Wall clock time and date at job start Tue Mar 31 2020 11:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46498 * 119.99818 * 2 1 4 4 C 1.53000 * 109.47347 * 270.00394 * 3 2 1 5 5 H 1.09001 * 109.47329 * 54.99499 * 4 3 2 6 6 C 1.53005 * 109.46768 * 295.00095 * 4 3 2 7 7 C 1.52998 * 109.46774 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46975 * 60.00174 * 7 6 4 9 9 C 1.52996 * 109.47518 * 299.99814 * 8 7 6 10 10 C 1.52996 * 109.47340 * 175.00425 * 4 3 2 11 11 H 1.08994 * 109.47127 * 59.99960 * 10 4 3 12 12 O 1.42908 * 109.46852 * 299.99744 * 10 4 3 13 13 C 1.34768 * 119.99825 * 180.02562 * 2 1 3 14 14 O 1.21555 * 120.00044 * 183.74156 * 13 2 1 15 15 C 1.47889 * 120.00462 * 3.74159 * 13 2 1 16 16 C 1.39911 * 120.02788 * 143.98669 * 15 13 2 17 17 C 1.38327 * 120.36135 * 179.97438 * 16 15 13 18 18 C 1.37756 * 120.41268 * 359.78658 * 17 16 15 19 19 C 1.40751 * 120.03342 * 0.46990 * 18 17 16 20 20 C 1.41446 * 120.17677 * 179.78826 * 19 18 17 21 21 H 1.07997 * 119.99857 * 156.21488 * 20 19 18 22 22 C 1.39940 * 119.99482 * 336.21370 * 20 19 18 23 23 N 1.30824 * 120.00243 * 334.66984 * 22 20 19 24 24 Si 1.86800 * 119.99596 * 154.67449 * 22 20 19 25 25 H 1.48500 * 109.47049 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.46790 * 299.99687 * 24 22 20 27 27 H 1.48498 * 109.47452 * 59.99570 * 24 22 20 28 28 C 1.39000 * 120.02217 * 324.00835 * 15 13 2 29 29 H 1.09004 * 109.46522 * 265.59506 * 1 2 3 30 30 H 1.09002 * 109.47094 * 25.59136 * 1 2 3 31 31 H 1.08996 * 109.47365 * 145.59468 * 1 2 3 32 32 H 1.08999 * 109.47361 * 30.00344 * 3 2 1 33 33 H 1.08994 * 109.46955 * 150.00443 * 3 2 1 34 34 H 1.08994 * 109.47534 * 299.99938 * 6 4 3 35 35 H 1.09002 * 109.46997 * 60.00147 * 6 4 3 36 36 H 1.08999 * 109.47819 * 300.00358 * 7 6 4 37 37 H 1.09007 * 109.47338 * 179.97438 * 7 6 4 38 38 H 1.09004 * 109.47299 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.47215 * 60.00041 * 8 7 6 40 40 H 1.09006 * 109.46769 * 299.99936 * 9 8 7 41 41 H 1.08993 * 109.47478 * 179.97438 * 9 8 7 42 42 H 0.96696 * 113.99481 * 180.02562 * 12 10 4 43 43 H 1.08009 * 119.82248 * 0.02562 * 16 15 13 44 44 H 1.07999 * 119.79835 * 180.02562 * 17 16 15 45 45 H 1.07999 * 119.98416 * 180.25488 * 18 17 16 46 46 H 0.96998 * 120.00021 * 355.07473 * 23 22 20 47 47 H 1.08002 * 120.20218 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5061 1.7550 -1.9815 6 6 3.3823 0.7063 -2.1266 7 6 3.6367 1.1477 -3.5692 8 6 4.2900 2.5312 -3.5715 9 6 3.3603 3.5355 -2.8874 10 6 3.1060 3.0939 -1.4443 11 1 4.0524 3.0493 -0.9054 12 8 2.2376 4.0318 -0.8053 13 6 2.1389 -1.1671 -0.0005 14 8 3.3525 -1.1683 0.0682 15 6 1.4019 -2.4465 -0.0847 16 6 1.9409 -3.5191 -0.8034 17 6 1.2577 -4.7190 -0.8862 18 6 0.0412 -4.8736 -0.2586 19 6 -0.5194 -3.8040 0.4645 20 6 -1.7704 -3.9579 1.1064 21 1 -2.0272 -3.3296 1.9464 22 6 -2.6752 -4.9244 0.6528 23 7 -2.6297 -5.3310 -0.5898 24 14 -3.9480 -5.6336 1.8217 25 1 -4.7802 -6.6307 1.1016 26 1 -3.2606 -6.2924 2.9614 27 1 -4.8153 -4.5412 2.3313 28 6 0.1729 -2.5842 0.5499 29 1 -0.3632 -0.0789 1.0247 30 1 -0.3633 0.9269 -0.4439 31 1 -0.3634 -0.8478 -0.5806 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1384 0.5137 34 1 4.3286 0.6617 -1.5876 35 1 2.9167 -0.2793 -2.1253 36 1 2.6903 1.1920 -4.1080 37 1 4.2995 0.4326 -4.0566 38 1 4.4717 2.8456 -4.5993 39 1 5.2365 2.4870 -3.0328 40 1 2.4138 3.5797 -3.4262 41 1 3.8259 4.5209 -2.8886 42 1 2.5885 4.9322 -0.7706 43 1 2.8960 -3.4099 -1.2957 44 1 1.6824 -5.5411 -1.4431 45 1 -0.4844 -5.8148 -0.3244 46 1 -2.0174 -4.9125 -1.2149 47 1 -0.2473 -1.7587 1.1053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272154982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:38 Heat of formation + Delta-G solvation = -101.705327 kcal Electronic energy + Delta-G solvation = -27191.907351 eV Core-core repulsion = 23530.577357 eV Total energy + Delta-G solvation = -3661.329994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.53174 -40.04523 -39.01485 -36.77428 -36.39043 -35.77939 -33.16643 -31.67440 -31.21530 -30.56735 -28.10608 -27.06485 -26.86748 -24.02649 -23.32842 -22.91614 -22.24126 -20.85684 -20.82052 -19.38236 -18.19310 -17.92203 -17.35869 -17.03024 -16.85075 -16.02710 -15.80822 -15.56762 -15.41177 -15.35720 -14.96294 -14.78711 -14.40224 -14.26916 -14.21357 -13.96194 -13.80317 -13.61709 -13.19562 -13.04590 -13.00008 -12.72457 -12.57041 -12.44644 -12.37204 -12.05959 -12.01266 -11.91420 -11.69197 -11.41617 -11.34842 -11.17161 -10.92816 -10.77826 -10.74149 -9.73099 -9.66550 -9.54493 -9.15837 -6.48430 0.34068 0.85470 1.53610 1.60867 1.81607 1.86028 2.05656 2.34486 2.68394 3.23704 3.47950 3.58709 3.62369 3.74237 3.96261 4.09973 4.16287 4.21698 4.28381 4.31614 4.38142 4.39843 4.46255 4.49772 4.56678 4.57559 4.71218 4.75452 4.86221 4.88712 4.90177 4.99506 5.06706 5.10816 5.15055 5.17621 5.23621 5.28585 5.30358 5.45733 5.54366 5.67198 5.70365 5.74957 5.84959 6.13411 6.23704 6.30802 6.69921 6.89394 6.93351 7.13269 8.04260 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021464 B = 0.003130 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.194799 B = 8943.842493 C = 9512.799645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.606 5.606 3 C 0.123 3.877 4 C -0.088 4.088 5 H 0.070 0.930 6 C -0.101 4.101 7 C -0.121 4.121 8 C -0.113 4.113 9 C -0.142 4.142 10 C 0.119 3.881 11 H 0.060 0.940 12 O -0.579 6.579 13 C 0.564 3.436 14 O -0.573 6.573 15 C -0.107 4.107 16 C -0.205 4.205 17 C -0.090 4.090 18 C -0.222 4.222 19 C 0.065 3.935 20 C -0.547 4.547 21 H 0.079 0.921 22 C 0.006 3.994 23 N -0.815 5.815 24 Si 1.115 2.885 25 H -0.274 1.274 26 H -0.267 1.267 27 H -0.255 1.255 28 C -0.198 4.198 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.395 0.605 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.096 0.904 46 H 0.286 0.714 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 17.147 -3.500 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.337 5.337 3 C 0.002 3.998 4 C -0.107 4.107 5 H 0.088 0.912 6 C -0.139 4.139 7 C -0.158 4.158 8 C -0.150 4.150 9 C -0.180 4.180 10 C 0.060 3.940 11 H 0.078 0.922 12 O -0.387 6.387 13 C 0.355 3.645 14 O -0.454 6.454 15 C -0.110 4.110 16 C -0.225 4.225 17 C -0.109 4.109 18 C -0.241 4.241 19 C 0.062 3.938 20 C -0.575 4.575 21 H 0.097 0.903 22 C -0.211 4.211 23 N -0.439 5.439 24 Si 0.932 3.068 25 H -0.198 1.198 26 H -0.191 1.191 27 H -0.179 1.179 28 C -0.218 4.218 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.245 0.755 43 H 0.123 0.877 44 H 0.138 0.862 45 H 0.114 0.886 46 H 0.098 0.902 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.504 15.543 -3.352 16.826 hybrid contribution 1.654 1.036 -0.352 1.984 sum 7.158 16.580 -3.704 18.435 Atomic orbital electron populations 1.22239 0.78202 1.03860 1.02300 1.47770 1.07856 1.05458 1.72583 1.21568 0.97362 0.83743 0.97169 1.21459 0.99372 0.94049 0.95858 0.91180 1.21426 0.98893 0.97186 0.96417 1.21581 1.00947 0.97875 0.95436 1.21473 0.98489 0.93537 1.01540 1.22206 1.00544 0.99883 0.95381 1.21637 0.92043 0.87492 0.92867 0.92238 1.86472 1.48150 1.23078 1.81015 1.18630 0.86573 0.84391 0.74901 1.90647 1.14734 1.88001 1.51987 1.19655 0.95690 0.93728 1.01925 1.20513 1.00806 0.93889 1.07276 1.20810 0.94596 0.96809 0.98649 1.21344 0.97659 0.98460 1.06677 1.17931 0.93724 0.90905 0.91211 1.20763 1.00840 1.19907 1.15990 0.90310 1.28366 1.01248 0.93116 0.98353 1.70586 1.32044 1.37013 1.04222 0.83019 0.73272 0.77147 0.73343 1.19830 1.19144 1.17914 1.21712 0.95810 0.97722 1.06541 0.91700 0.88984 0.91417 0.88333 0.91465 0.92638 0.94735 0.92239 0.91986 0.90233 0.91540 0.91662 0.89273 0.75458 0.87689 0.86157 0.88552 0.90165 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 8.82 127.77 1.13 3.44 16 2 N -0.61 -20.42 2.76 -850.14 -2.35 -22.76 16 3 C 0.12 3.47 4.91 86.38 0.42 3.90 16 4 C -0.09 -2.17 2.14 -10.79 -0.02 -2.20 16 5 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 6 C -0.10 -2.83 4.02 30.60 0.12 -2.70 16 7 C -0.12 -2.63 5.92 30.59 0.18 -2.45 16 8 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 9 C -0.14 -2.07 5.55 30.61 0.17 -1.90 16 10 C 0.12 2.16 2.90 30.61 0.09 2.25 16 11 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 12 O -0.58 -9.70 12.56 -148.98 -1.87 -11.57 16 13 C 0.56 23.49 5.85 86.80 0.51 24.00 16 14 O -0.57 -25.90 14.93 -3.89 -0.06 -25.96 16 15 C -0.11 -4.89 5.31 -20.13 -0.11 -5.00 16 16 C -0.20 -9.47 9.62 22.70 0.22 -9.25 16 17 C -0.09 -4.18 10.01 22.18 0.22 -3.96 16 18 C -0.22 -11.28 7.91 22.77 0.18 -11.10 16 19 C 0.06 3.35 5.34 -21.32 -0.11 3.23 16 20 C -0.55 -28.02 8.99 23.47 0.21 -27.81 16 21 H 0.08 3.87 7.96 -2.91 -0.02 3.85 16 22 C 0.01 0.29 4.95 85.26 0.42 0.71 16 23 N -0.82 -42.54 12.29 21.82 0.27 -42.28 16 24 Si 1.11 41.44 30.00 68.60 2.06 43.50 16 25 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 26 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 27 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 28 C -0.20 -9.27 7.29 23.01 0.17 -9.11 16 29 H 0.06 1.89 6.83 -2.38 -0.02 1.88 16 30 H 0.09 2.23 8.04 -2.39 -0.02 2.21 16 31 H 0.07 2.40 5.76 -2.39 -0.01 2.39 16 32 H 0.10 2.45 7.47 -2.39 -0.02 2.44 16 33 H 0.07 2.08 7.37 -2.39 -0.02 2.06 16 34 H 0.05 1.66 8.06 -2.39 -0.02 1.64 16 35 H 0.03 1.20 6.13 -2.39 -0.01 1.19 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.40 2.99 9.08 -74.06 -0.67 2.31 16 43 H 0.10 4.64 8.01 -2.91 -0.02 4.62 16 44 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 45 H 0.10 5.09 6.33 -2.91 -0.02 5.07 16 46 H 0.29 15.47 6.53 -92.71 -0.61 14.86 16 47 H 0.13 5.37 4.99 -2.91 -0.01 5.36 16 Total: -1.00 -63.14 365.07 2.50 -60.64 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: 0.47 Total: 38.00 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 3.98 Total: -39.57 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -2.08 Total: -65.04 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.93 Total: -37.53 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.06 Total: 43.50 kcal Total: -63.14 2.50 -60.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272154982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.065 kcal (2) G-P(sol) polarization free energy of solvation -63.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds