Wall clock time and date at job start Tue Mar 31 2020 12:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00388 * 2 1 4 4 H 1.09001 * 109.49524 * 329.99496 * 3 2 1 5 5 C 1.53037 * 109.50163 * 90.06007 * 3 2 1 6 6 C 1.53038 * 109.54126 * 181.28553 * 5 3 2 7 7 C 1.53188 * 109.33897 * 298.68579 * 6 5 3 8 8 N 1.46930 * 108.78073 * 54.61629 * 7 6 5 9 9 C 1.34769 * 120.63262 * 126.36970 * 8 7 6 10 10 O 1.21287 * 120.00070 * 180.02562 * 9 8 7 11 11 C 1.50704 * 120.00190 * 0.02562 * 9 8 7 12 12 C 1.52998 * 109.47107 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46925 * 305.36586 * 12 11 9 14 14 C 1.50699 * 109.47302 * 65.37387 * 12 11 9 15 15 H 1.07998 * 120.00171 * 34.61170 * 14 12 11 16 16 C 1.37879 * 119.99762 * 214.62205 * 14 12 11 17 17 N 1.31515 * 119.99797 * 186.44590 * 16 14 12 18 18 Si 1.86792 * 120.00198 * 6.44193 * 16 14 12 19 19 H 1.48500 * 109.47218 * 85.01208 * 18 16 14 20 20 H 1.48503 * 109.47330 * 205.01322 * 18 16 14 21 21 H 1.48500 * 109.47201 * 325.00848 * 18 16 14 22 22 C 1.50699 * 109.46965 * 185.37365 * 12 11 9 23 23 C 1.38237 * 119.99874 * 296.35613 * 22 12 11 24 24 C 1.38235 * 120.00056 * 179.78867 * 23 22 12 25 25 C 1.38232 * 119.99922 * 0.44151 * 24 23 22 26 26 C 1.38235 * 119.99906 * 359.81359 * 25 24 23 27 27 C 1.38226 * 120.00064 * 359.97438 * 26 25 24 28 28 C 1.46928 * 118.73307 * 306.39741 * 8 7 6 29 29 H 1.09002 * 109.47530 * 300.00624 * 1 2 3 30 30 H 1.09004 * 109.46881 * 60.00125 * 1 2 3 31 31 H 1.08999 * 109.47729 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46193 * 301.33950 * 5 3 2 33 33 H 1.08994 * 109.45918 * 61.29779 * 5 3 2 34 34 H 1.08997 * 109.50329 * 178.71507 * 6 5 3 35 35 H 1.09007 * 109.46954 * 58.63346 * 6 5 3 36 36 H 1.09004 * 109.58982 * 294.83112 * 7 6 5 37 37 H 1.08998 * 109.59154 * 174.40700 * 7 6 5 38 38 H 1.09001 * 109.47330 * 300.00350 * 11 9 8 39 39 H 1.08999 * 109.46927 * 60.00318 * 11 9 8 40 40 H 0.96996 * 119.99876 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00030 * 359.97438 * 23 22 12 42 42 H 1.08007 * 119.99947 * 180.27684 * 24 23 22 43 43 H 1.08005 * 120.00106 * 179.83011 * 25 24 23 44 44 H 1.07996 * 119.99738 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00075 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.58514 * 293.81220 * 28 8 7 47 47 H 1.09007 * 109.69798 * 173.46340 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3454 1.9997 -0.5138 5 6 2.2195 1.7715 1.4426 6 6 2.8123 3.1824 1.4438 7 6 4.1726 3.1617 0.7396 8 7 4.0036 2.5793 -0.5988 9 6 4.4289 3.2399 -1.6938 10 8 4.2831 2.7487 -2.7931 11 6 5.0856 4.5889 -1.5524 12 6 5.4700 5.1166 -2.9361 13 1 6.0875 4.3784 -3.4477 14 6 4.2217 5.3721 -3.7409 15 1 3.3265 5.7259 -3.2512 16 6 4.2226 5.1539 -5.1023 17 7 3.1774 5.4956 -5.8236 18 14 5.7083 4.3731 -5.9222 19 1 5.6049 2.8946 -5.8292 20 1 5.7549 4.7772 -7.3504 21 1 6.9462 4.8268 -5.2388 22 6 6.2432 6.4014 -2.7867 23 6 5.6363 7.5128 -2.2322 24 6 6.3468 8.6901 -2.0911 25 6 7.6614 8.7588 -2.5130 26 6 8.2666 7.6490 -3.0724 27 6 7.5575 6.4705 -3.2094 28 6 3.3614 1.2634 -0.7205 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.2624 1.7788 1.9643 33 1 2.9035 1.0903 1.9487 34 1 2.9398 3.5226 2.4714 35 1 2.1400 3.8594 0.9166 36 1 4.8731 2.5567 1.3154 37 1 4.5533 4.1791 0.6499 38 1 4.3913 5.2832 -1.0791 39 1 5.9807 4.4946 -0.9376 40 1 3.1781 5.3425 -6.7814 41 1 4.6080 7.4604 -1.9063 42 1 5.8740 9.5571 -1.6537 43 1 8.2157 9.6795 -2.4054 44 1 9.2935 7.7028 -3.4024 45 1 8.0305 5.6032 -3.6461 46 1 3.9957 0.5037 -0.2638 47 1 3.2071 1.0259 -1.7732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331076300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:58 Heat of formation + Delta-G solvation = -58.873202 kcal Electronic energy + Delta-G solvation = -27266.132627 eV Core-core repulsion = 23606.659973 eV Total energy + Delta-G solvation = -3659.472654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.97040 -38.70271 -38.03392 -36.19041 -34.13876 -32.29802 -31.68003 -30.70827 -30.19831 -28.84898 -26.65325 -26.26271 -24.69812 -22.94903 -22.50782 -21.85692 -20.90502 -19.65272 -18.39957 -17.01506 -16.86461 -16.40561 -16.02114 -15.63094 -15.37279 -15.17194 -14.66929 -14.40079 -14.13709 -13.96956 -13.71813 -13.52507 -13.12500 -12.95776 -12.72219 -12.68860 -12.50813 -12.26893 -11.98632 -11.83427 -11.74402 -11.22685 -11.20098 -11.00533 -10.90881 -10.81467 -10.75691 -10.53402 -10.34240 -9.86586 -9.64544 -9.59880 -9.18856 -8.93715 -8.41036 -8.27867 -8.20079 -7.81468 -5.98083 -3.94700 2.10250 2.15096 3.11498 3.40712 3.44507 3.49011 3.54949 3.88882 4.52785 4.59270 4.66189 4.74979 4.85650 5.02589 5.14570 5.23419 5.25398 5.29631 5.41451 5.43276 5.52411 5.55368 5.55905 5.60010 5.69180 5.74793 5.75762 5.86189 5.88039 5.93194 5.99013 6.06865 6.14552 6.17750 6.24476 6.32846 6.57304 6.68277 6.77465 6.85200 7.01325 7.13955 7.14799 7.27507 7.57853 7.72588 7.82863 7.85925 8.52922 8.92469 9.00985 9.67384 11.14812 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.004205 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.862598 B = 6656.445124 C = 7855.828075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.075 3.925 4 H 0.066 0.934 5 C -0.138 4.138 6 C -0.134 4.134 7 C 0.108 3.892 8 N -0.626 5.626 9 C 0.519 3.481 10 O -0.497 6.497 11 C -0.115 4.115 12 C 0.055 3.945 13 H 0.049 0.951 14 C -0.487 4.487 15 H 0.070 0.930 16 C 0.085 3.915 17 N -0.899 5.899 18 Si 0.873 3.127 19 H -0.272 1.272 20 H -0.296 1.296 21 H -0.261 1.261 22 C -0.038 4.038 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.150 4.150 26 C -0.126 4.126 27 C -0.136 4.136 28 C 0.119 3.881 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.262 0.738 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.067 0.933 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -3.632 16.374 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.016 3.984 4 H 0.085 0.915 5 C -0.176 4.176 6 C -0.173 4.173 7 C -0.015 4.015 8 N -0.365 5.365 9 C 0.307 3.693 10 O -0.369 6.369 11 C -0.155 4.155 12 C 0.036 3.964 13 H 0.067 0.933 14 C -0.524 4.524 15 H 0.088 0.912 16 C -0.117 4.117 17 N -0.536 5.536 18 Si 0.701 3.299 19 H -0.198 1.198 20 H -0.223 1.223 21 H -0.186 1.186 22 C -0.038 4.038 23 C -0.120 4.120 24 C -0.146 4.146 25 C -0.168 4.168 26 C -0.144 4.144 27 C -0.154 4.154 28 C -0.004 4.004 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.085 0.915 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.249 -4.069 15.524 16.097 hybrid contribution 0.301 -0.090 -0.521 0.609 sum 1.550 -4.159 15.002 15.645 Atomic orbital electron populations 1.22778 0.81051 1.02542 1.00074 1.87847 1.19684 1.27642 1.95077 1.22509 0.95704 0.84580 0.95610 0.91544 1.21998 1.01463 0.97008 0.97105 1.21919 0.97421 0.96853 1.01069 1.21684 0.96651 0.99790 0.83382 1.48192 1.61865 1.19637 1.06763 1.20895 0.78181 0.87029 0.83169 1.90740 1.53701 1.67500 1.24913 1.21701 0.99470 0.93205 1.01110 1.18137 0.96551 0.89764 0.91958 0.93271 1.20559 0.95174 1.44550 0.92145 0.91182 1.24884 0.95609 0.93995 0.97203 1.69894 1.30156 1.47132 1.06461 0.86934 0.84269 0.80834 0.77874 1.19775 1.22307 1.18566 1.20730 0.92265 0.98119 0.92717 1.20948 0.99338 0.92294 0.99402 1.21046 0.94662 0.97697 1.01151 1.20859 0.95657 0.97960 1.02302 1.20963 0.99202 0.93675 1.00581 1.21154 0.94826 0.97790 1.01654 1.21277 0.91441 0.85097 1.02598 0.94248 0.93773 0.89720 0.91858 0.91077 0.90503 0.91141 0.91740 0.89146 0.89716 0.91286 0.92853 0.86336 0.87216 0.87446 0.87392 0.87024 0.91463 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.42 16 2 O -0.38 -5.02 10.35 -35.23 -0.36 -5.38 16 3 C 0.07 0.97 2.76 -26.61 -0.07 0.90 16 4 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 5 C -0.14 -1.42 5.50 -26.69 -0.15 -1.57 16 6 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 7 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 8 N -0.63 -9.65 2.97 -172.76 -0.51 -10.17 16 9 C 0.52 10.25 7.45 -10.99 -0.08 10.16 16 10 O -0.50 -12.30 14.41 5.55 0.08 -12.22 16 11 C -0.11 -2.12 3.29 -27.88 -0.09 -2.21 16 12 C 0.06 1.25 1.28 -92.93 -0.12 1.13 16 13 H 0.05 1.20 4.79 -51.93 -0.25 0.95 16 14 C -0.49 -13.33 6.94 -34.44 -0.24 -13.57 16 15 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 16 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 17 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 18 Si 0.87 22.91 27.04 -169.99 -4.60 18.31 16 19 H -0.27 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 21 H -0.26 -6.33 5.15 56.52 0.29 -6.04 16 22 C -0.04 -0.78 4.77 -104.62 -0.50 -1.28 16 23 C -0.10 -1.96 8.87 -39.58 -0.35 -2.31 16 24 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 25 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 26 C -0.13 -2.16 10.05 -39.59 -0.40 -2.55 16 27 C -0.14 -2.67 9.13 -39.59 -0.36 -3.03 16 28 C 0.12 1.78 6.08 -3.71 -0.02 1.76 16 29 H 0.04 0.34 7.85 -51.93 -0.41 -0.07 16 30 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.95 5.93 -51.93 -0.31 0.65 16 38 H 0.08 1.45 7.35 -51.93 -0.38 1.07 16 39 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 40 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 41 H 0.12 2.24 7.77 -52.49 -0.41 1.84 16 42 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.11 2.17 6.96 -52.48 -0.37 1.80 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.10 1.73 7.01 -51.93 -0.36 1.37 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -33.82 371.74 -8.99 -42.81 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.60 Total: 2.77 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -2.37 Total: -14.37 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.26 Total: -37.51 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.28 Total: -17.61 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.60 Total: 18.31 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.82 -8.99 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331076300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.066 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds