Wall clock time and date at job start Tue Mar 31 2020 11:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99972 * 2 1 4 4 C 1.52998 * 112.84928 * 294.67572 * 3 2 1 5 5 C 1.50701 * 109.47286 * 291.10262 * 4 3 2 6 6 O 1.21281 * 119.99950 * 355.51175 * 5 4 3 7 7 N 1.34777 * 119.99907 * 175.50932 * 5 4 3 8 8 C 1.46500 * 119.99505 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.47142 * 324.99874 * 8 7 5 10 10 C 1.53000 * 109.46710 * 204.99977 * 8 7 5 11 11 C 1.50698 * 109.47385 * 64.99829 * 10 8 7 12 12 H 1.08000 * 119.99969 * 0.02562 * 11 10 8 13 13 C 1.37872 * 120.00081 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00076 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47013 * 60.00423 * 15 13 11 17 17 H 1.48500 * 109.47516 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47322 * 300.00642 * 15 13 11 19 19 C 1.50705 * 109.47029 * 85.00262 * 8 7 5 20 20 C 1.38234 * 119.99229 * 219.99710 * 19 8 7 21 21 C 1.38241 * 119.99412 * 180.02562 * 20 19 8 22 22 C 1.38235 * 120.00121 * 359.95101 * 21 20 19 23 23 C 1.38238 * 119.99810 * 0.02562 * 22 21 20 24 24 C 1.38230 * 120.00169 * 0.06560 * 23 22 21 25 25 C 1.53780 * 113.69233 * 65.94481 * 3 2 1 26 26 C 1.53776 * 87.08120 * 89.12544 * 25 3 2 27 27 C 1.53774 * 87.08008 * 25.43519 * 26 25 3 28 28 H 1.09000 * 109.47396 * 296.03593 * 1 2 3 29 29 H 1.09002 * 109.47127 * 56.03508 * 1 2 3 30 30 H 1.09001 * 109.47024 * 176.03167 * 1 2 3 31 31 H 1.09003 * 109.47039 * 171.10349 * 4 3 2 32 32 H 1.09001 * 109.47214 * 51.10459 * 4 3 2 33 33 H 0.96998 * 119.99903 * 0.02562 * 7 5 4 34 34 H 1.08997 * 109.47171 * 185.00311 * 10 8 7 35 35 H 1.09011 * 109.47342 * 304.99908 * 10 8 7 36 36 H 0.97000 * 120.00351 * 180.02562 * 14 13 11 37 37 H 1.07993 * 120.00566 * 359.97438 * 20 19 8 38 38 H 1.08005 * 119.99828 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00235 * 179.72317 * 22 21 20 40 40 H 1.08003 * 119.99989 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00034 * 179.97438 * 24 23 22 42 42 H 1.08995 * 113.61809 * 203.67566 * 25 3 2 43 43 H 1.08999 * 113.61595 * 334.57930 * 25 3 2 44 44 H 1.09000 * 113.61989 * 270.88190 * 26 25 3 45 45 H 1.09006 * 113.69087 * 139.98975 * 26 25 3 46 46 H 1.09003 * 113.61415 * 220.01746 * 27 26 25 47 47 H 1.09000 * 113.61857 * 89.12057 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7142 2.0876 -1.2812 5 6 2.4498 1.4576 -2.4357 6 8 3.2061 0.5301 -2.2392 7 7 2.2672 1.9248 -3.6867 8 6 2.9819 1.3120 -4.8090 9 1 3.9729 0.9986 -4.4810 10 6 3.1182 2.3296 -5.9434 11 6 3.9906 3.4721 -5.4913 12 1 4.4067 3.4723 -4.4947 13 6 4.2585 4.5167 -6.3503 14 7 3.7523 4.5163 -7.5642 15 14 5.3405 5.9327 -5.7901 16 1 6.6837 5.4149 -5.4252 17 1 5.4727 6.9204 -6.8911 18 1 4.7251 6.5886 -4.6085 19 6 2.2125 0.1126 -5.2998 20 6 2.8863 -1.0351 -5.6733 21 6 2.1807 -2.1351 -6.1239 22 6 0.8012 -2.0876 -6.2001 23 6 0.1275 -0.9399 -5.8261 24 6 0.8332 0.1606 -5.3772 25 6 1.7372 2.1034 1.2859 26 6 3.0199 1.4744 1.8549 27 6 3.4948 1.3188 0.4007 28 1 -0.3634 0.4511 0.9234 29 1 -0.3633 0.5742 -0.8523 30 1 -0.3633 -1.0252 -0.0711 31 1 2.0429 3.1199 -1.1608 32 1 0.6425 2.0683 -1.4792 33 1 1.6625 2.6669 -3.8437 34 1 3.5701 1.8484 -6.8108 35 1 2.1321 2.7093 -6.2114 36 1 3.9411 5.2511 -8.1687 37 1 3.9640 -1.0722 -5.6138 38 1 2.7071 -3.0317 -6.4162 39 1 0.2502 -2.9454 -6.5564 40 1 -0.9502 -0.9027 -5.8859 41 1 0.3068 1.0574 -5.0854 42 1 1.8026 3.1831 1.1520 43 1 0.8311 1.7947 1.8072 44 1 2.8523 0.5250 2.3636 45 1 3.6250 2.1670 2.4401 46 1 4.0078 0.3766 0.2073 47 1 4.0409 2.1840 0.0247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276825786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:44 Heat of formation + Delta-G solvation = -42.563992 kcal Electronic energy + Delta-G solvation = -27300.672053 eV Core-core repulsion = 23641.906619 eV Total energy + Delta-G solvation = -3658.765433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.35206 -39.21773 -38.00472 -35.53026 -35.07088 -32.72247 -31.43730 -30.46225 -29.79432 -28.62794 -27.08291 -25.47669 -24.93114 -23.13225 -22.25852 -21.91893 -20.32136 -19.61502 -19.36503 -17.04433 -16.47377 -16.27366 -16.11766 -15.90814 -15.16285 -14.97738 -14.89585 -14.54901 -14.41158 -14.11264 -13.88979 -13.62398 -13.09016 -13.00049 -12.79122 -12.48979 -12.33072 -12.09612 -11.99577 -11.61804 -11.50705 -11.29822 -11.12628 -11.00310 -10.89554 -10.81020 -10.71098 -10.61650 -10.42997 -10.08323 -9.76350 -9.48136 -9.32519 -9.08881 -8.51561 -8.44793 -8.33122 -8.14123 -6.09223 -4.12694 1.81907 1.83756 3.24184 3.27320 3.32887 3.35392 3.64478 3.83936 4.26533 4.39155 4.53069 4.60852 4.76961 4.88144 5.20351 5.25015 5.25994 5.28030 5.30301 5.30614 5.37775 5.46388 5.53321 5.57415 5.59630 5.69704 5.74537 5.76081 5.84496 5.94107 5.97523 6.20934 6.22604 6.29930 6.31828 6.39642 6.47805 6.61639 6.87574 6.88768 6.99030 7.15452 7.32508 7.44090 7.50112 7.65482 7.87409 8.21151 8.27298 8.89077 8.92943 9.52112 11.01299 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008494 B = 0.005299 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.642122 B = 5282.391134 C = 7882.025453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.112 3.888 4 C -0.161 4.161 5 C 0.513 3.487 6 O -0.533 6.533 7 N -0.705 5.705 8 C 0.185 3.815 9 H 0.086 0.914 10 C 0.024 3.976 11 C -0.520 4.520 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.069 4.069 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.108 4.108 25 C -0.165 4.165 26 C -0.139 4.139 27 C -0.109 4.109 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.398 0.602 34 H 0.033 0.967 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.413 -6.814 12.630 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.266 6.266 3 C 0.072 3.928 4 C -0.201 4.201 5 C 0.298 3.702 6 O -0.410 6.410 7 N -0.355 5.355 8 C 0.081 3.919 9 H 0.104 0.896 10 C -0.013 4.013 11 C -0.558 4.558 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.070 4.070 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.126 4.126 25 C -0.203 4.203 26 C -0.177 4.177 27 C -0.146 4.146 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.232 0.768 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.748 -7.539 12.593 16.597 hybrid contribution -0.084 1.498 -0.062 1.502 sum -7.833 -6.041 12.530 15.964 Atomic orbital electron populations 1.22735 0.82077 1.02517 0.99706 1.88032 1.18700 1.25319 1.94506 1.22186 0.96066 0.83465 0.91102 1.22200 1.01850 1.01362 0.94737 1.20263 0.82561 0.83576 0.83823 1.90671 1.37298 1.28486 1.84536 1.45997 1.46980 1.36220 1.06277 1.20196 0.93545 0.90618 0.87540 0.89647 1.19380 0.97907 0.92235 0.91791 1.21092 1.30542 1.04579 0.99560 0.92469 1.24986 0.95975 0.98310 0.94862 1.69949 1.44577 1.32376 1.06198 0.86663 0.81225 0.82006 0.78127 1.20204 1.21314 1.20302 1.20562 0.94164 0.95644 0.96631 1.21016 0.99968 0.92678 0.98977 1.21038 0.94283 0.98268 1.00460 1.20980 0.94517 0.97991 1.01885 1.21024 0.99245 0.93766 1.00329 1.20879 0.93900 0.98052 0.99786 1.23584 0.98997 1.00288 0.97434 1.22816 0.96854 1.00899 0.97084 1.22844 0.93963 1.03690 0.94132 0.94246 0.94031 0.89825 0.87923 0.89338 0.76762 0.94884 0.95833 0.92825 0.86244 0.86657 0.86901 0.86842 0.86721 0.89219 0.91172 0.90070 0.91476 0.89773 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.63 101.05 1.07 1.36 16 2 O -0.35 -5.12 10.29 -36.87 -0.38 -5.50 16 3 C 0.11 1.48 0.39 -89.81 -0.04 1.44 16 4 C -0.16 -2.13 5.15 -27.88 -0.14 -2.28 16 5 C 0.51 8.99 7.58 -10.98 -0.08 8.90 16 6 O -0.53 -11.14 14.36 3.91 0.06 -11.08 16 7 N -0.71 -12.66 4.03 -54.93 -0.22 -12.88 16 8 C 0.19 3.80 2.12 -69.08 -0.15 3.66 16 9 H 0.09 1.93 7.44 -51.93 -0.39 1.54 16 10 C 0.02 0.58 4.49 -27.88 -0.13 0.46 16 11 C -0.52 -13.68 8.84 -34.44 -0.30 -13.98 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 15 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.07 -1.30 4.91 -104.62 -0.51 -1.82 16 20 C -0.11 -1.93 9.67 -39.58 -0.38 -2.32 16 21 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 22 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 23 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 24 C -0.11 -1.85 9.32 -39.59 -0.37 -2.22 16 25 C -0.17 -1.70 7.21 -25.92 -0.19 -1.89 16 26 C -0.14 -1.50 8.02 -25.92 -0.21 -1.71 16 27 C -0.11 -1.48 6.07 -25.92 -0.16 -1.64 16 28 H 0.04 0.36 6.85 -51.93 -0.36 0.00 16 29 H 0.04 0.44 6.50 -51.93 -0.34 0.10 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.19 7.99 -51.93 -0.42 0.78 16 32 H 0.09 1.00 6.55 -51.93 -0.34 0.66 16 33 H 0.40 6.54 8.60 -40.82 -0.35 6.19 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.02 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 38 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 41 H 0.11 1.83 7.72 -52.48 -0.41 1.42 16 42 H 0.09 0.81 8.00 -51.93 -0.42 0.39 16 43 H 0.07 0.66 6.81 -51.93 -0.35 0.31 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 1.33 7.98 -51.93 -0.41 0.91 16 47 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -31.62 384.33 -9.45 -41.07 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.54 Total: 8.97 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.87 Total: -17.46 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.51 Total: -37.67 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.32 Total: -16.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.62 -9.45 -41.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276825786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.493 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds