Wall clock time and date at job start Tue Mar 31 2020 11:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45197 * 109.47276 * 2 1 4 4 C 1.34230 * 117.00491 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99488 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00270 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.24830 * 60.53741 * 6 4 3 8 8 C 1.52728 * 109.25106 * 180.02562 * 6 4 3 9 9 C 1.53329 * 108.38239 * 171.27959 * 8 6 4 10 10 C 1.52733 * 108.37060 * 290.07902 * 9 8 6 11 11 H 1.09001 * 109.25424 * 171.34615 * 10 9 8 12 12 N 1.46901 * 109.25667 * 290.82033 * 10 9 8 13 13 C 1.46902 * 110.99931 * 205.52568 * 12 10 9 14 14 C 1.53001 * 109.47217 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 179.72538 * 17 15 14 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 C 1.50633 * 110.54767 * 51.08804 * 10 9 8 24 24 C 1.38912 * 117.74934 * 162.47317 * 23 10 9 25 25 C 1.37931 * 120.54626 * 179.76867 * 24 23 10 26 26 C 1.38264 * 119.77156 * 359.97416 * 25 24 23 27 27 C 1.37706 * 119.75108 * 0.13059 * 26 25 24 28 28 C 1.37590 * 122.61885 * 342.41801 * 23 10 9 29 29 H 1.09003 * 109.47085 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46874 * 300.00105 * 1 2 3 31 31 H 1.08996 * 109.46823 * 60.00191 * 1 2 3 32 32 H 1.08999 * 109.47465 * 239.99441 * 2 1 3 33 33 H 1.09000 * 109.47217 * 119.99508 * 2 1 3 34 34 H 1.09007 * 109.68302 * 51.55649 * 8 6 4 35 35 H 1.08997 * 109.71560 * 291.01980 * 8 6 4 36 36 H 1.09000 * 109.68602 * 170.36044 * 9 8 6 37 37 H 1.09000 * 109.68576 * 49.80084 * 9 8 6 38 38 H 1.00899 * 110.99705 * 81.57448 * 12 10 9 39 39 H 1.09000 * 109.46932 * 59.99878 * 13 12 10 40 40 H 1.09002 * 109.46978 * 299.99816 * 13 12 10 41 41 H 1.08998 * 109.46837 * 59.99958 * 14 13 12 42 42 H 1.09002 * 109.46926 * 299.99762 * 14 13 12 43 43 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 44 44 H 1.08003 * 119.72437 * 359.77852 * 24 23 10 45 45 H 1.08004 * 120.11213 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.10962 * 180.13471 * 26 25 24 47 47 H 1.08003 * 119.67263 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5899 3.4635 0.8955 8 6 5.4456 2.8517 0.0001 9 6 6.0091 4.2604 -0.2210 10 6 5.7118 4.6774 -1.6599 11 1 5.9668 5.7292 -1.7894 12 7 6.5231 3.8658 -2.5771 13 6 6.7524 4.5736 -3.8438 14 6 7.5984 3.6987 -4.7710 15 6 7.8330 4.4245 -6.0706 16 1 7.4197 5.4109 -6.2206 17 6 8.5754 3.8291 -7.0684 18 7 9.0783 2.6277 -6.8861 19 14 8.8598 4.7256 -8.6824 20 1 10.0997 5.5371 -8.5860 21 1 9.0001 3.7357 -9.7804 22 1 7.7056 5.6167 -8.9637 23 6 4.2530 4.4773 -1.9777 24 6 3.7362 5.1360 -3.0861 25 6 2.4091 4.9900 -3.4326 26 6 1.5858 4.1811 -2.6714 27 6 2.0961 3.5291 -1.5710 28 6 3.4317 3.6759 -1.2184 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.7764 2.1936 -0.8035 35 1 5.7920 2.4640 0.9581 36 1 7.0865 4.2550 -0.0555 37 1 5.5347 4.9582 0.4690 38 1 6.0959 2.9660 -2.7378 39 1 7.2767 5.5088 -3.6476 40 1 5.7950 4.7865 -4.3194 41 1 7.0736 2.7637 -4.9670 42 1 8.5558 3.4853 -4.2956 43 1 9.6009 2.2090 -7.5879 44 1 4.3789 5.7676 -3.6815 45 1 2.0146 5.5058 -4.2956 46 1 0.5464 4.0612 -2.9390 47 1 1.4517 2.8979 -0.9771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282956085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:28 Heat of formation + Delta-G solvation = -76.157162 kcal Electronic energy + Delta-G solvation = -26996.574604 eV Core-core repulsion = 23336.352461 eV Total energy + Delta-G solvation = -3660.222142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21411 -39.75345 -37.13965 -36.48618 -34.95621 -33.14641 -32.04882 -31.25473 -30.21770 -29.41434 -27.82978 -24.83573 -23.85505 -23.10176 -22.61074 -22.36093 -21.07398 -20.43909 -18.93959 -17.92653 -17.22569 -16.63616 -16.32513 -16.21063 -15.59137 -15.39644 -14.74374 -14.45561 -14.41427 -14.06526 -13.70486 -13.57888 -13.30193 -13.15350 -12.83831 -12.73864 -12.38908 -12.34066 -12.22920 -12.08685 -11.90193 -11.73794 -11.28743 -11.16459 -10.96417 -10.86839 -10.79334 -10.66397 -10.56630 -10.51898 -10.33306 -9.99921 -9.33715 -9.15733 -8.74974 -8.70984 -8.33277 -7.76071 -5.97792 -4.00478 1.28286 1.42577 2.08905 2.46539 3.32864 3.38931 3.41733 3.77498 4.34634 4.43856 4.47480 4.64285 4.65898 4.69538 4.81182 4.88819 4.98391 4.99825 5.07197 5.17530 5.28130 5.32216 5.38086 5.40301 5.44507 5.47491 5.64407 5.68737 5.74476 5.88194 5.92945 6.07252 6.09108 6.20422 6.27093 6.34416 6.38111 6.41299 6.52144 6.59068 6.67030 6.99233 7.03995 7.47947 7.60351 7.74410 7.82660 7.95243 8.09861 8.44850 9.06786 9.63091 11.13598 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003151 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.018604 B = 8884.897870 C = 9017.956135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.355 6.355 4 C 0.470 3.530 5 O -0.498 6.498 6 C -0.034 4.034 7 H 0.116 0.884 8 C -0.105 4.105 9 C -0.105 4.105 10 C 0.119 3.881 11 H 0.086 0.914 12 N -0.673 5.673 13 C 0.059 3.941 14 C 0.026 3.974 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.090 4.090 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.080 4.080 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.338 0.662 39 H 0.059 0.941 40 H 0.022 0.978 41 H 0.012 0.988 42 H 0.025 0.975 43 H 0.260 0.740 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.229 0.517 16.915 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.273 6.273 4 C 0.313 3.687 5 O -0.384 6.384 6 C -0.053 4.053 7 H 0.134 0.866 8 C -0.142 4.142 9 C -0.142 4.142 10 C 0.009 3.991 11 H 0.104 0.896 12 N -0.302 5.302 13 C -0.069 4.069 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.092 4.092 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.141 4.141 28 C -0.081 4.081 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.156 0.844 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.289 0.246 17.087 24.310 hybrid contribution -0.802 0.125 -1.541 1.741 sum -18.091 0.371 15.546 23.856 Atomic orbital electron populations 1.21811 0.92636 1.03003 1.03483 1.23055 0.95352 0.80546 1.02741 1.86520 1.24705 1.32011 1.84043 1.23661 0.80494 0.92493 0.72100 1.90688 1.60288 1.42843 1.44564 1.20051 0.97562 0.88747 0.98964 0.86639 1.21504 0.89921 0.98842 1.03949 1.21591 1.02224 0.95256 0.95178 1.20557 0.85780 0.98813 0.93927 0.89590 1.60991 1.48070 1.05916 1.15270 1.22339 0.98535 0.98152 0.87885 1.19053 0.95128 0.94414 0.92571 1.21156 1.32705 1.02493 0.99586 0.92811 1.25006 0.95804 0.94921 0.98635 1.69978 1.35248 1.14182 1.33747 0.86604 0.78554 0.79438 0.83446 1.20634 1.21247 1.19945 1.20475 0.96943 0.96684 0.95075 1.21380 0.95478 0.99832 0.96457 1.21165 0.94006 0.98623 0.99459 1.20988 0.99701 0.97772 0.95771 1.21637 0.94948 0.99792 0.97722 1.19059 0.93858 0.99155 0.96066 0.90283 0.91525 0.91391 0.91083 0.91252 0.89630 0.90752 0.89627 0.91715 0.84372 0.92282 0.95940 0.96934 0.95675 0.93005 0.85442 0.86082 0.86243 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.85 7.15 -39.26 -0.28 -4.13 16 4 C 0.47 5.98 7.06 36.01 0.25 6.23 16 5 O -0.50 -7.72 15.57 -18.75 -0.29 -8.02 16 6 C -0.03 -0.39 2.70 -93.10 -0.25 -0.65 16 7 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.10 -1.28 4.64 -26.70 -0.12 -1.40 16 9 C -0.10 -1.24 5.62 -26.70 -0.15 -1.39 16 10 C 0.12 1.69 2.51 -69.03 -0.17 1.52 16 11 H 0.09 1.21 7.77 -51.93 -0.40 0.81 16 12 N -0.67 -11.94 5.96 -108.13 -0.64 -12.59 16 13 C 0.06 1.22 5.26 -3.82 -0.02 1.20 16 14 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 15 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 23 C -0.09 -1.25 5.02 -104.64 -0.53 -1.78 16 24 C -0.11 -1.60 8.52 -39.44 -0.34 -1.94 16 25 C -0.11 -1.45 10.05 -39.68 -0.40 -1.85 16 26 C -0.12 -1.45 10.04 -39.77 -0.40 -1.85 16 27 C -0.12 -1.48 8.93 -39.52 -0.35 -1.84 16 28 C -0.08 -1.03 5.42 -104.64 -0.57 -1.60 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 34 H 0.09 1.27 6.64 -51.92 -0.34 0.93 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.34 6.29 7.56 -39.29 -0.30 5.99 16 39 H 0.06 1.21 8.05 -51.93 -0.42 0.80 16 40 H 0.02 0.46 5.50 -51.93 -0.29 0.17 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 44 H 0.13 1.86 6.51 -52.48 -0.34 1.52 16 45 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.14 1.52 5.15 -52.48 -0.27 1.25 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -32.15 373.72 -10.25 -42.40 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.40 Total: 4.59 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -2.99 Total: -18.18 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.09 Total: -39.11 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.57 Total: -12.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.15 -10.25 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282956085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.757 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds