Wall clock time and date at job start Tue Mar 31 2020 11:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46498 * 119.99818 * 2 1 4 4 C 1.53000 * 109.47347 * 270.00394 * 3 2 1 5 5 H 1.09001 * 109.47329 * 54.99499 * 4 3 2 6 6 C 1.53005 * 109.46768 * 295.00095 * 4 3 2 7 7 C 1.52998 * 109.46774 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46975 * 60.00174 * 7 6 4 9 9 C 1.52996 * 109.47518 * 299.99814 * 8 7 6 10 10 C 1.52996 * 109.47340 * 175.00425 * 4 3 2 11 11 H 1.08994 * 109.47127 * 59.99960 * 10 4 3 12 12 O 1.42908 * 109.46852 * 299.99744 * 10 4 3 13 13 C 1.34768 * 119.99825 * 180.02562 * 2 1 3 14 14 O 1.21555 * 120.00044 * 183.74156 * 13 2 1 15 15 C 1.47889 * 120.00462 * 3.74159 * 13 2 1 16 16 C 1.39911 * 120.02788 * 143.98669 * 15 13 2 17 17 C 1.38327 * 120.36135 * 179.97438 * 16 15 13 18 18 C 1.37756 * 120.41268 * 359.78658 * 17 16 15 19 19 C 1.40751 * 120.03342 * 0.46990 * 18 17 16 20 20 C 1.41446 * 120.17677 * 179.78826 * 19 18 17 21 21 H 1.07997 * 119.99857 * 156.21488 * 20 19 18 22 22 C 1.39940 * 119.99482 * 336.21370 * 20 19 18 23 23 N 1.30824 * 120.00243 * 334.66984 * 22 20 19 24 24 Si 1.86800 * 119.99596 * 154.67449 * 22 20 19 25 25 H 1.48500 * 109.47049 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.46790 * 299.99687 * 24 22 20 27 27 H 1.48498 * 109.47452 * 59.99570 * 24 22 20 28 28 C 1.39000 * 120.02217 * 324.00835 * 15 13 2 29 29 H 1.09004 * 109.46522 * 265.59506 * 1 2 3 30 30 H 1.09002 * 109.47094 * 25.59136 * 1 2 3 31 31 H 1.08996 * 109.47365 * 145.59468 * 1 2 3 32 32 H 1.08999 * 109.47361 * 30.00344 * 3 2 1 33 33 H 1.08994 * 109.46955 * 150.00443 * 3 2 1 34 34 H 1.08994 * 109.47534 * 299.99938 * 6 4 3 35 35 H 1.09002 * 109.46997 * 60.00147 * 6 4 3 36 36 H 1.08999 * 109.47819 * 300.00358 * 7 6 4 37 37 H 1.09007 * 109.47338 * 179.97438 * 7 6 4 38 38 H 1.09004 * 109.47299 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.47215 * 60.00041 * 8 7 6 40 40 H 1.09006 * 109.46769 * 299.99936 * 9 8 7 41 41 H 1.08993 * 109.47478 * 179.97438 * 9 8 7 42 42 H 0.96696 * 113.99481 * 180.02562 * 12 10 4 43 43 H 1.08009 * 119.82248 * 0.02562 * 16 15 13 44 44 H 1.07999 * 119.79835 * 180.02562 * 17 16 15 45 45 H 1.07999 * 119.98416 * 180.25488 * 18 17 16 46 46 H 0.96998 * 120.00021 * 355.07473 * 23 22 20 47 47 H 1.08002 * 120.20218 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5061 1.7550 -1.9815 6 6 3.3823 0.7063 -2.1266 7 6 3.6367 1.1477 -3.5692 8 6 4.2900 2.5312 -3.5715 9 6 3.3603 3.5355 -2.8874 10 6 3.1060 3.0939 -1.4443 11 1 4.0524 3.0493 -0.9054 12 8 2.2376 4.0318 -0.8053 13 6 2.1389 -1.1671 -0.0005 14 8 3.3525 -1.1683 0.0682 15 6 1.4019 -2.4465 -0.0847 16 6 1.9409 -3.5191 -0.8034 17 6 1.2577 -4.7190 -0.8862 18 6 0.0412 -4.8736 -0.2586 19 6 -0.5194 -3.8040 0.4645 20 6 -1.7704 -3.9579 1.1064 21 1 -2.0272 -3.3296 1.9464 22 6 -2.6752 -4.9244 0.6528 23 7 -2.6297 -5.3310 -0.5898 24 14 -3.9480 -5.6336 1.8217 25 1 -4.7802 -6.6307 1.1016 26 1 -3.2606 -6.2924 2.9614 27 1 -4.8153 -4.5412 2.3313 28 6 0.1729 -2.5842 0.5499 29 1 -0.3632 -0.0789 1.0247 30 1 -0.3633 0.9269 -0.4439 31 1 -0.3634 -0.8478 -0.5806 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1384 0.5137 34 1 4.3286 0.6617 -1.5876 35 1 2.9167 -0.2793 -2.1253 36 1 2.6903 1.1920 -4.1080 37 1 4.2995 0.4326 -4.0566 38 1 4.4717 2.8456 -4.5993 39 1 5.2365 2.4870 -3.0328 40 1 2.4138 3.5797 -3.4262 41 1 3.8259 4.5209 -2.8886 42 1 2.5885 4.9322 -0.7706 43 1 2.8960 -3.4099 -1.2957 44 1 1.6824 -5.5411 -1.4431 45 1 -0.4844 -5.8148 -0.3244 46 1 -2.0174 -4.9125 -1.2149 47 1 -0.2473 -1.7587 1.1053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272154982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:39 Heat of formation + Delta-G solvation = -85.718093 kcal Electronic energy + Delta-G solvation = -27191.214093 eV Core-core repulsion = 23530.577357 eV Total energy + Delta-G solvation = -3660.636736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.12459 -38.87652 -37.28817 -35.69890 -35.19160 -33.93892 -31.95590 -29.95275 -29.73650 -29.41063 -26.78154 -25.60327 -25.14069 -22.80219 -22.16673 -21.25051 -20.87843 -19.91305 -19.19211 -17.65043 -17.40402 -16.33186 -15.93029 -15.78507 -15.08508 -14.65678 -14.57736 -14.29489 -14.04603 -13.95055 -13.75881 -13.61296 -13.13395 -12.95227 -12.66787 -12.52173 -12.42585 -12.20667 -11.92406 -11.72285 -11.56118 -11.44664 -11.31396 -11.06217 -10.96497 -10.78874 -10.61165 -10.45292 -10.42383 -10.26103 -10.18604 -9.98952 -9.54381 -9.14989 -9.02187 -8.27204 -7.80166 -7.70891 -7.24572 -4.53449 2.15698 2.70058 3.11872 3.19376 3.32315 3.37529 3.64073 3.96855 4.00573 4.49398 4.52789 4.57201 4.81018 4.94593 5.08597 5.20446 5.24997 5.33928 5.35689 5.37350 5.39349 5.51454 5.61505 5.70969 5.76900 5.80093 5.92800 5.96524 6.02704 6.07070 6.10840 6.15925 6.21114 6.31742 6.34918 6.47823 6.61663 6.73013 6.84640 6.95345 7.18252 7.45918 7.53333 7.57687 7.64155 7.72782 7.89284 8.04564 8.13108 8.60894 8.73790 8.78296 9.98294 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021464 B = 0.003130 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.194799 B = 8943.842493 C = 9512.799645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.615 5.615 3 C 0.124 3.876 4 C -0.092 4.092 5 H 0.076 0.924 6 C -0.107 4.107 7 C -0.123 4.123 8 C -0.116 4.116 9 C -0.148 4.148 10 C 0.112 3.888 11 H 0.056 0.944 12 O -0.566 6.566 13 C 0.566 3.434 14 O -0.550 6.550 15 C -0.100 4.100 16 C -0.198 4.198 17 C -0.091 4.091 18 C -0.203 4.203 19 C 0.089 3.911 20 C -0.521 4.521 21 H 0.076 0.924 22 C 0.039 3.961 23 N -0.796 5.796 24 Si 1.065 2.935 25 H -0.274 1.274 26 H -0.274 1.274 27 H -0.276 1.276 28 C -0.201 4.201 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.374 0.626 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.300 0.700 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.497 14.857 -3.650 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.347 5.347 3 C 0.001 3.999 4 C -0.111 4.111 5 H 0.094 0.906 6 C -0.144 4.144 7 C -0.160 4.160 8 C -0.154 4.154 9 C -0.186 4.186 10 C 0.053 3.947 11 H 0.074 0.926 12 O -0.371 6.371 13 C 0.357 3.643 14 O -0.429 6.429 15 C -0.103 4.103 16 C -0.218 4.218 17 C -0.110 4.110 18 C -0.222 4.222 19 C 0.086 3.914 20 C -0.549 4.549 21 H 0.095 0.905 22 C -0.183 4.183 23 N -0.420 5.420 24 Si 0.888 3.112 25 H -0.199 1.199 26 H -0.200 1.200 27 H -0.201 1.201 28 C -0.221 4.221 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.221 0.779 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.127 0.873 46 H 0.113 0.887 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.517 13.193 -3.493 14.721 hybrid contribution 1.565 1.662 -0.274 2.300 sum 7.082 14.856 -3.767 16.883 Atomic orbital electron populations 1.22211 0.79234 1.03201 1.01998 1.47745 1.07168 1.05534 1.74294 1.21385 0.97951 0.84873 0.95726 1.21529 0.99681 0.92373 0.97549 0.90552 1.21548 0.99757 0.98601 0.94528 1.21596 1.00728 0.96219 0.97466 1.21486 0.98542 0.95098 1.00278 1.22246 1.00668 0.98812 0.96905 1.21802 0.92459 0.88918 0.91541 0.92611 1.86534 1.47866 1.21680 1.81063 1.18900 0.86933 0.83964 0.74458 1.90666 1.14041 1.87657 1.50557 1.19355 0.95756 0.92576 1.02633 1.20287 1.00489 0.93705 1.07328 1.20577 0.95289 0.95989 0.99139 1.21361 0.96797 0.98807 1.05282 1.17601 0.93068 0.90046 0.90709 1.20539 1.00298 1.18642 1.15439 0.90543 1.27005 0.99946 0.93459 0.97855 1.70481 1.31569 1.36320 1.03596 0.83637 0.75210 0.77197 0.75140 1.19855 1.19973 1.20096 1.21551 0.95808 0.97936 1.06787 0.92431 0.92070 0.89148 0.90061 0.90311 0.91362 0.90993 0.92082 0.91819 0.91945 0.91905 0.91185 0.91954 0.77895 0.88439 0.88583 0.87260 0.88657 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 8.82 59.85 0.53 1.72 16 2 N -0.61 -10.50 2.76 -182.67 -0.50 -11.01 16 3 C 0.12 1.81 4.91 -4.04 -0.02 1.79 16 4 C -0.09 -1.19 2.14 -90.62 -0.19 -1.38 16 5 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.11 -1.49 4.02 -26.73 -0.11 -1.59 16 7 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 8 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 9 C -0.15 -1.31 5.55 -26.71 -0.15 -1.46 16 10 C 0.11 1.16 2.90 -26.71 -0.08 1.08 16 11 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 12 O -0.57 -5.63 12.56 -35.23 -0.44 -6.07 16 13 C 0.57 11.66 5.85 -12.31 -0.07 11.59 16 14 O -0.55 -12.26 14.93 5.32 0.08 -12.18 16 15 C -0.10 -2.26 5.31 -105.04 -0.56 -2.82 16 16 C -0.20 -4.51 9.62 -38.92 -0.37 -4.88 16 17 C -0.09 -2.08 10.01 -39.73 -0.40 -2.48 16 18 C -0.20 -5.02 7.91 -38.81 -0.31 -5.32 16 19 C 0.09 2.23 5.34 -106.87 -0.57 1.66 16 20 C -0.52 -13.15 8.99 -37.72 -0.34 -13.49 16 21 H 0.08 1.87 7.96 -52.49 -0.42 1.45 16 22 C 0.04 0.95 4.95 -17.34 -0.09 0.87 16 23 N -0.80 -20.32 12.29 55.55 0.68 -19.64 16 24 Si 1.06 20.79 30.00 -169.99 -5.10 15.69 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 27 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 28 C -0.20 -4.63 7.29 -38.44 -0.28 -4.91 16 29 H 0.06 0.88 6.83 -51.93 -0.35 0.52 16 30 H 0.06 0.80 8.04 -51.93 -0.42 0.39 16 31 H 0.09 1.60 5.76 -51.93 -0.30 1.30 16 32 H 0.08 1.10 7.47 -51.93 -0.39 0.72 16 33 H 0.08 1.24 7.37 -51.93 -0.38 0.86 16 34 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 35 H 0.07 1.23 6.13 -51.93 -0.32 0.91 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.37 2.09 9.08 45.56 0.41 2.51 16 43 H 0.10 2.13 8.01 -52.48 -0.42 1.71 16 44 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 45 H 0.11 2.78 6.33 -52.49 -0.33 2.44 16 46 H 0.30 7.81 6.53 -40.82 -0.27 7.54 16 47 H 0.11 2.36 4.99 -52.49 -0.26 2.10 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -28.64 365.07 -9.57 -38.21 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.46 Total: 11.91 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -3.32 Total: -22.41 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.18 Total: -30.64 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.36 Total: -18.25 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.10 Total: 15.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.64 -9.57 -38.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272154982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.506 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds