Wall clock time and date at job start Tue Mar 31 2020 11:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99972 * 2 1 4 4 C 1.52998 * 112.84928 * 294.67572 * 3 2 1 5 5 C 1.50701 * 109.47286 * 291.10262 * 4 3 2 6 6 O 1.21281 * 119.99950 * 355.51175 * 5 4 3 7 7 N 1.34777 * 119.99907 * 175.50932 * 5 4 3 8 8 C 1.46500 * 119.99505 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.47142 * 324.99874 * 8 7 5 10 10 C 1.53000 * 109.46710 * 204.99977 * 8 7 5 11 11 C 1.50698 * 109.47385 * 64.99829 * 10 8 7 12 12 H 1.08000 * 119.99969 * 0.02562 * 11 10 8 13 13 C 1.37872 * 120.00081 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00076 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47013 * 60.00423 * 15 13 11 17 17 H 1.48500 * 109.47516 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47322 * 300.00642 * 15 13 11 19 19 C 1.50705 * 109.47029 * 85.00262 * 8 7 5 20 20 C 1.38234 * 119.99229 * 219.99710 * 19 8 7 21 21 C 1.38241 * 119.99412 * 180.02562 * 20 19 8 22 22 C 1.38235 * 120.00121 * 359.95101 * 21 20 19 23 23 C 1.38238 * 119.99810 * 0.02562 * 22 21 20 24 24 C 1.38230 * 120.00169 * 0.06560 * 23 22 21 25 25 C 1.53780 * 113.69233 * 65.94481 * 3 2 1 26 26 C 1.53776 * 87.08120 * 89.12544 * 25 3 2 27 27 C 1.53774 * 87.08008 * 25.43519 * 26 25 3 28 28 H 1.09000 * 109.47396 * 296.03593 * 1 2 3 29 29 H 1.09002 * 109.47127 * 56.03508 * 1 2 3 30 30 H 1.09001 * 109.47024 * 176.03167 * 1 2 3 31 31 H 1.09003 * 109.47039 * 171.10349 * 4 3 2 32 32 H 1.09001 * 109.47214 * 51.10459 * 4 3 2 33 33 H 0.96998 * 119.99903 * 0.02562 * 7 5 4 34 34 H 1.08997 * 109.47171 * 185.00311 * 10 8 7 35 35 H 1.09011 * 109.47342 * 304.99908 * 10 8 7 36 36 H 0.97000 * 120.00351 * 180.02562 * 14 13 11 37 37 H 1.07993 * 120.00566 * 359.97438 * 20 19 8 38 38 H 1.08005 * 119.99828 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00235 * 179.72317 * 22 21 20 40 40 H 1.08003 * 119.99989 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00034 * 179.97438 * 24 23 22 42 42 H 1.08995 * 113.61809 * 203.67566 * 25 3 2 43 43 H 1.08999 * 113.61595 * 334.57930 * 25 3 2 44 44 H 1.09000 * 113.61989 * 270.88190 * 26 25 3 45 45 H 1.09006 * 113.69087 * 139.98975 * 26 25 3 46 46 H 1.09003 * 113.61415 * 220.01746 * 27 26 25 47 47 H 1.09000 * 113.61857 * 89.12057 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7142 2.0876 -1.2812 5 6 2.4498 1.4576 -2.4357 6 8 3.2061 0.5301 -2.2392 7 7 2.2672 1.9248 -3.6867 8 6 2.9819 1.3120 -4.8090 9 1 3.9729 0.9986 -4.4810 10 6 3.1182 2.3296 -5.9434 11 6 3.9906 3.4721 -5.4913 12 1 4.4067 3.4723 -4.4947 13 6 4.2585 4.5167 -6.3503 14 7 3.7523 4.5163 -7.5642 15 14 5.3405 5.9327 -5.7901 16 1 6.6837 5.4149 -5.4252 17 1 5.4727 6.9204 -6.8911 18 1 4.7251 6.5886 -4.6085 19 6 2.2125 0.1126 -5.2998 20 6 2.8863 -1.0351 -5.6733 21 6 2.1807 -2.1351 -6.1239 22 6 0.8012 -2.0876 -6.2001 23 6 0.1275 -0.9399 -5.8261 24 6 0.8332 0.1606 -5.3772 25 6 1.7372 2.1034 1.2859 26 6 3.0199 1.4744 1.8549 27 6 3.4948 1.3188 0.4007 28 1 -0.3634 0.4511 0.9234 29 1 -0.3633 0.5742 -0.8523 30 1 -0.3633 -1.0252 -0.0711 31 1 2.0429 3.1199 -1.1608 32 1 0.6425 2.0683 -1.4792 33 1 1.6625 2.6669 -3.8437 34 1 3.5701 1.8484 -6.8108 35 1 2.1321 2.7093 -6.2114 36 1 3.9411 5.2511 -8.1687 37 1 3.9640 -1.0722 -5.6138 38 1 2.7071 -3.0317 -6.4162 39 1 0.2502 -2.9454 -6.5564 40 1 -0.9502 -0.9027 -5.8859 41 1 0.3068 1.0574 -5.0854 42 1 1.8026 3.1831 1.1520 43 1 0.8311 1.7947 1.8072 44 1 2.8523 0.5250 2.3636 45 1 3.6250 2.1670 2.4401 46 1 4.0078 0.3766 0.2073 47 1 4.0409 2.1840 0.0247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276825786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:43 Heat of formation + Delta-G solvation = -60.706907 kcal Electronic energy + Delta-G solvation = -27301.458789 eV Core-core repulsion = 23641.906619 eV Total energy + Delta-G solvation = -3659.552169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.49894 -40.49745 -39.31865 -36.71521 -36.46761 -34.69732 -32.86328 -31.72851 -30.97838 -30.36934 -27.95024 -26.75654 -26.33157 -24.26550 -23.77492 -23.32870 -21.70754 -21.06132 -20.33879 -18.71373 -17.98160 -17.69746 -17.33916 -17.02412 -16.52576 -16.30462 -16.24547 -15.96012 -15.61178 -15.24049 -15.02926 -14.71017 -14.60500 -14.34437 -14.19381 -14.07422 -13.67039 -13.44319 -13.24425 -13.07407 -12.88391 -12.65413 -12.54124 -12.44036 -12.24749 -12.13865 -11.92576 -11.87319 -11.66778 -11.58435 -11.33491 -11.07841 -10.71547 -10.56199 -10.26430 -9.89528 -9.75590 -9.51222 -8.19952 -6.30491 0.51425 0.55379 1.39978 1.42156 1.49876 1.86592 2.37891 2.40083 2.82755 2.97989 3.14133 3.53653 3.69596 3.75355 3.95450 3.98296 4.03020 4.18242 4.21287 4.30946 4.36968 4.42706 4.47873 4.51315 4.62327 4.65268 4.66111 4.76994 4.79048 4.81413 4.87237 4.90551 5.06529 5.12636 5.19220 5.20628 5.29733 5.31166 5.41809 5.43609 5.60559 5.62547 5.64476 5.77840 5.93682 6.15963 6.20584 6.40936 6.80047 6.81866 7.38313 7.49193 8.90625 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008494 B = 0.005299 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.642122 B = 5282.391134 C = 7882.025453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.380 6.380 3 C 0.103 3.897 4 C -0.154 4.154 5 C 0.508 3.492 6 O -0.572 6.572 7 N -0.702 5.702 8 C 0.202 3.798 9 H 0.053 0.947 10 C 0.039 3.961 11 C -0.529 4.529 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.957 3.043 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.263 1.263 19 C -0.096 4.096 20 C -0.135 4.135 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.147 4.147 26 C -0.130 4.130 27 C -0.123 4.123 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.406 0.594 34 H -0.001 1.001 35 H 0.012 0.988 36 H 0.264 0.736 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 -6.360 14.110 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.299 6.299 3 C 0.063 3.937 4 C -0.194 4.194 5 C 0.296 3.704 6 O -0.451 6.451 7 N -0.352 5.352 8 C 0.097 3.903 9 H 0.071 0.929 10 C 0.002 3.998 11 C -0.567 4.567 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.782 3.218 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.187 1.187 19 C -0.097 4.097 20 C -0.154 4.154 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.184 4.184 26 C -0.167 4.167 27 C -0.161 4.161 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.242 0.758 34 H 0.018 0.982 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.160 0.840 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.067 0.933 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.874 -7.076 14.090 18.604 hybrid contribution 0.571 1.239 -0.580 1.483 sum -9.304 -5.836 13.510 17.411 Atomic orbital electron populations 1.22919 0.80348 1.03271 1.01017 1.87990 1.20764 1.26424 1.94765 1.22335 0.95545 0.83593 0.92272 1.22268 1.02586 1.01886 0.92645 1.21077 0.82065 0.82994 0.84303 1.90658 1.39101 1.30357 1.85029 1.45922 1.46769 1.36439 1.06087 1.19642 0.93034 0.90608 0.87066 0.92905 1.19116 0.96397 0.92379 0.91952 1.21353 1.30649 1.05255 0.99426 0.92791 1.25792 0.97229 1.00925 0.94846 1.70069 1.45963 1.33306 1.07314 0.85633 0.79231 0.78827 0.78137 1.20209 1.20928 1.18739 1.20477 0.95209 0.95363 0.98685 1.21165 0.99929 0.93824 1.00493 1.21378 0.95197 0.98182 0.99468 1.21461 0.94169 0.98964 1.00203 1.21440 1.00964 0.92971 0.98793 1.21053 0.93119 0.99378 1.00338 1.23522 0.99112 1.00857 0.94937 1.22767 0.97334 1.01337 0.95268 1.22893 0.94524 1.01745 0.96925 0.91944 0.93701 0.89375 0.85839 0.86896 0.75838 0.98248 0.97008 0.92735 0.87302 0.84018 0.83104 0.83482 0.86086 0.87277 0.89618 0.90395 0.89708 0.93285 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.63 113.37 1.20 1.61 16 2 O -0.38 -10.95 10.29 -147.41 -1.52 -12.46 16 3 C 0.10 2.59 0.39 -10.27 0.00 2.58 16 4 C -0.15 -3.85 5.15 29.85 0.15 -3.70 16 5 C 0.51 18.14 7.58 87.66 0.66 18.81 16 6 O -0.57 -25.10 14.36 -1.46 -0.02 -25.13 16 7 N -0.70 -25.93 4.03 -446.10 -1.80 -27.73 16 8 C 0.20 8.79 2.12 44.25 0.09 8.89 16 9 H 0.05 2.60 7.44 -2.39 -0.02 2.59 16 10 C 0.04 1.98 4.49 29.85 0.13 2.11 16 11 C -0.53 -28.74 8.84 25.60 0.23 -28.51 16 12 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 13 C 0.01 0.59 5.46 84.65 0.46 1.05 16 14 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 15 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 C -0.10 -3.80 4.91 -19.87 -0.10 -3.89 16 20 C -0.14 -5.07 9.67 22.27 0.22 -4.86 16 21 C -0.12 -3.76 10.05 22.27 0.22 -3.53 16 22 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 23 C -0.12 -3.47 10.05 22.27 0.22 -3.25 16 24 C -0.12 -4.11 9.32 22.27 0.21 -3.90 16 25 C -0.15 -2.57 7.21 31.12 0.22 -2.34 16 26 C -0.13 -2.59 8.02 31.12 0.25 -2.34 16 27 C -0.12 -3.39 6.07 31.12 0.19 -3.20 16 28 H 0.06 0.94 6.85 -2.39 -0.02 0.92 16 29 H 0.04 0.85 6.50 -2.39 -0.02 0.83 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.12 2.58 7.99 -2.39 -0.02 2.56 16 32 H 0.11 2.27 6.55 -2.39 -0.02 2.25 16 33 H 0.41 13.48 8.60 -92.71 -0.80 12.68 16 34 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.11 4.12 8.04 -2.91 -0.02 4.10 16 38 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 41 H 0.12 3.83 7.72 -2.91 -0.02 3.80 16 42 H 0.11 1.51 8.00 -2.39 -0.02 1.49 16 43 H 0.09 1.27 6.81 -2.39 -0.02 1.25 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.05 1.65 7.98 -2.39 -0.02 1.64 16 47 H 0.09 2.35 8.10 -2.39 -0.02 2.33 16 Total: -1.00 -71.93 384.33 3.73 -68.21 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.16 Total: 33.60 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.59 Total: -27.71 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.51 Total: -81.62 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.54 Total: -37.59 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -71.93 3.73 -68.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276825786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.500 kcal (2) G-P(sol) polarization free energy of solvation -71.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds