524 * 15 13 2 17 17 C 1.38328 * 120.35656 * 179.71383 * 16 15 13 18 18 C 1.37755 * 120.41367 * 0.56392 * 17 16 15 19 19 C 1.40754 * 120.03612 * 359.71022 * 18 17 16 20 20 C 1.41438 * 120.17521 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00220 * 28.87667 * 20 19 18 22 22 C 1.39943 * 119.99928 * 208.87408 * 20 19 18 23 23 N 1.30827 * 120.00076 * 10.23548 * 22 20 19 24 24 Si 1.86799 * 119.99755 * 190.23393 * 22 20 19 25 25 H 1.48494 * 109.47314 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46855 * 120.00138 * 24 22 20 27 27 H 1.48495 * 109.46843 * 239.99767 * 24 22 20 28 28 C 1.38996 * 120.02438 * 202.51413 * 15 13 2 29 29 H 1.09001 * 109.46641 * 84.52038 * 1 2 3 30 30 H 1.08996 * 109.47196 * 204.52553 * 1 2 3 31 31 H 1.09002 * 109.46781 * 324.52203 * 1 2 3 32 32 H 1.09003 * 109.46808 * 329.99611 * 3 2 1 33 33 H 1.09002 * 109.47152 * 210.00137 * 3 2 1 34 34 H 1.09003 * 109.46509 * 299.99525 * 6 4 3 35 35 H 1.08993 * 109.47025 * 59.99376 * 6 4 3 36 36 H 1.09000 * 109.47294 * 180.02562 * 7 6 4 37 37 H 1.08992 * 109.47578 * 59.99181 * 7 6 4 38 38 H 1.08992 * 109.46770 * 300.00236 * 8 7 6 39 39 H 1.09000 * 109.46902 * 180.02562 * 8 7 6 40 40 H 1.08990 * 109.47388 * 59.99521 * 9 8 7 41 41 H 1.08999 * 109.46955 * 180.02562 * 9 8 7 42 42 H 0.96700 * 113.99908 * 300.00896 * 12 10 9 43 43 H 1.08005 * 119.82183 * 359.97287 * 16 15 13 44 44 H 1.08005 * 119.79474 * 180.25379 * 17 16 15 45 45 H 1.08000 * 119.98285 * 179.74297 * 18 17 16 46 46 H 0.96992 * 119.99943 * 180.02562 * 23 22 20 47 47 H 1.07999 * 120.20040 * 0.02788 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7104 1.4424 5 1 1.5062 1.7550 1.9815 6 6 3.3824 0.7063 2.1266 7 6 3.6368 1.1476 3.5692 8 6 4.2901 2.5312 3.5716 9 6 3.3603 3.5354 2.8875 10 6 3.1059 3.0940 1.4448 11 1 2.4430 3.8091 0.9576 12 8 4.3467 3.0360 0.7385 13 6 2.1389 -1.1672 0.0005 14 8 3.3517 -1.1687 0.0810 15 6 1.4027 -2.4461 -0.0969 16 6 0.1149 -2.4727 -0.6433 17 6 -0.5776 -3.6660 -0.7431 18 6 -0.0125 -4.8398 -0.2953 19 6 1.2797 -4.8317 0.2626 20 6 1.8629 -6.0353 0.7228 21 1 1.5894 -6.9761 0.2686 22 6 2.7944 -6.0069 1.7668 23 7 2.9784 -4.9063 2.4497 24 14 3.7752 -7.5407 2.1852 25 1 3.3829 -8.6437 1.2716 26 1 5.2249 -7.2593 2.0285 27 1 3.4970 -7.9384 3.5886 28 6 1.9873 -3.6216 0.3596 29 1 -0.3632 0.0981 -1.0230 30 1 -0.3633 -0.9349 0.4266 31 1 -0.3633 0.8369 0.5965 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1384 -0.5139 34 1 2.9167 -0.2793 2.1253 35 1 4.3287 0.6617 1.5876 36 1 4.2996 0.4325 4.0565 37 1 2.6904 1.1919 4.1080 38 1 5.2366 2.4869 3.0329 39 1 4.4718 2.8454 4.5994 40 1 2.4138 3.5796 3.4262 41 1 3.8259 4.5210 2.8888 42 1 4.8171 3.8800 0.7000 43 1 -0.3392 -1.5573 -0.9930 44 1 -1.5695 -3.6768 -1.1703 45 1 -0.5611 -5.7669 -0.3728 46 1 3.6243 -4.8866 3.1730 47 1 2.9792 -3.6050 0.7865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272154978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:34 Heat of formation + Delta-G solvation = -82.620344 kcal Electronic energy + Delta-G solvation = -27535.936136 eV Core-core repulsion = 23875.433729 eV Total energy + Delta-G solvation = -3660.502407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.44284 -40.03690 -38.74594 -36.74103 -35.93574 -35.49979 -33.17829 -31.52107 -31.24490 -30.79911 -28.31573 -27.08449 -26.72839 -23.92700 -23.30344 -22.77733 -22.16490 -20.65438 -20.41037 -19.23395 -17.74790 -17.51606 -17.41190 -17.03810 -16.73239 -16.54952 -15.84021 -15.55322 -15.25146 -15.04365 -14.95187 -14.62791 -14.42962 -14.12559 -14.06276 -13.75926 -13.57848 -13.36454 -13.22459 -13.03596 -12.88946 -12.81430 -12.70616 -12.41642 -12.26808 -11.94968 -11.93301 -11.82212 -11.60175 -11.47987 -11.33752 -11.11062 -10.98339 -10.57651 -10.56858 -9.61571 -9.36158 -9.27998 -8.61423 -6.40355 0.44982 1.01129 1.34003 1.44531 1.49873 2.05748 2.17351 2.22045 2.79959 3.40769 3.66727 3.74029 3.80757 3.81417 3.97190 4.16432 4.23103 4.32969 4.35696 4.44002 4.48962 4.51819 4.58021 4.65837 4.69021 4.70847 4.80655 4.90762 4.93933 4.97415 5.06007 5.09345 5.10110 5.21705 5.22321 5.27958 5.31492 5.34678 5.41892 5.53330 5.59823 5.72344 5.86038 5.96628 6.06931 6.29904 6.43872 6.64727 6.89594 6.95808 7.04896 7.34537 8.34452 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.004022 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.772450 B = 6960.406365 C = 8387.840248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.609 5.609 3 C 0.126 3.874 4 C -0.090 4.090 5 H 0.092 0.908 6 C -0.092 4.092 7 C -0.120 4.120 8 C -0.110 4.110 9 C -0.143 4.143 10 C 0.116 3.884 11 H 0.084 0.916 12 O -0.581 6.581 13 C 0.556 3.444 14 O -0.582 6.582 15 C -0.142 4.142 16 C -0.207 4.207 17 C -0.102 4.102 18 C -0.212 4.212 19 C 0.064 3.936 20 C -0.500 4.500 21 H 0.081 0.919 22 C 0.026 3.974 23 N -0.838 5.838 24 Si 0.984 3.016 25 H -0.251 1.251 26 H -0.273 1.273 27 H -0.263 1.263 28 C -0.125 4.125 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.390 0.610 43 H 0.163 0.837 44 H 0.141 0.859 45 H 0.108 0.892 46 H 0.282 0.718 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 18.942 0.283 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.341 5.341 3 C 0.004 3.996 4 C -0.109 4.109 5 H 0.110 0.890 6 C -0.130 4.130 7 C -0.158 4.158 8 C -0.147 4.147 9 C -0.180 4.180 10 C 0.057 3.943 11 H 0.102 0.898 12 O -0.389 6.389 13 C 0.347 3.653 14 O -0.463 6.463 15 C -0.145 4.145 16 C -0.226 4.226 17 C -0.120 4.120 18 C -0.232 4.232 19 C 0.062 3.938 20 C -0.530 4.530 21 H 0.099 0.901 22 C -0.186 4.186 23 N -0.465 5.465 24 Si 0.804 3.196 25 H -0.174 1.174 26 H -0.198 1.198 27 H -0.188 1.188 28 C -0.146 4.146 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.239 0.761 43 H 0.180 0.820 44 H 0.159 0.841 45 H 0.126 0.874 46 H 0.093 0.907 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.207 18.438 0.448 18.917 hybrid contribution 1.100 -0.750 0.568 1.448 sum -3.106 17.687 1.016 17.987 Atomic orbital electron populations 1.22711 0.77721 1.04857 1.03113 1.47747 1.08231 1.04922 1.73212 1.21520 0.96967 0.84251 0.96865 1.21599 0.98567 0.94613 0.96134 0.88996 1.21267 0.98977 0.96966 0.95776 1.21562 1.00556 0.97784 0.95889 1.21401 0.98868 0.93704 1.00731 1.22210 1.00910 0.99104 0.95806 1.21769 0.85716 0.94921 0.91926 0.89788 1.86613 1.35935 1.38925 1.77385 1.18807 0.86604 0.84869 0.74996 1.90678 1.16001 1.87978 1.51622 1.19843 0.96936 0.92367 1.05377 1.21865 0.94012 0.99806 1.06923 1.21005 0.99904 0.91908 0.99186 1.21491 0.95085 0.98444 1.08140 1.17944 0.91703 0.93173 0.90960 1.19870 1.22345 0.94478 1.16339 0.90082 1.26809 0.96390 1.00777 0.94666 1.69882 1.29910 1.29910 1.16793 0.85135 0.77684 0.77708 0.79052 1.17436 1.19793 1.18797 1.21416 0.99291 0.92307 1.01553 0.89926 0.89670 0.89008 0.87226 0.92687 0.96307 0.94398 0.94212 0.91750 0.92744 0.90998 0.90056 0.89196 0.76119 0.81965 0.84103 0.87427 0.90739 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.37 8.68 127.77 1.11 2.48 16 2 N -0.61 -20.36 2.76 -850.13 -2.35 -22.71 16 3 C 0.13 3.58 4.80 86.38 0.41 3.99 16 4 C -0.09 -2.33 2.23 -10.79 -0.02 -2.35 16 5 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 6 C -0.09 -3.29 3.74 30.59 0.11 -3.17 16 7 C -0.12 -3.51 5.92 30.60 0.18 -3.33 16 8 C -0.11 -2.36 5.78 30.60 0.18 -2.19 16 9 C -0.14 -2.21 5.64 30.60 0.17 -2.04 16 10 C 0.12 2.13 3.21 30.60 0.10 2.23 16 11 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 12 O -0.58 -12.57 11.39 -148.98 -1.70 -14.27 16 13 C 0.56 25.63 6.25 86.80 0.54 26.17 16 14 O -0.58 -31.50 14.01 -3.86 -0.05 -31.56 16 15 C -0.14 -6.95 5.56 -20.13 -0.11 -7.06 16 16 C -0.21 -8.21 7.56 22.70 0.17 -8.04 16 17 C -0.10 -4.06 10.01 22.18 0.22 -3.83 16 18 C -0.21 -10.09 9.78 22.77 0.22 -9.86 16 19 C 0.06 3.60 5.55 -21.32 -0.12 3.48 16 20 C -0.50 -28.22 9.06 23.47 0.21 -28.01 16 21 H 0.08 4.33 7.87 -2.91 -0.02 4.31 16 22 C 0.03 1.43 5.26 85.26 0.45 1.88 16 23 N -0.84 -48.45 10.82 21.83 0.24 -48.22 16 24 Si 0.98 41.39 29.57 68.60 2.03 43.41 16 25 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 28 C -0.12 -7.21 8.19 23.01 0.19 -7.02 16 29 H 0.08 1.56 7.20 -2.39 -0.02 1.55 16 30 H 0.08 2.43 4.93 -2.39 -0.01 2.42 16 31 H 0.09 1.57 8.11 -2.39 -0.02 1.55 16 32 H 0.11 2.17 8.07 -2.39 -0.02 2.15 16 33 H 0.05 1.97 7.18 -2.39 -0.02 1.95 16 34 H 0.02 0.83 5.97 -2.39 -0.01 0.81 16 35 H 0.04 1.60 7.47 -2.39 -0.02 1.58 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.32 7.68 -2.39 -0.02 1.30 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.39 4.59 9.08 -74.06 -0.67 3.92 16 43 H 0.16 4.89 4.14 -2.91 -0.01 4.88 16 44 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 45 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 46 H 0.28 15.10 8.30 -92.71 -0.77 14.33 16 47 H 0.09 6.04 5.95 -2.91 -0.02 6.02 16 Total: -1.00 -77.19 362.15 2.49 -74.70 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.31 Total: 35.32 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 4.02 Total: -36.69 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -2.11 Total: -70.93 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -1.75 Total: -45.82 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -77.19 2.49 -74.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272154978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.924 kcal (2) G-P(sol) polarization free energy of solvation -77.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds