Wall clock time and date at job start Tue Mar 31 2020 12:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99887 * 2 1 4 4 N 1.46500 * 109.46814 * 124.99757 * 3 2 1 5 5 C 1.46506 * 120.00283 * 270.00045 * 4 3 2 6 6 C 1.52999 * 109.47029 * 270.00555 * 5 4 3 7 7 O 1.42899 * 109.47565 * 64.99398 * 6 5 4 8 8 C 1.42898 * 114.00148 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00010 * 90.00475 * 4 3 2 10 10 O 1.21284 * 120.00085 * 180.02562 * 9 4 3 11 11 C 1.50706 * 119.99984 * 359.97438 * 9 4 3 12 12 C 1.52994 * 109.46995 * 180.02562 * 11 9 4 13 13 H 1.08997 * 109.47639 * 54.05331 * 12 11 9 14 14 C 1.50698 * 109.46998 * 294.05407 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08382 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08385 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48505 * 109.47142 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.08003 * 119.99709 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99933 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99933 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46779 * 5.00378 * 3 2 1 32 32 H 1.08993 * 109.46935 * 244.99837 * 3 2 1 33 33 H 1.09004 * 109.46669 * 29.99915 * 5 4 3 34 34 H 1.08996 * 109.47063 * 149.99789 * 5 4 3 35 35 H 1.08999 * 109.47063 * 185.00177 * 6 5 4 36 36 H 1.09004 * 109.47017 * 304.99511 * 6 5 4 37 37 H 1.08999 * 109.47250 * 300.00130 * 8 7 6 38 38 H 1.09001 * 109.46923 * 60.00790 * 8 7 6 39 39 H 1.09002 * 109.47165 * 180.02562 * 8 7 6 40 40 H 1.08997 * 109.46866 * 60.00030 * 11 9 4 41 41 H 1.09004 * 109.46662 * 299.99914 * 11 9 4 42 42 H 0.96997 * 120.00185 * 354.72930 * 17 16 14 43 43 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 44 44 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 45 45 H 1.08006 * 119.99774 * 179.83158 * 25 24 23 46 46 H 1.07995 * 119.99599 * 179.97438 * 26 25 24 47 47 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8649 2.4250 6 6 2.8485 3.3662 2.4813 7 8 2.0516 4.0421 1.5066 8 6 2.2466 5.4574 1.4764 9 6 4.2497 0.8663 0.9825 10 8 5.0196 0.8880 1.9193 11 6 4.6970 0.3175 -0.3479 12 6 6.1531 -0.1410 -0.2469 13 1 6.2574 -0.8395 0.5833 14 6 7.0409 1.0540 -0.0124 15 1 6.7585 2.0212 -0.4013 16 6 8.2136 0.9126 0.6986 17 7 8.6228 -0.2836 1.0609 18 14 9.2215 2.4201 1.1472 19 1 10.4280 2.0013 1.9052 20 1 9.6362 3.1251 -0.0922 21 1 8.4019 3.3321 1.9849 22 6 6.5556 -0.8217 -1.5297 23 6 6.5911 -0.1047 -2.7110 24 6 6.9640 -0.7281 -3.8870 25 6 7.2936 -2.0707 -3.8832 26 6 7.2529 -2.7890 -2.7028 27 6 6.8837 -2.1645 -1.5262 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9313 33 1 1.4886 1.6966 2.5459 34 1 3.0988 1.3603 3.2260 35 1 2.6074 3.7457 3.4743 36 1 3.9039 3.5407 2.2721 37 1 1.9927 5.8800 2.4486 38 1 3.2895 5.6756 1.2465 39 1 1.6061 5.8962 0.7114 40 1 4.6120 1.0939 -1.1082 41 1 4.0678 -0.5295 -0.6216 42 1 8.0632 -1.0584 0.8956 43 1 6.3301 0.9433 -2.7147 44 1 6.9954 -0.1670 -4.8094 45 1 7.5823 -2.5584 -4.8026 46 1 7.5099 -3.8379 -2.7000 47 1 6.8523 -2.7256 -0.6039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357046861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:35 Heat of formation + Delta-G solvation = -38.568893 kcal Electronic energy + Delta-G solvation = -27286.181814 eV Core-core repulsion = 23627.589621 eV Total energy + Delta-G solvation = -3658.592193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.59871 -38.43238 -37.61982 -35.82662 -34.32051 -33.03639 -31.40420 -30.21887 -30.08443 -28.55988 -26.53299 -25.67569 -24.92667 -23.21538 -22.22084 -21.61986 -20.29635 -19.82702 -18.45281 -16.91379 -16.67841 -16.40793 -16.10753 -15.63476 -15.59368 -15.10397 -14.68287 -14.37560 -14.08158 -14.02701 -13.65783 -13.30754 -13.14572 -12.76204 -12.50958 -12.34165 -12.26162 -12.03119 -11.91524 -11.79855 -11.73280 -11.43893 -11.27273 -11.07804 -10.85037 -10.70387 -10.41456 -10.12250 -10.04061 -9.71135 -9.63897 -9.41611 -8.95754 -8.61434 -8.28641 -8.22695 -8.12460 -7.61613 -6.21799 -3.88987 2.18576 2.20669 2.27079 3.42775 3.49539 3.51664 3.54597 3.70290 3.84239 4.61599 4.68126 4.92443 5.06546 5.17993 5.20368 5.26243 5.38419 5.41016 5.43960 5.48073 5.58548 5.60834 5.62574 5.64869 5.77066 5.78535 5.89652 5.95861 5.97703 6.04560 6.13608 6.18695 6.33292 6.44188 6.57357 6.61807 6.70968 6.80439 6.93743 7.00281 7.15001 7.22166 7.24154 7.40068 7.74016 7.87164 7.92880 8.24847 8.52337 8.97578 9.01398 9.80053 11.18518 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.005096 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.558412 B = 5492.754829 C = 7238.005754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.165 4.165 3 C 0.141 3.859 4 N -0.619 5.619 5 C 0.124 3.876 6 C 0.043 3.957 7 O -0.389 6.389 8 C 0.033 3.967 9 C 0.516 3.484 10 O -0.500 6.500 11 C -0.114 4.114 12 C 0.072 3.928 13 H 0.050 0.950 14 C -0.566 4.566 15 H 0.044 0.956 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.062 2.938 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.290 1.290 22 C -0.029 4.029 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.270 0.730 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 3.642 -3.178 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.185 4.185 3 C 0.018 3.982 4 N -0.355 5.355 5 C 0.000 4.000 6 C -0.034 4.034 7 O -0.309 6.309 8 C -0.064 4.064 9 C 0.305 3.695 10 O -0.372 6.372 11 C -0.154 4.154 12 C 0.053 3.947 13 H 0.068 0.932 14 C -0.604 4.604 15 H 0.062 0.938 16 C -0.173 4.173 17 N -0.541 5.541 18 Si 0.891 3.109 19 H -0.209 1.209 20 H -0.218 1.218 21 H -0.216 1.216 22 C -0.030 4.030 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.171 4.171 26 C -0.142 4.142 27 C -0.148 4.148 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.353 4.041 -2.041 14.100 hybrid contribution -1.206 -0.215 -0.663 1.393 sum -14.560 3.826 -2.704 15.295 Atomic orbital electron populations 1.23807 0.95765 1.01668 1.01404 1.23534 0.96292 0.99560 0.99081 1.20612 0.92601 0.94895 0.90109 1.48024 1.12405 1.64053 1.10994 1.21325 1.00253 0.91004 0.87370 1.23078 0.95655 0.93551 0.91141 1.87826 1.65120 1.19026 1.58880 1.22693 1.01018 0.81783 1.00909 1.20927 0.80028 0.77094 0.91454 1.90734 1.51340 1.53461 1.41630 1.21707 0.99878 0.99934 0.93889 1.17878 0.89590 0.96944 0.90333 0.93159 1.21512 1.08450 0.93171 1.37234 0.93778 1.25554 0.96421 1.01902 0.93433 1.70754 1.37953 0.98891 1.46535 0.83657 0.76077 0.74845 0.76305 1.20936 1.21777 1.21634 1.20817 0.93661 0.92066 0.96464 1.20910 1.00295 0.99401 0.92006 1.21006 1.01090 0.94836 0.97791 1.20820 1.04110 0.94819 0.97401 1.20959 1.01039 0.99020 0.93226 1.21060 1.01483 0.95035 0.97259 0.88679 0.88549 0.87342 0.89479 0.89687 0.90567 0.88622 0.92951 0.92249 0.94459 0.94042 0.89970 0.90372 0.91749 0.91874 0.86801 0.87476 0.87608 0.87494 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.86 14.32 29.01 0.42 -1.45 16 2 C -0.17 -1.94 9.74 -36.02 -0.35 -2.29 16 3 C 0.14 1.82 5.47 -5.19 -0.03 1.80 16 4 N -0.62 -9.83 2.42 -175.05 -0.42 -10.26 16 5 C 0.12 1.75 5.81 -4.04 -0.02 1.73 16 6 C 0.04 0.60 6.28 37.16 0.23 0.83 16 7 O -0.39 -5.16 9.53 -35.23 -0.34 -5.49 16 8 C 0.03 0.34 11.01 101.05 1.11 1.46 16 9 C 0.52 10.47 7.43 -10.98 -0.08 10.39 16 10 O -0.50 -12.43 14.60 5.55 0.08 -12.35 16 11 C -0.11 -2.26 3.49 -27.88 -0.10 -2.35 16 12 C 0.07 1.72 1.31 -92.93 -0.12 1.60 16 13 H 0.05 1.36 6.23 -51.93 -0.32 1.04 16 14 C -0.57 -15.44 6.40 -34.44 -0.22 -15.66 16 15 H 0.04 1.21 7.82 -52.49 -0.41 0.80 16 16 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 17 N -0.91 -27.72 13.63 55.43 0.76 -26.96 16 18 Si 1.06 26.37 29.91 -169.99 -5.08 21.29 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C -0.03 -0.65 4.77 -104.62 -0.50 -1.15 16 23 C -0.11 -2.22 8.88 -39.59 -0.35 -2.57 16 24 C -0.13 -2.34 10.05 -39.59 -0.40 -2.74 16 25 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 26 C -0.12 -2.30 10.05 -39.59 -0.40 -2.70 16 27 C -0.13 -2.74 9.67 -39.59 -0.38 -3.12 16 28 H 0.09 0.84 8.06 -52.48 -0.42 0.41 16 29 H 0.10 0.86 7.84 -52.48 -0.41 0.45 16 30 H 0.11 1.36 7.83 -52.48 -0.41 0.95 16 31 H 0.09 1.05 6.77 -51.93 -0.35 0.70 16 32 H 0.09 1.11 6.44 -51.93 -0.33 0.77 16 33 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.10 1.46 7.42 -51.93 -0.39 1.07 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.47 7.13 -51.93 -0.37 1.10 16 41 H 0.06 1.13 7.77 -51.93 -0.40 0.73 16 42 H 0.27 8.18 6.68 -40.82 -0.27 7.91 16 43 H 0.11 2.29 7.80 -52.48 -0.41 1.88 16 44 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 45 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 47 H 0.11 2.28 7.95 -52.49 -0.42 1.87 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -33.08 390.27 -8.33 -41.42 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.52 Total: 4.95 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -1.69 Total: -18.48 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.33 Total: -37.22 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.25 Total: -17.84 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.08 Total: 21.29 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.08 -8.33 -41.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357046861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.848 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds