Wall clock time and date at job start Tue Mar 31 2020 11:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45197 * 109.47276 * 2 1 4 4 C 1.34230 * 117.00491 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99488 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00270 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.24830 * 60.53741 * 6 4 3 8 8 C 1.52728 * 109.25106 * 180.02562 * 6 4 3 9 9 C 1.53329 * 108.38239 * 171.27959 * 8 6 4 10 10 C 1.52733 * 108.37060 * 290.07902 * 9 8 6 11 11 H 1.09001 * 109.25424 * 171.34615 * 10 9 8 12 12 N 1.46901 * 109.25667 * 290.82033 * 10 9 8 13 13 C 1.46902 * 110.99931 * 205.52568 * 12 10 9 14 14 C 1.53001 * 109.47217 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 179.72538 * 17 15 14 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 C 1.50633 * 110.54767 * 51.08804 * 10 9 8 24 24 C 1.38912 * 117.74934 * 162.47317 * 23 10 9 25 25 C 1.37931 * 120.54626 * 179.76867 * 24 23 10 26 26 C 1.38264 * 119.77156 * 359.97416 * 25 24 23 27 27 C 1.37706 * 119.75108 * 0.13059 * 26 25 24 28 28 C 1.37590 * 122.61885 * 342.41801 * 23 10 9 29 29 H 1.09003 * 109.47085 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46874 * 300.00105 * 1 2 3 31 31 H 1.08996 * 109.46823 * 60.00191 * 1 2 3 32 32 H 1.08999 * 109.47465 * 239.99441 * 2 1 3 33 33 H 1.09000 * 109.47217 * 119.99508 * 2 1 3 34 34 H 1.09007 * 109.68302 * 51.55649 * 8 6 4 35 35 H 1.08997 * 109.71560 * 291.01980 * 8 6 4 36 36 H 1.09000 * 109.68602 * 170.36044 * 9 8 6 37 37 H 1.09000 * 109.68576 * 49.80084 * 9 8 6 38 38 H 1.00899 * 110.99705 * 81.57448 * 12 10 9 39 39 H 1.09000 * 109.46932 * 59.99878 * 13 12 10 40 40 H 1.09002 * 109.46978 * 299.99816 * 13 12 10 41 41 H 1.08998 * 109.46837 * 59.99958 * 14 13 12 42 42 H 1.09002 * 109.46926 * 299.99762 * 14 13 12 43 43 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 44 44 H 1.08003 * 119.72437 * 359.77852 * 24 23 10 45 45 H 1.08004 * 120.11213 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.10962 * 180.13471 * 26 25 24 47 47 H 1.08003 * 119.67263 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5899 3.4635 0.8955 8 6 5.4456 2.8517 0.0001 9 6 6.0091 4.2604 -0.2210 10 6 5.7118 4.6774 -1.6599 11 1 5.9668 5.7292 -1.7894 12 7 6.5231 3.8658 -2.5771 13 6 6.7524 4.5736 -3.8438 14 6 7.5984 3.6987 -4.7710 15 6 7.8330 4.4245 -6.0706 16 1 7.4197 5.4109 -6.2206 17 6 8.5754 3.8291 -7.0684 18 7 9.0783 2.6277 -6.8861 19 14 8.8598 4.7256 -8.6824 20 1 10.0997 5.5371 -8.5860 21 1 9.0001 3.7357 -9.7804 22 1 7.7056 5.6167 -8.9637 23 6 4.2530 4.4773 -1.9777 24 6 3.7362 5.1360 -3.0861 25 6 2.4091 4.9900 -3.4326 26 6 1.5858 4.1811 -2.6714 27 6 2.0961 3.5291 -1.5710 28 6 3.4317 3.6759 -1.2184 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.7764 2.1936 -0.8035 35 1 5.7920 2.4640 0.9581 36 1 7.0865 4.2550 -0.0555 37 1 5.5347 4.9582 0.4690 38 1 6.0959 2.9660 -2.7378 39 1 7.2767 5.5088 -3.6476 40 1 5.7950 4.7865 -4.3194 41 1 7.0736 2.7637 -4.9670 42 1 8.5558 3.4853 -4.2956 43 1 9.6009 2.2090 -7.5879 44 1 4.3789 5.7676 -3.6815 45 1 2.0146 5.5058 -4.2956 46 1 0.5464 4.0612 -2.9390 47 1 1.4517 2.8979 -0.9771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282956085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:27 Heat of formation + Delta-G solvation = -93.846760 kcal Electronic energy + Delta-G solvation = -26997.341682 eV Core-core repulsion = 23336.352461 eV Total energy + Delta-G solvation = -3660.989221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19722 -40.76678 -38.12847 -37.65381 -36.27632 -35.00751 -33.14467 -32.34744 -31.19166 -30.78195 -29.27527 -26.30556 -25.20960 -24.10446 -23.60174 -23.29954 -22.44983 -21.88123 -19.97843 -18.88110 -18.49767 -18.19853 -17.57942 -17.24866 -16.65344 -16.57252 -16.30224 -15.97625 -15.54671 -15.11292 -14.93473 -14.55577 -14.41488 -14.31822 -14.11329 -13.88964 -13.60828 -13.49464 -13.21300 -13.09965 -12.98898 -12.87075 -12.84149 -12.58370 -12.44396 -12.19361 -12.08592 -11.94201 -11.81364 -11.55893 -11.46399 -11.45639 -11.33196 -11.09725 -10.57931 -9.83009 -9.70160 -9.16140 -8.20833 -6.32708 0.30127 0.42255 1.10156 1.38991 1.41076 1.51834 1.60967 2.39525 2.78272 3.12512 3.35764 3.45527 3.55440 3.78451 3.83510 3.99229 4.01226 4.06032 4.13273 4.21755 4.27584 4.35566 4.39253 4.48991 4.53279 4.64902 4.67511 4.80944 4.83867 4.86996 4.93736 4.96214 5.05910 5.08893 5.11669 5.16257 5.27651 5.36333 5.42098 5.45243 5.52954 5.60541 5.61360 5.68977 5.78253 6.06821 6.12611 6.27497 6.44957 6.65122 6.84803 7.36658 8.91491 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003151 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.018604 B = 8884.897870 C = 9017.956135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.350 6.350 4 C 0.472 3.528 5 O -0.533 6.533 6 C -0.031 4.031 7 H 0.150 0.850 8 C -0.102 4.102 9 C -0.097 4.097 10 C 0.119 3.881 11 H 0.087 0.913 12 N -0.678 5.678 13 C 0.079 3.921 14 C 0.033 3.967 15 C -0.541 4.541 16 H 0.062 0.938 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.261 1.261 23 C -0.103 4.103 24 C -0.133 4.133 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.084 4.084 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.331 0.669 39 H 0.062 0.938 40 H 0.027 0.973 41 H -0.018 1.018 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.116 0.884 45 H 0.137 0.863 46 H 0.148 0.852 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.388 1.800 17.498 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.267 6.267 4 C 0.316 3.684 5 O -0.422 6.422 6 C -0.049 4.049 7 H 0.167 0.833 8 C -0.139 4.139 9 C -0.134 4.134 10 C 0.010 3.990 11 H 0.106 0.894 12 N -0.306 5.306 13 C -0.049 4.049 14 C -0.004 4.004 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.185 1.185 23 C -0.105 4.105 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.143 4.143 28 C -0.085 4.085 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.148 0.852 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.000 1.000 42 H 0.011 0.989 43 H 0.072 0.928 44 H 0.134 0.866 45 H 0.155 0.845 46 H 0.165 0.835 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.477 1.553 17.692 26.358 hybrid contribution -0.199 -0.338 -1.678 1.723 sum -19.676 1.215 16.014 25.398 Atomic orbital electron populations 1.21823 0.90103 1.04340 1.03945 1.23304 0.97292 0.79547 1.02301 1.86505 1.23569 1.33181 1.83442 1.23902 0.80877 0.92530 0.71100 1.90680 1.61169 1.44003 1.46337 1.20099 0.96779 0.88244 0.99809 0.83317 1.21432 0.90763 0.98367 1.03361 1.21564 1.02273 0.95649 0.93964 1.20642 0.85857 0.98215 0.94288 0.89448 1.60924 1.49749 1.05849 1.14103 1.21942 0.97603 0.97006 0.88385 1.18899 0.94106 0.94076 0.93351 1.21597 1.32826 1.03014 1.00548 0.91932 1.26015 0.95337 0.95714 1.02847 1.70127 1.36015 1.15995 1.35203 0.85413 0.79022 0.78233 0.78164 1.19617 1.20850 1.18533 1.20398 0.96666 0.97765 0.95668 1.21442 0.96338 1.00490 0.96870 1.21412 0.93538 0.98925 1.00151 1.21335 1.00933 0.96601 0.95056 1.21865 0.94755 0.99738 0.97981 1.19204 0.94212 0.98728 0.96331 0.88543 0.90625 0.91286 0.92330 0.91040 0.92920 0.89442 0.90090 0.88679 0.85197 0.91939 0.95481 0.99959 0.98909 0.92802 0.86578 0.84546 0.83460 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 71.98 0.74 -0.70 16 2 C 0.05 0.82 6.19 71.98 0.45 1.26 16 3 O -0.35 -7.00 7.15 -51.41 -0.37 -7.37 16 4 C 0.47 11.56 7.06 71.24 0.50 12.07 16 5 O -0.53 -16.67 15.57 21.96 0.34 -16.32 16 6 C -0.03 -0.66 2.70 -12.40 -0.03 -0.69 16 7 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 8 C -0.10 -2.41 4.64 30.61 0.14 -2.27 16 9 C -0.10 -2.18 5.62 30.62 0.17 -2.00 16 10 C 0.12 3.36 2.51 44.06 0.11 3.47 16 11 H 0.09 2.42 7.77 -2.39 -0.02 2.40 16 12 N -0.68 -24.87 5.96 -496.01 -2.96 -27.83 16 13 C 0.08 3.39 5.26 86.30 0.45 3.85 16 14 C 0.03 1.83 5.23 29.85 0.16 1.98 16 15 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 16 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 17 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 18 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 19 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 23 C -0.10 -2.81 5.02 -19.88 -0.10 -2.91 16 24 C -0.13 -3.72 8.52 22.36 0.19 -3.53 16 25 C -0.12 -2.93 10.05 22.20 0.22 -2.71 16 26 C -0.12 -2.54 10.04 22.15 0.22 -2.32 16 27 C -0.13 -2.75 8.93 22.31 0.20 -2.56 16 28 C -0.08 -2.02 5.42 -19.88 -0.11 -2.13 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 34 H 0.05 1.61 6.64 -2.38 -0.02 1.60 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 38 H 0.33 12.98 7.56 -89.69 -0.68 12.30 16 39 H 0.06 2.61 8.05 -2.39 -0.02 2.59 16 40 H 0.03 1.13 5.50 -2.39 -0.01 1.12 16 41 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.12 3.42 6.51 -2.91 -0.02 3.40 16 45 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 46 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 47 H 0.16 2.91 5.15 -2.91 -0.01 2.89 16 Total: -1.00 -71.49 373.72 3.63 -67.86 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.29 Total: 25.00 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 4.01 Total: -30.07 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.67 Total: -86.07 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.03 Total: -23.70 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.49 3.63 -67.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282956085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.991 kcal (2) G-P(sol) polarization free energy of solvation -71.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds