Wall clock time and date at job start Tue Mar 31 2020 11:39:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46509 * 1
3 3 C 1.46498 * 119.99818 * 2 1
4 4 C 1.53000 * 109.47347 * 270.00394 * 3 2 1
5 5 H 1.09001 * 109.47329 * 54.99499 * 4 3 2
6 6 C 1.53005 * 109.46768 * 295.00095 * 4 3 2
7 7 C 1.52998 * 109.46774 * 179.97438 * 6 4 3
8 8 C 1.53001 * 109.46975 * 60.00174 * 7 6 4
9 9 C 1.52996 * 109.47518 * 299.99814 * 8 7 6
10 10 C 1.52996 * 109.47340 * 175.00425 * 4 3 2
11 11 H 1.08994 * 109.47127 * 59.99960 * 10 4 3
12 12 O 1.42908 * 109.46852 * 299.99744 * 10 4 3
13 13 C 1.34768 * 119.99825 * 180.02562 * 2 1 3
14 14 O 1.21555 * 120.00044 * 183.74156 * 13 2 1
15 15 C 1.47889 * 120.00462 * 3.74159 * 13 2 1
16 16 C 1.39911 * 120.02788 * 143.98669 * 15 13 2
17 17 C 1.38327 * 120.36135 * 179.97438 * 16 15 13
18 18 C 1.37756 * 120.41268 * 359.78658 * 17 16 15
19 19 C 1.40751 * 120.03342 * 0.46990 * 18 17 16
20 20 C 1.41446 * 120.17677 * 179.78826 * 19 18 17
21 21 H 1.07997 * 119.99857 * 156.21488 * 20 19 18
22 22 C 1.39940 * 119.99482 * 336.21370 * 20 19 18
23 23 N 1.30824 * 120.00243 * 334.66984 * 22 20 19
24 24 Si 1.86800 * 119.99596 * 154.67449 * 22 20 19
25 25 H 1.48500 * 109.47049 * 179.97438 * 24 22 20
26 26 H 1.48500 * 109.46790 * 299.99687 * 24 22 20
27 27 H 1.48498 * 109.47452 * 59.99570 * 24 22 20
28 28 C 1.39000 * 120.02217 * 324.00835 * 15 13 2
29 29 H 1.09004 * 109.46522 * 265.59506 * 1 2 3
30 30 H 1.09002 * 109.47094 * 25.59136 * 1 2 3
31 31 H 1.08996 * 109.47365 * 145.59468 * 1 2 3
32 32 H 1.08999 * 109.47361 * 30.00344 * 3 2 1
33 33 H 1.08994 * 109.46955 * 150.00443 * 3 2 1
34 34 H 1.08994 * 109.47534 * 299.99938 * 6 4 3
35 35 H 1.09002 * 109.46997 * 60.00147 * 6 4 3
36 36 H 1.08999 * 109.47819 * 300.00358 * 7 6 4
37 37 H 1.09007 * 109.47338 * 179.97438 * 7 6 4
38 38 H 1.09004 * 109.47299 * 179.97438 * 8 7 6
39 39 H 1.09002 * 109.47215 * 60.00041 * 8 7 6
40 40 H 1.09006 * 109.46769 * 299.99936 * 9 8 7
41 41 H 1.08993 * 109.47478 * 179.97438 * 9 8 7
42 42 H 0.96696 * 113.99481 * 180.02562 * 12 10 4
43 43 H 1.08009 * 119.82248 * 0.02562 * 16 15 13
44 44 H 1.07999 * 119.79835 * 180.02562 * 17 16 15
45 45 H 1.07999 * 119.98416 * 180.25488 * 18 17 16
46 46 H 0.96998 * 120.00021 * 355.07473 * 23 22 20
47 47 H 1.08002 * 120.20218 * 0.02562 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7105 -1.4425
5 1 1.5061 1.7550 -1.9815
6 6 3.3823 0.7063 -2.1266
7 6 3.6367 1.1477 -3.5692
8 6 4.2900 2.5312 -3.5715
9 6 3.3603 3.5355 -2.8874
10 6 3.1060 3.0939 -1.4443
11 1 4.0524 3.0493 -0.9054
12 8 2.2376 4.0318 -0.8053
13 6 2.1389 -1.1671 -0.0005
14 8 3.3525 -1.1683 0.0682
15 6 1.4019 -2.4465 -0.0847
16 6 1.9409 -3.5191 -0.8034
17 6 1.2577 -4.7190 -0.8862
18 6 0.0412 -4.8736 -0.2586
19 6 -0.5194 -3.8040 0.4645
20 6 -1.7704 -3.9579 1.1064
21 1 -2.0272 -3.3296 1.9464
22 6 -2.6752 -4.9244 0.6528
23 7 -2.6297 -5.3310 -0.5898
24 14 -3.9480 -5.6336 1.8217
25 1 -4.7802 -6.6307 1.1016
26 1 -3.2606 -6.2924 2.9614
27 1 -4.8153 -4.5412 2.3313
28 6 0.1729 -2.5842 0.5499
29 1 -0.3632 -0.0789 1.0247
30 1 -0.3633 0.9269 -0.4439
31 1 -0.3634 -0.8478 -0.5806
32 1 1.6085 2.0284 0.5139
33 1 3.1499 1.1384 0.5137
34 1 4.3286 0.6617 -1.5876
35 1 2.9167 -0.2793 -2.1253
36 1 2.6903 1.1920 -4.1080
37 1 4.2995 0.4326 -4.0566
38 1 4.4717 2.8456 -4.5993
39 1 5.2365 2.4870 -3.0328
40 1 2.4138 3.5797 -3.4262
41 1 3.8259 4.5209 -2.8886
42 1 2.5885 4.9322 -0.7706
43 1 2.8960 -3.4099 -1.2957
44 1 1.6824 -5.5411 -1.4431
45 1 -0.4844 -5.8148 -0.3244
46 1 -2.0174 -4.9125 -1.2149
47 1 -0.2473 -1.7587 1.1053
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000272154982.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:39:39
Heat of formation + Delta-G solvation = -85.718093 kcal
Electronic energy + Delta-G solvation = -27191.214093 eV
Core-core repulsion = 23530.577357 eV
Total energy + Delta-G solvation = -3660.636736 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.178 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-40.12459 -38.87652 -37.28817 -35.69890 -35.19160 -33.93892 -31.95590 -29.95275
-29.73650 -29.41063 -26.78154 -25.60327 -25.14069 -22.80219 -22.16673 -21.25051
-20.87843 -19.91305 -19.19211 -17.65043 -17.40402 -16.33186 -15.93029 -15.78507
-15.08508 -14.65678 -14.57736 -14.29489 -14.04603 -13.95055 -13.75881 -13.61296
-13.13395 -12.95227 -12.66787 -12.52173 -12.42585 -12.20667 -11.92406 -11.72285
-11.56118 -11.44664 -11.31396 -11.06217 -10.96497 -10.78874 -10.61165 -10.45292
-10.42383 -10.26103 -10.18604 -9.98952 -9.54381 -9.14989 -9.02187 -8.27204
-7.80166 -7.70891 -7.24572 -4.53449 2.15698 2.70058 3.11872 3.19376
3.32315 3.37529 3.64073 3.96855 4.00573 4.49398 4.52789 4.57201
4.81018 4.94593 5.08597 5.20446 5.24997 5.33928 5.35689 5.37350
5.39349 5.51454 5.61505 5.70969 5.76900 5.80093 5.92800 5.96524
6.02704 6.07070 6.10840 6.15925 6.21114 6.31742 6.34918 6.47823
6.61663 6.73013 6.84640 6.95345 7.18252 7.45918 7.53333 7.57687
7.64155 7.72782 7.89284 8.04564 8.13108 8.60894 8.73790 8.78296
9.98294
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.021464 B = 0.003130 C = 0.002943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1304.194799 B = 8943.842493 C = 9512.799645
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.615 5.615
3 C 0.124 3.876
4 C -0.092 4.092
5 H 0.076 0.924
6 C -0.107 4.107
7 C -0.123 4.123
8 C -0.116 4.116
9 C -0.148 4.148
10 C 0.112 3.888
11 H 0.056 0.944
12 O -0.566 6.566
13 C 0.566 3.434
14 O -0.550 6.550
15 C -0.100 4.100
16 C -0.198 4.198
17 C -0.091 4.091
18 C -0.203 4.203
19 C 0.089 3.911
20 C -0.521 4.521
21 H 0.076 0.924
22 C 0.039 3.961
23 N -0.796 5.796
24 Si 1.065 2.935
25 H -0.274 1.274
26 H -0.274 1.274
27 H -0.276 1.276
28 C -0.201 4.201
29 H 0.057 0.943
30 H 0.061 0.939
31 H 0.090 0.910
32 H 0.081 0.919
33 H 0.079 0.921
34 H 0.068 0.932
35 H 0.071 0.929
36 H 0.060 0.940
37 H 0.063 0.937
38 H 0.062 0.938
39 H 0.062 0.938
40 H 0.069 0.931
41 H 0.062 0.938
42 H 0.374 0.626
43 H 0.097 0.903
44 H 0.096 0.904
45 H 0.109 0.891
46 H 0.300 0.700
47 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.497 14.857 -3.650 16.621
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.347 5.347
3 C 0.001 3.999
4 C -0.111 4.111
5 H 0.094 0.906
6 C -0.144 4.144
7 C -0.160 4.160
8 C -0.154 4.154
9 C -0.186 4.186
10 C 0.053 3.947
11 H 0.074 0.926
12 O -0.371 6.371
13 C 0.357 3.643
14 O -0.429 6.429
15 C -0.103 4.103
16 C -0.218 4.218
17 C -0.110 4.110
18 C -0.222 4.222
19 C 0.086 3.914
20 C -0.549 4.549
21 H 0.095 0.905
22 C -0.183 4.183
23 N -0.420 5.420
24 Si 0.888 3.112
25 H -0.199 1.199
26 H -0.200 1.200
27 H -0.201 1.201
28 C -0.221 4.221
29 H 0.076 0.924
30 H 0.079 0.921
31 H 0.109 0.891
32 H 0.099 0.901
33 H 0.097 0.903
34 H 0.086 0.914
35 H 0.090 0.910
36 H 0.079 0.921
37 H 0.082 0.918
38 H 0.081 0.919
39 H 0.081 0.919
40 H 0.088 0.912
41 H 0.080 0.920
42 H 0.221 0.779
43 H 0.116 0.884
44 H 0.114 0.886
45 H 0.127 0.873
46 H 0.113 0.887
47 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 5.517 13.193 -3.493 14.721
hybrid contribution 1.565 1.662 -0.274 2.300
sum 7.082 14.856 -3.767 16.883
Atomic orbital electron populations
1.22211 0.79234 1.03201 1.01998 1.47745 1.07168 1.05534 1.74294
1.21385 0.97951 0.84873 0.95726 1.21529 0.99681 0.92373 0.97549
0.90552 1.21548 0.99757 0.98601 0.94528 1.21596 1.00728 0.96219
0.97466 1.21486 0.98542 0.95098 1.00278 1.22246 1.00668 0.98812
0.96905 1.21802 0.92459 0.88918 0.91541 0.92611 1.86534 1.47866
1.21680 1.81063 1.18900 0.86933 0.83964 0.74458 1.90666 1.14041
1.87657 1.50557 1.19355 0.95756 0.92576 1.02633 1.20287 1.00489
0.93705 1.07328 1.20577 0.95289 0.95989 0.99139 1.21361 0.96797
0.98807 1.05282 1.17601 0.93068 0.90046 0.90709 1.20539 1.00298
1.18642 1.15439 0.90543 1.27005 0.99946 0.93459 0.97855 1.70481
1.31569 1.36320 1.03596 0.83637 0.75210 0.77197 0.75140 1.19855
1.19973 1.20096 1.21551 0.95808 0.97936 1.06787 0.92431 0.92070
0.89148 0.90061 0.90311 0.91362 0.90993 0.92082 0.91819 0.91945
0.91905 0.91185 0.91954 0.77895 0.88439 0.88583 0.87260 0.88657
0.87093
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.19 8.82 59.85 0.53 1.72 16
2 N -0.61 -10.50 2.76 -182.67 -0.50 -11.01 16
3 C 0.12 1.81 4.91 -4.04 -0.02 1.79 16
4 C -0.09 -1.19 2.14 -90.62 -0.19 -1.38 16
5 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
6 C -0.11 -1.49 4.02 -26.73 -0.11 -1.59 16
7 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16
8 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16
9 C -0.15 -1.31 5.55 -26.71 -0.15 -1.46 16
10 C 0.11 1.16 2.90 -26.71 -0.08 1.08 16
11 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
12 O -0.57 -5.63 12.56 -35.23 -0.44 -6.07 16
13 C 0.57 11.66 5.85 -12.31 -0.07 11.59 16
14 O -0.55 -12.26 14.93 5.32 0.08 -12.18 16
15 C -0.10 -2.26 5.31 -105.04 -0.56 -2.82 16
16 C -0.20 -4.51 9.62 -38.92 -0.37 -4.88 16
17 C -0.09 -2.08 10.01 -39.73 -0.40 -2.48 16
18 C -0.20 -5.02 7.91 -38.81 -0.31 -5.32 16
19 C 0.09 2.23 5.34 -106.87 -0.57 1.66 16
20 C -0.52 -13.15 8.99 -37.72 -0.34 -13.49 16
21 H 0.08 1.87 7.96 -52.49 -0.42 1.45 16
22 C 0.04 0.95 4.95 -17.34 -0.09 0.87 16
23 N -0.80 -20.32 12.29 55.55 0.68 -19.64 16
24 Si 1.06 20.79 30.00 -169.99 -5.10 15.69 16
25 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16
26 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16
27 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16
28 C -0.20 -4.63 7.29 -38.44 -0.28 -4.91 16
29 H 0.06 0.88 6.83 -51.93 -0.35 0.52 16
30 H 0.06 0.80 8.04 -51.93 -0.42 0.39 16
31 H 0.09 1.60 5.76 -51.93 -0.30 1.30 16
32 H 0.08 1.10 7.47 -51.93 -0.39 0.72 16
33 H 0.08 1.24 7.37 -51.93 -0.38 0.86 16
34 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16
35 H 0.07 1.23 6.13 -51.93 -0.32 0.91 16
36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
42 H 0.37 2.09 9.08 45.56 0.41 2.51 16
43 H 0.10 2.13 8.01 -52.48 -0.42 1.71 16
44 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16
45 H 0.11 2.78 6.33 -52.49 -0.33 2.44 16
46 H 0.30 7.81 6.53 -40.82 -0.27 7.54 16
47 H 0.11 2.36 4.99 -52.49 -0.26 2.10 16
LS Contribution 365.07 15.07 5.50 5.50
Total: -1.00 -28.64 365.07 -9.57 -38.21
By element:
Atomic # 1 Polarization: 18.37 SS G_CDS: -6.46 Total: 11.91 kcal
Atomic # 6 Polarization: -19.09 SS G_CDS: -3.32 Total: -22.41 kcal
Atomic # 7 Polarization: -30.82 SS G_CDS: 0.18 Total: -30.64 kcal
Atomic # 8 Polarization: -17.89 SS G_CDS: -0.36 Total: -18.25 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.10 Total: 15.69 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -28.64 -9.57 -38.21 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000272154982.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.506 kcal
(2) G-P(sol) polarization free energy of solvation -28.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.718 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds