Wall clock time and date at job start Tue Mar 31 2020 12:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35908 * 117.00264 * 2 1 4 4 C 1.38749 * 120.05091 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94170 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05739 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.11003 * 359.96386 * 6 5 4 8 8 C 1.38168 * 120.05247 * 359.75645 * 7 6 5 9 9 C 1.50698 * 120.02597 * 180.25948 * 8 7 6 10 10 C 1.50693 * 109.47293 * 124.05845 * 9 8 7 11 11 O 1.21286 * 120.00119 * 113.00745 * 10 9 8 12 12 N 1.34776 * 120.00279 * 293.00964 * 10 9 8 13 13 C 1.46500 * 120.00248 * 185.00980 * 12 10 9 14 14 C 1.50703 * 109.47057 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99704 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99864 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47504 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47108 * 119.99744 * 18 16 14 21 21 H 1.48506 * 109.47297 * 239.99858 * 18 16 14 22 22 C 1.52999 * 109.47278 * 4.05444 * 9 8 7 23 23 C 1.52998 * 109.47403 * 179.97438 * 22 9 8 24 24 C 1.53003 * 109.46982 * 60.00130 * 23 22 9 25 25 C 1.52997 * 109.47538 * 300.00416 * 24 23 22 26 26 C 1.53000 * 109.47056 * 59.99313 * 25 24 23 27 27 H 1.09002 * 109.47263 * 300.00684 * 1 2 3 28 28 H 1.09003 * 109.47092 * 60.00304 * 1 2 3 29 29 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.03349 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.97143 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.95075 * 179.97438 * 6 5 4 33 33 H 1.07996 * 119.96967 * 180.02562 * 7 6 5 34 34 H 0.96996 * 119.99644 * 5.00927 * 12 10 9 35 35 H 1.08996 * 109.46923 * 299.99891 * 13 12 10 36 36 H 1.08998 * 109.47072 * 60.00163 * 13 12 10 37 37 H 0.96998 * 120.00006 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.47448 * 300.00307 * 22 9 8 39 39 H 1.09001 * 109.46614 * 60.00290 * 22 9 8 40 40 H 1.08999 * 109.47145 * 300.00585 * 23 22 9 41 41 H 1.08998 * 109.47485 * 179.97438 * 23 22 9 42 42 H 1.09001 * 109.47068 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.46809 * 60.00250 * 24 23 22 44 44 H 1.08999 * 109.46935 * 299.99757 * 25 24 23 45 45 H 1.08993 * 109.47783 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.47015 * 180.02562 * 26 25 24 47 47 H 1.09006 * 109.47113 * 60.00769 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6758 -0.0016 7 6 4.0561 2.5171 -0.0009 8 6 3.4311 1.2848 0.0055 9 6 4.2537 0.0222 0.0122 10 6 3.8611 -0.8269 1.1937 11 8 3.3076 -1.8917 1.0180 12 7 4.1250 -0.4031 2.4456 13 6 3.8438 -1.2751 3.5887 14 6 4.2267 -0.5701 4.8644 15 1 4.6387 0.4276 4.8273 16 6 4.0520 -1.1991 6.0788 17 7 3.5507 -2.4141 6.1240 18 14 4.5259 -0.3249 7.6602 19 1 5.0620 1.0223 7.3396 20 1 3.3287 -0.1881 8.5280 21 1 5.5644 -1.1142 8.3701 22 6 5.7377 0.3807 0.1126 23 6 6.5728 -0.9012 0.1200 24 6 6.3227 -1.6803 -1.1728 25 6 4.8388 -2.0389 -1.2733 26 6 4.0037 -0.7569 -1.2806 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2128 2.3204 -0.0014 31 1 1.3341 4.5113 -0.0011 32 1 3.7924 4.6380 -0.0024 33 1 5.1345 2.5752 -0.0009 34 1 4.5011 0.4793 2.5896 35 1 2.7806 -1.5142 3.6103 36 1 4.4213 -2.1947 3.4949 37 1 3.4275 -2.8564 6.9784 38 1 6.0217 0.9949 -0.7420 39 1 5.9159 0.9354 1.0338 40 1 6.2887 -1.5149 0.9748 41 1 7.6301 -0.6457 0.1910 42 1 6.9180 -2.5934 -1.1677 43 1 6.6069 -1.0666 -2.0276 44 1 4.5546 -2.6527 -0.4185 45 1 4.6605 -2.5935 -2.1944 46 1 2.9464 -1.0124 -1.3517 47 1 4.2878 -0.1431 -2.1355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351587938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:10 Heat of formation + Delta-G solvation = -67.739759 kcal Electronic energy + Delta-G solvation = -28430.873525 eV Core-core repulsion = 24771.016389 eV Total energy + Delta-G solvation = -3659.857136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.93643 -39.13778 -37.30222 -36.53243 -34.09232 -32.90552 -32.11888 -30.60457 -29.88157 -28.85476 -27.17748 -26.98433 -23.98770 -22.95202 -22.60536 -21.37251 -21.13625 -20.27997 -18.73290 -17.97136 -16.76071 -16.06401 -15.98522 -15.58008 -15.33862 -15.11000 -14.65704 -14.49002 -14.24347 -14.07430 -13.61204 -13.52461 -13.38547 -12.97220 -12.70056 -12.40500 -12.09261 -11.95588 -11.91064 -11.74965 -11.65080 -11.49012 -11.39513 -11.00095 -10.91445 -10.89267 -10.87044 -10.65660 -10.31107 -10.21309 -9.95182 -9.78106 -9.30475 -9.00256 -8.65827 -8.54966 -7.96565 -7.67484 -6.11690 -4.17382 1.35794 1.53021 3.25584 3.32757 3.36085 3.45113 3.59685 3.80339 4.23393 4.44120 4.68659 4.83943 4.97363 4.98137 5.08443 5.15259 5.24496 5.24770 5.28688 5.37591 5.45348 5.50153 5.56109 5.64121 5.66848 5.69329 5.76096 5.77933 5.86974 5.96470 6.09420 6.15323 6.24794 6.31499 6.43633 6.46069 6.48233 6.53192 6.57919 6.69495 6.86332 6.88664 7.41516 7.55583 7.61976 7.62272 7.77467 8.05000 8.78647 8.89467 9.30205 9.50494 10.98622 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.005109 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.069965 B = 5479.532501 C = 6357.997170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.291 6.291 3 C 0.141 3.859 4 C -0.211 4.211 5 C -0.084 4.084 6 C -0.160 4.160 7 C -0.080 4.080 8 C -0.103 4.103 9 C -0.027 4.027 10 C 0.524 3.476 11 O -0.540 6.540 12 N -0.713 5.713 13 C 0.254 3.746 14 C -0.538 4.538 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.085 4.085 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.386 0.614 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.264 0.736 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 10.098 -16.183 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.203 6.203 3 C 0.095 3.905 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.178 4.178 7 C -0.098 4.098 8 C -0.104 4.104 9 C -0.030 4.030 10 C 0.309 3.691 11 O -0.418 6.418 12 N -0.361 5.361 13 C 0.133 3.867 14 C -0.576 4.576 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.524 5.524 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.145 4.145 23 C -0.161 4.161 24 C -0.154 4.154 25 C -0.167 4.167 26 C -0.122 4.122 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.219 0.781 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.536 8.943 -16.138 18.458 hybrid contribution 0.027 1.110 1.134 1.587 sum -0.509 10.053 -15.004 18.068 Atomic orbital electron populations 1.23037 0.78985 1.04037 1.00642 1.86330 1.20749 1.25632 1.87625 1.18942 0.91811 0.84775 0.94978 1.21202 0.99931 0.92385 1.09434 1.20886 0.94734 0.96749 0.97835 1.20979 0.93855 0.98177 1.04834 1.21003 1.00255 0.90791 0.97759 1.19019 0.90355 0.94709 1.06364 1.19655 0.94644 0.92450 0.96268 1.19871 0.79028 0.86370 0.83880 1.90571 1.42116 1.23696 1.85417 1.46383 1.63563 1.19667 1.06503 1.19010 0.96708 0.89643 0.81344 1.21285 1.43567 1.01913 0.90876 0.92032 1.24932 0.94940 0.94878 0.99241 1.69985 1.43855 1.12611 1.25974 0.86416 0.78221 0.79639 0.82979 1.19650 1.20863 1.20819 1.21687 0.92597 0.98106 1.02155 1.21567 0.99179 0.96534 0.98812 1.21535 0.97060 0.99541 0.97280 1.21726 0.93959 0.97959 1.03057 1.21301 1.01600 0.95561 0.93771 0.92810 0.93170 0.88221 0.85644 0.86160 0.86056 0.84885 0.78128 0.95833 0.95870 0.92632 0.91134 0.91235 0.91200 0.91900 0.92391 0.92643 0.89175 0.92703 0.90364 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.29 -4.89 6.95 -26.36 -0.18 -5.07 16 3 C 0.14 2.20 6.28 -39.22 -0.25 1.96 16 4 C -0.21 -2.77 9.04 -39.43 -0.36 -3.13 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 6 C -0.16 -1.83 10.04 -39.56 -0.40 -2.23 16 7 C -0.08 -1.01 8.98 -39.60 -0.36 -1.37 16 8 C -0.10 -1.56 4.74 -104.48 -0.50 -2.06 16 9 C -0.03 -0.43 0.38 -156.82 -0.06 -0.49 16 10 C 0.52 10.82 3.61 -10.99 -0.04 10.78 16 11 O -0.54 -12.95 13.48 -1.36 -0.02 -12.97 16 12 N -0.71 -15.78 5.34 -61.48 -0.33 -16.11 16 13 C 0.25 6.89 5.43 -5.19 -0.03 6.87 16 14 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 15 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 18 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.11 -1.46 3.24 -26.73 -0.09 -1.54 16 23 C -0.12 -1.74 5.70 -26.73 -0.15 -1.89 16 24 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 25 C -0.13 -1.97 5.63 -26.73 -0.15 -2.12 16 26 C -0.08 -1.29 4.17 -26.73 -0.11 -1.41 16 27 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 28 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.13 1.40 6.30 -52.48 -0.33 1.07 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.40 5.90 -52.49 -0.31 1.09 16 34 H 0.39 7.79 7.48 -40.82 -0.31 7.49 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.79 7.32 -51.93 -0.38 0.41 16 39 H 0.07 0.92 6.87 -51.93 -0.36 0.57 16 40 H 0.07 1.21 7.22 -51.93 -0.37 0.84 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.69 5.77 -51.93 -0.30 1.39 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.33 6.33 -51.93 -0.33 1.00 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -32.74 363.35 -9.04 -41.78 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.24 Total: 8.34 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.46 Total: -11.91 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.41 Total: -41.85 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.20 Total: -18.04 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.74 -9.04 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351587938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.955 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds