Wall clock time and date at job start Tue Mar 31 2020 12:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35908 * 117.00264 * 2 1 4 4 C 1.38749 * 120.05091 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94170 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05739 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.11003 * 359.96386 * 6 5 4 8 8 C 1.38168 * 120.05247 * 359.75645 * 7 6 5 9 9 C 1.50698 * 120.02597 * 180.25948 * 8 7 6 10 10 C 1.50693 * 109.47293 * 124.05845 * 9 8 7 11 11 O 1.21286 * 120.00119 * 113.00745 * 10 9 8 12 12 N 1.34776 * 120.00279 * 293.00964 * 10 9 8 13 13 C 1.46500 * 120.00248 * 185.00980 * 12 10 9 14 14 C 1.50703 * 109.47057 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99704 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99864 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47504 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47108 * 119.99744 * 18 16 14 21 21 H 1.48506 * 109.47297 * 239.99858 * 18 16 14 22 22 C 1.52999 * 109.47278 * 4.05444 * 9 8 7 23 23 C 1.52998 * 109.47403 * 179.97438 * 22 9 8 24 24 C 1.53003 * 109.46982 * 60.00130 * 23 22 9 25 25 C 1.52997 * 109.47538 * 300.00416 * 24 23 22 26 26 C 1.53000 * 109.47056 * 59.99313 * 25 24 23 27 27 H 1.09002 * 109.47263 * 300.00684 * 1 2 3 28 28 H 1.09003 * 109.47092 * 60.00304 * 1 2 3 29 29 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.03349 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.97143 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.95075 * 179.97438 * 6 5 4 33 33 H 1.07996 * 119.96967 * 180.02562 * 7 6 5 34 34 H 0.96996 * 119.99644 * 5.00927 * 12 10 9 35 35 H 1.08996 * 109.46923 * 299.99891 * 13 12 10 36 36 H 1.08998 * 109.47072 * 60.00163 * 13 12 10 37 37 H 0.96998 * 120.00006 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.47448 * 300.00307 * 22 9 8 39 39 H 1.09001 * 109.46614 * 60.00290 * 22 9 8 40 40 H 1.08999 * 109.47145 * 300.00585 * 23 22 9 41 41 H 1.08998 * 109.47485 * 179.97438 * 23 22 9 42 42 H 1.09001 * 109.47068 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.46809 * 60.00250 * 24 23 22 44 44 H 1.08999 * 109.46935 * 299.99757 * 25 24 23 45 45 H 1.08993 * 109.47783 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.47015 * 180.02562 * 26 25 24 47 47 H 1.09006 * 109.47113 * 60.00769 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6758 -0.0016 7 6 4.0561 2.5171 -0.0009 8 6 3.4311 1.2848 0.0055 9 6 4.2537 0.0222 0.0122 10 6 3.8611 -0.8269 1.1937 11 8 3.3076 -1.8917 1.0180 12 7 4.1250 -0.4031 2.4456 13 6 3.8438 -1.2751 3.5887 14 6 4.2267 -0.5701 4.8644 15 1 4.6387 0.4276 4.8273 16 6 4.0520 -1.1991 6.0788 17 7 3.5507 -2.4141 6.1240 18 14 4.5259 -0.3249 7.6602 19 1 5.0620 1.0223 7.3396 20 1 3.3287 -0.1881 8.5280 21 1 5.5644 -1.1142 8.3701 22 6 5.7377 0.3807 0.1126 23 6 6.5728 -0.9012 0.1200 24 6 6.3227 -1.6803 -1.1728 25 6 4.8388 -2.0389 -1.2733 26 6 4.0037 -0.7569 -1.2806 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2128 2.3204 -0.0014 31 1 1.3341 4.5113 -0.0011 32 1 3.7924 4.6380 -0.0024 33 1 5.1345 2.5752 -0.0009 34 1 4.5011 0.4793 2.5896 35 1 2.7806 -1.5142 3.6103 36 1 4.4213 -2.1947 3.4949 37 1 3.4275 -2.8564 6.9784 38 1 6.0217 0.9949 -0.7420 39 1 5.9159 0.9354 1.0338 40 1 6.2887 -1.5149 0.9748 41 1 7.6301 -0.6457 0.1910 42 1 6.9180 -2.5934 -1.1677 43 1 6.6069 -1.0666 -2.0276 44 1 4.5546 -2.6527 -0.4185 45 1 4.6605 -2.5935 -2.1944 46 1 2.9464 -1.0124 -1.3517 47 1 4.2878 -0.1431 -2.1355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351587938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:09 Heat of formation + Delta-G solvation = -88.033707 kcal Electronic energy + Delta-G solvation = -28431.753537 eV Core-core repulsion = 24771.016389 eV Total energy + Delta-G solvation = -3660.737148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.17086 -40.40280 -38.51312 -37.83859 -36.07917 -34.47747 -33.71877 -31.77053 -30.91127 -30.00324 -29.11285 -28.06457 -25.49557 -24.43597 -23.83472 -22.67668 -22.32464 -21.56379 -20.38674 -19.02404 -18.51011 -17.48983 -17.22484 -16.96716 -16.68639 -16.61162 -16.15184 -15.74786 -15.55075 -15.32688 -14.95275 -14.73751 -14.63950 -14.51789 -14.04790 -13.86795 -13.64618 -13.36176 -13.15610 -12.96916 -12.94882 -12.82021 -12.76326 -12.71195 -12.42231 -12.23359 -12.02421 -11.95309 -11.71875 -11.53969 -11.45874 -11.06360 -10.91781 -10.80634 -10.43217 -9.74285 -9.66685 -9.01768 -8.29967 -6.46500 0.38558 0.55608 1.40075 1.41671 1.55245 1.97619 2.32479 2.46069 2.64789 2.89005 3.04375 3.57513 3.75670 3.81460 4.00284 4.06368 4.13511 4.24021 4.28609 4.31220 4.33418 4.44073 4.50964 4.54720 4.59565 4.64555 4.67167 4.74360 4.79117 4.91657 5.00647 5.10750 5.11967 5.14734 5.23984 5.26482 5.32312 5.35167 5.42518 5.50608 5.50797 5.55487 5.63114 5.68427 5.77820 5.88553 5.95405 6.53108 6.65475 7.03312 7.23405 7.64194 8.82583 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.005109 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.069965 B = 5479.532501 C = 6357.997170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.328 6.328 3 C 0.110 3.890 4 C -0.220 4.220 5 C -0.082 4.082 6 C -0.156 4.156 7 C -0.078 4.078 8 C -0.129 4.129 9 C -0.014 4.014 10 C 0.524 3.476 11 O -0.582 6.582 12 N -0.711 5.711 13 C 0.276 3.724 14 C -0.552 4.552 15 H 0.079 0.921 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.983 3.017 19 H -0.253 1.253 20 H -0.278 1.278 21 H -0.276 1.276 22 C -0.106 4.106 23 C -0.125 4.125 24 C -0.111 4.111 25 C -0.131 4.131 26 C -0.081 4.081 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.398 0.602 35 H -0.023 1.023 36 H -0.017 1.017 37 H 0.268 0.732 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.023 0.977 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 14.317 -17.051 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.242 6.242 3 C 0.065 3.935 4 C -0.239 4.239 5 C -0.100 4.100 6 C -0.174 4.174 7 C -0.096 4.096 8 C -0.130 4.130 9 C -0.017 4.017 10 C 0.311 3.689 11 O -0.463 6.463 12 N -0.360 5.360 13 C 0.153 3.847 14 C -0.590 4.590 15 H 0.097 0.903 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.806 3.194 19 H -0.176 1.176 20 H -0.204 1.204 21 H -0.202 1.202 22 C -0.143 4.143 23 C -0.163 4.163 24 C -0.148 4.148 25 C -0.168 4.168 26 C -0.119 4.119 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.156 0.844 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.233 0.767 35 H -0.005 1.005 36 H 0.001 0.999 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.267 13.197 -17.042 21.592 hybrid contribution -0.620 -0.237 1.341 1.496 sum 0.647 12.960 -15.701 20.369 Atomic orbital electron populations 1.23177 0.77707 1.04346 1.01901 1.86277 1.22456 1.27217 1.88218 1.19333 0.92571 0.85049 0.96572 1.21459 1.00707 0.92359 1.09352 1.21322 0.95454 0.97065 0.96152 1.21413 0.93820 0.99162 1.03010 1.21317 1.01632 0.89971 0.96643 1.19121 0.90224 0.95029 1.08627 1.19542 0.96660 0.92186 0.93324 1.20870 0.77280 0.86200 0.84529 1.90550 1.43696 1.25945 1.86067 1.46137 1.64319 1.19560 1.06010 1.18379 0.93036 0.89360 0.83876 1.21617 1.43741 1.02622 0.91029 0.90287 1.26060 0.94385 0.95526 1.03536 1.70151 1.44921 1.14642 1.27303 0.85143 0.77963 0.78948 0.77382 1.17642 1.20383 1.20168 1.21774 0.90224 0.98208 1.04100 1.21592 1.00842 0.96364 0.97474 1.21520 0.95100 1.00243 0.97954 1.21680 0.95883 0.97636 1.01623 1.21284 1.00120 0.95862 0.94605 0.92882 0.90417 0.88538 0.84430 0.83177 0.82729 0.82413 0.76722 1.00500 0.99946 0.92292 0.87126 0.90877 0.95854 0.89237 0.92096 0.89302 0.93945 0.91289 0.92961 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.73 16 2 O -0.33 -11.66 6.95 -85.90 -0.60 -12.26 16 3 C 0.11 3.43 6.28 22.50 0.14 3.58 16 4 C -0.22 -5.47 9.04 22.36 0.20 -5.26 16 5 C -0.08 -1.62 10.04 22.25 0.22 -1.40 16 6 C -0.16 -2.89 10.04 22.28 0.22 -2.66 16 7 C -0.08 -1.69 8.98 22.26 0.20 -1.49 16 8 C -0.13 -3.74 4.74 -19.77 -0.09 -3.83 16 9 C -0.01 -0.44 0.38 -53.68 -0.02 -0.46 16 10 C 0.52 22.96 3.61 87.65 0.32 23.28 16 11 O -0.58 -30.65 13.48 3.57 0.05 -30.60 16 12 N -0.71 -33.19 5.34 -466.80 -2.49 -35.68 16 13 C 0.28 16.14 5.43 85.63 0.47 16.61 16 14 C -0.55 -31.50 9.28 25.60 0.24 -31.27 16 15 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 16 C 0.00 0.24 5.46 84.66 0.46 0.71 16 17 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 18 Si 0.98 43.55 29.54 68.60 2.03 45.57 16 19 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 C -0.11 -2.61 3.24 30.59 0.10 -2.51 16 23 C -0.13 -3.39 5.70 30.59 0.17 -3.22 16 24 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 25 C -0.13 -4.06 5.63 30.59 0.17 -3.89 16 26 C -0.08 -2.47 4.17 30.60 0.13 -2.35 16 27 H 0.05 1.36 7.66 -2.39 -0.02 1.34 16 28 H 0.08 1.56 7.66 -2.39 -0.02 1.54 16 29 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.14 2.90 6.30 -2.91 -0.02 2.89 16 31 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.16 2.52 5.90 -2.91 -0.02 2.51 16 34 H 0.40 16.37 7.48 -92.71 -0.69 15.67 16 35 H -0.02 -1.52 8.14 -2.39 -0.02 -1.54 16 36 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 37 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.11 1.91 7.32 -2.39 -0.02 1.89 16 39 H 0.07 1.76 6.87 -2.39 -0.02 1.74 16 40 H 0.02 0.83 7.22 -2.39 -0.02 0.82 16 41 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.04 1.73 5.77 -2.39 -0.01 1.71 16 45 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.05 1.87 6.33 -2.38 -0.02 1.85 16 47 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -78.30 363.35 3.78 -74.52 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.28 Total: 31.07 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.22 Total: -14.99 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -2.21 Total: -93.31 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.55 Total: -42.86 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -78.30 3.78 -74.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351587938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.510 kcal (2) G-P(sol) polarization free energy of solvation -78.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds