Wall clock time and date at job start Tue Mar 31 2020 12:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00388 * 2 1 4 4 H 1.09001 * 109.49524 * 329.99496 * 3 2 1 5 5 C 1.53037 * 109.50163 * 90.06007 * 3 2 1 6 6 C 1.53038 * 109.54126 * 181.28553 * 5 3 2 7 7 C 1.53188 * 109.33897 * 298.68579 * 6 5 3 8 8 N 1.46930 * 108.78073 * 54.61629 * 7 6 5 9 9 C 1.34769 * 120.63262 * 126.36970 * 8 7 6 10 10 O 1.21287 * 120.00070 * 180.02562 * 9 8 7 11 11 C 1.50704 * 120.00190 * 0.02562 * 9 8 7 12 12 C 1.52998 * 109.47107 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46925 * 305.36586 * 12 11 9 14 14 C 1.50699 * 109.47302 * 65.37387 * 12 11 9 15 15 H 1.07998 * 120.00171 * 34.61170 * 14 12 11 16 16 C 1.37879 * 119.99762 * 214.62205 * 14 12 11 17 17 N 1.31515 * 119.99797 * 186.44590 * 16 14 12 18 18 Si 1.86792 * 120.00198 * 6.44193 * 16 14 12 19 19 H 1.48500 * 109.47218 * 85.01208 * 18 16 14 20 20 H 1.48503 * 109.47330 * 205.01322 * 18 16 14 21 21 H 1.48500 * 109.47201 * 325.00848 * 18 16 14 22 22 C 1.50699 * 109.46965 * 185.37365 * 12 11 9 23 23 C 1.38237 * 119.99874 * 296.35613 * 22 12 11 24 24 C 1.38235 * 120.00056 * 179.78867 * 23 22 12 25 25 C 1.38232 * 119.99922 * 0.44151 * 24 23 22 26 26 C 1.38235 * 119.99906 * 359.81359 * 25 24 23 27 27 C 1.38226 * 120.00064 * 359.97438 * 26 25 24 28 28 C 1.46928 * 118.73307 * 306.39741 * 8 7 6 29 29 H 1.09002 * 109.47530 * 300.00624 * 1 2 3 30 30 H 1.09004 * 109.46881 * 60.00125 * 1 2 3 31 31 H 1.08999 * 109.47729 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46193 * 301.33950 * 5 3 2 33 33 H 1.08994 * 109.45918 * 61.29779 * 5 3 2 34 34 H 1.08997 * 109.50329 * 178.71507 * 6 5 3 35 35 H 1.09007 * 109.46954 * 58.63346 * 6 5 3 36 36 H 1.09004 * 109.58982 * 294.83112 * 7 6 5 37 37 H 1.08998 * 109.59154 * 174.40700 * 7 6 5 38 38 H 1.09001 * 109.47330 * 300.00350 * 11 9 8 39 39 H 1.08999 * 109.46927 * 60.00318 * 11 9 8 40 40 H 0.96996 * 119.99876 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00030 * 359.97438 * 23 22 12 42 42 H 1.08007 * 119.99947 * 180.27684 * 24 23 22 43 43 H 1.08005 * 120.00106 * 179.83011 * 25 24 23 44 44 H 1.07996 * 119.99738 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00075 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.58514 * 293.81220 * 28 8 7 47 47 H 1.09007 * 109.69798 * 173.46340 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3454 1.9997 -0.5138 5 6 2.2195 1.7715 1.4426 6 6 2.8123 3.1824 1.4438 7 6 4.1726 3.1617 0.7396 8 7 4.0036 2.5793 -0.5988 9 6 4.4289 3.2399 -1.6938 10 8 4.2831 2.7487 -2.7931 11 6 5.0856 4.5889 -1.5524 12 6 5.4700 5.1166 -2.9361 13 1 6.0875 4.3784 -3.4477 14 6 4.2217 5.3721 -3.7409 15 1 3.3265 5.7259 -3.2512 16 6 4.2226 5.1539 -5.1023 17 7 3.1774 5.4956 -5.8236 18 14 5.7083 4.3731 -5.9222 19 1 5.6049 2.8946 -5.8292 20 1 5.7549 4.7772 -7.3504 21 1 6.9462 4.8268 -5.2388 22 6 6.2432 6.4014 -2.7867 23 6 5.6363 7.5128 -2.2322 24 6 6.3468 8.6901 -2.0911 25 6 7.6614 8.7588 -2.5130 26 6 8.2666 7.6490 -3.0724 27 6 7.5575 6.4705 -3.2094 28 6 3.3614 1.2634 -0.7205 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.2624 1.7788 1.9643 33 1 2.9035 1.0903 1.9487 34 1 2.9398 3.5226 2.4714 35 1 2.1400 3.8594 0.9166 36 1 4.8731 2.5567 1.3154 37 1 4.5533 4.1791 0.6499 38 1 4.3913 5.2832 -1.0791 39 1 5.9807 4.4946 -0.9376 40 1 3.1781 5.3425 -6.7814 41 1 4.6080 7.4604 -1.9063 42 1 5.8740 9.5571 -1.6537 43 1 8.2157 9.6795 -2.4054 44 1 9.2935 7.7028 -3.4024 45 1 8.0305 5.6032 -3.6461 46 1 3.9957 0.5037 -0.2638 47 1 3.2071 1.0259 -1.7732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331076300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:57 Heat of formation + Delta-G solvation = -80.198066 kcal Electronic energy + Delta-G solvation = -27267.057342 eV Core-core repulsion = 23606.659973 eV Total energy + Delta-G solvation = -3660.397369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.28885 -40.06606 -39.29266 -37.37357 -35.88424 -33.80767 -33.35243 -31.83401 -31.57442 -30.23714 -28.05762 -27.46690 -26.05733 -24.28505 -23.77979 -23.26134 -22.04894 -21.12954 -19.74443 -19.03518 -18.30534 -17.51094 -17.25373 -16.94401 -16.56231 -16.41083 -16.18700 -15.74090 -15.66769 -15.34640 -14.94903 -14.77120 -14.55326 -14.31032 -14.08902 -14.04460 -13.85408 -13.66504 -13.49924 -13.23729 -12.89248 -12.84722 -12.72595 -12.22392 -12.09685 -11.97501 -11.91798 -11.89556 -11.81180 -11.73714 -11.46132 -11.07934 -10.67927 -10.60739 -10.50702 -9.60290 -9.56217 -9.29100 -8.23989 -6.19337 0.70160 0.74777 1.28801 1.37543 1.39667 1.80348 1.99508 2.40073 2.88415 3.08503 3.24228 3.63265 3.77739 3.96527 3.97863 4.10068 4.12929 4.19785 4.30261 4.32805 4.43591 4.44768 4.45950 4.49298 4.53304 4.60016 4.64517 4.75136 4.79426 4.81018 4.87094 4.87272 4.94175 4.98429 5.07463 5.16625 5.20141 5.33073 5.38602 5.41876 5.60195 5.68538 5.78723 5.84024 6.03500 6.15730 6.32529 6.37072 6.52009 6.79376 7.42871 7.44755 8.93009 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.004205 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.862598 B = 6656.445124 C = 7855.828075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.079 3.921 4 H 0.045 0.955 5 C -0.130 4.130 6 C -0.129 4.129 7 C 0.098 3.902 8 N -0.617 5.617 9 C 0.511 3.489 10 O -0.563 6.563 11 C -0.106 4.106 12 C 0.056 3.944 13 H 0.030 0.970 14 C -0.462 4.462 15 H 0.035 0.965 16 C 0.023 3.977 17 N -0.953 5.953 18 Si 0.920 3.080 19 H -0.290 1.290 20 H -0.297 1.297 21 H -0.230 1.230 22 C -0.062 4.062 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.124 4.124 27 C -0.154 4.154 28 C 0.117 3.883 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.258 0.742 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -2.225 19.933 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C 0.020 3.980 4 H 0.063 0.937 5 C -0.168 4.168 6 C -0.167 4.167 7 C -0.023 4.023 8 N -0.354 5.354 9 C 0.300 3.700 10 O -0.440 6.440 11 C -0.146 4.146 12 C 0.036 3.964 13 H 0.048 0.952 14 C -0.500 4.500 15 H 0.053 0.947 16 C -0.173 4.173 17 N -0.595 5.595 18 Si 0.748 3.252 19 H -0.217 1.217 20 H -0.224 1.224 21 H -0.153 1.153 22 C -0.062 4.062 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.158 4.158 26 C -0.142 4.142 27 C -0.172 4.172 28 C -0.006 4.006 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.128 0.872 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.157 0.843 45 H 0.125 0.875 46 H 0.103 0.897 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.554 -2.652 19.174 19.680 hybrid contribution -0.430 -0.505 -1.451 1.596 sum 3.124 -3.158 17.723 18.271 Atomic orbital electron populations 1.22966 0.79487 1.03993 1.00484 1.87809 1.21397 1.27543 1.95266 1.22414 0.93881 0.84400 0.97304 0.93725 1.21958 1.02725 0.97381 0.94692 1.21920 0.95911 0.96229 1.02640 1.22102 0.98473 1.00611 0.81130 1.48197 1.60189 1.19361 1.07615 1.21217 0.77971 0.87500 0.83280 1.90716 1.56627 1.69095 1.27588 1.21604 1.01209 0.92496 0.99315 1.18021 0.94203 0.90846 0.93304 0.95166 1.20786 0.95943 1.41295 0.91946 0.94719 1.25590 0.97888 0.95430 0.98375 1.70030 1.32444 1.50538 1.06455 0.86161 0.83178 0.78793 0.77117 1.21701 1.22450 1.15269 1.20447 0.93216 0.97213 0.95343 1.20997 0.99314 0.93091 1.00185 1.21397 0.95064 0.97515 1.00226 1.21337 0.95347 0.99011 1.00066 1.21323 1.00496 0.92755 0.99620 1.21250 0.94654 0.99049 1.02241 1.21293 0.93284 0.85299 1.00768 0.92393 0.94807 0.87813 0.90304 0.89839 0.86880 0.92677 0.88932 0.88181 0.88437 0.87545 0.93350 0.87178 0.84225 0.83582 0.84310 0.87475 0.89739 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.82 113.37 1.23 1.75 16 2 O -0.40 -10.38 10.35 -148.98 -1.54 -11.92 16 3 C 0.08 2.04 2.76 30.67 0.08 2.13 16 4 H 0.04 1.33 7.79 -2.39 -0.02 1.31 16 5 C -0.13 -2.34 5.50 30.62 0.17 -2.17 16 6 C -0.13 -2.13 6.08 30.67 0.19 -1.94 16 7 C 0.10 1.93 6.34 86.36 0.55 2.48 16 8 N -0.62 -18.96 2.97 -818.89 -2.43 -21.39 16 9 C 0.51 20.77 7.45 87.66 0.65 21.43 16 10 O -0.56 -29.70 14.41 -3.05 -0.04 -29.74 16 11 C -0.11 -3.90 3.29 29.85 0.10 -3.80 16 12 C 0.06 2.56 1.28 -12.29 -0.02 2.55 16 13 H 0.03 1.50 4.79 -2.39 -0.01 1.49 16 14 C -0.46 -26.47 6.94 25.60 0.18 -26.29 16 15 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 16 C 0.02 1.44 5.47 84.65 0.46 1.90 16 17 N -0.95 -63.14 13.96 21.45 0.30 -62.85 16 18 Si 0.92 49.30 27.04 68.60 1.85 51.15 16 19 H -0.29 -16.24 7.11 99.48 0.71 -15.53 16 20 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16 21 H -0.23 -10.96 5.15 99.48 0.51 -10.44 16 22 C -0.06 -2.51 4.77 -19.87 -0.09 -2.61 16 23 C -0.12 -4.36 8.87 22.27 0.20 -4.16 16 24 C -0.12 -3.74 10.05 22.27 0.22 -3.51 16 25 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 26 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 27 C -0.15 -5.72 9.13 22.27 0.20 -5.51 16 28 C 0.12 3.59 6.08 86.36 0.53 4.12 16 29 H 0.06 0.91 7.85 -2.39 -0.02 0.89 16 30 H 0.03 0.71 8.09 -2.39 -0.02 0.69 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.22 7.85 -2.38 -0.02 1.20 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.80 5.93 -2.39 -0.01 1.79 16 38 H 0.10 3.30 7.35 -2.39 -0.02 3.28 16 39 H 0.11 3.09 7.94 -2.39 -0.02 3.07 16 40 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 41 H 0.11 4.15 7.77 -2.91 -0.02 4.13 16 42 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 43 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.11 3.99 6.96 -2.91 -0.02 3.97 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.06 2.22 7.01 -2.38 -0.02 2.20 16 Total: -1.00 -80.56 371.74 3.97 -76.59 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.75 Total: 18.95 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 5.09 Total: -20.79 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.13 Total: -84.24 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.59 Total: -41.66 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.85 Total: 51.15 kcal Total: -80.56 3.97 -76.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331076300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.610 kcal (2) G-P(sol) polarization free energy of solvation -80.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds