Wall clock time and date at job start Tue Mar 31 2020 12:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99887 * 2 1 4 4 N 1.46500 * 109.46814 * 124.99757 * 3 2 1 5 5 C 1.46506 * 120.00283 * 270.00045 * 4 3 2 6 6 C 1.52999 * 109.47029 * 270.00555 * 5 4 3 7 7 O 1.42899 * 109.47565 * 64.99398 * 6 5 4 8 8 C 1.42898 * 114.00148 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00010 * 90.00475 * 4 3 2 10 10 O 1.21284 * 120.00085 * 180.02562 * 9 4 3 11 11 C 1.50706 * 119.99984 * 359.97438 * 9 4 3 12 12 C 1.52994 * 109.46995 * 180.02562 * 11 9 4 13 13 H 1.08997 * 109.47639 * 54.05331 * 12 11 9 14 14 C 1.50698 * 109.46998 * 294.05407 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08382 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08385 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48505 * 109.47142 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.08003 * 119.99709 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99933 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99933 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46779 * 5.00378 * 3 2 1 32 32 H 1.08993 * 109.46935 * 244.99837 * 3 2 1 33 33 H 1.09004 * 109.46669 * 29.99915 * 5 4 3 34 34 H 1.08996 * 109.47063 * 149.99789 * 5 4 3 35 35 H 1.08999 * 109.47063 * 185.00177 * 6 5 4 36 36 H 1.09004 * 109.47017 * 304.99511 * 6 5 4 37 37 H 1.08999 * 109.47250 * 300.00130 * 8 7 6 38 38 H 1.09001 * 109.46923 * 60.00790 * 8 7 6 39 39 H 1.09002 * 109.47165 * 180.02562 * 8 7 6 40 40 H 1.08997 * 109.46866 * 60.00030 * 11 9 4 41 41 H 1.09004 * 109.46662 * 299.99914 * 11 9 4 42 42 H 0.96997 * 120.00185 * 354.72930 * 17 16 14 43 43 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 44 44 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 45 45 H 1.08006 * 119.99774 * 179.83158 * 25 24 23 46 46 H 1.07995 * 119.99599 * 179.97438 * 26 25 24 47 47 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8649 2.4250 6 6 2.8485 3.3662 2.4813 7 8 2.0516 4.0421 1.5066 8 6 2.2466 5.4574 1.4764 9 6 4.2497 0.8663 0.9825 10 8 5.0196 0.8880 1.9193 11 6 4.6970 0.3175 -0.3479 12 6 6.1531 -0.1410 -0.2469 13 1 6.2574 -0.8395 0.5833 14 6 7.0409 1.0540 -0.0124 15 1 6.7585 2.0212 -0.4013 16 6 8.2136 0.9126 0.6986 17 7 8.6228 -0.2836 1.0609 18 14 9.2215 2.4201 1.1472 19 1 10.4280 2.0013 1.9052 20 1 9.6362 3.1251 -0.0922 21 1 8.4019 3.3321 1.9849 22 6 6.5556 -0.8217 -1.5297 23 6 6.5911 -0.1047 -2.7110 24 6 6.9640 -0.7281 -3.8870 25 6 7.2936 -2.0707 -3.8832 26 6 7.2529 -2.7890 -2.7028 27 6 6.8837 -2.1645 -1.5262 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9313 33 1 1.4886 1.6966 2.5459 34 1 3.0988 1.3603 3.2260 35 1 2.6074 3.7457 3.4743 36 1 3.9039 3.5407 2.2721 37 1 1.9927 5.8800 2.4486 38 1 3.2895 5.6756 1.2465 39 1 1.6061 5.8962 0.7114 40 1 4.6120 1.0939 -1.1082 41 1 4.0678 -0.5295 -0.6216 42 1 8.0632 -1.0584 0.8956 43 1 6.3301 0.9433 -2.7147 44 1 6.9954 -0.1670 -4.8094 45 1 7.5823 -2.5584 -4.8026 46 1 7.5099 -3.8379 -2.7000 47 1 6.8523 -2.7256 -0.6039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357046861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:34 Heat of formation + Delta-G solvation = -57.203822 kcal Electronic energy + Delta-G solvation = -27286.989885 eV Core-core repulsion = 23627.589621 eV Total energy + Delta-G solvation = -3659.400264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.09747 -39.94415 -38.75805 -37.12517 -36.12750 -34.13691 -33.33277 -31.63090 -31.49016 -30.01346 -27.49452 -27.16279 -26.42023 -24.92533 -23.58352 -23.14543 -21.68761 -21.10196 -19.87570 -18.71626 -18.19747 -17.64115 -17.39299 -16.96065 -16.73504 -16.46990 -15.88296 -15.67323 -15.64197 -15.61109 -15.39791 -14.77115 -14.41551 -14.19921 -14.05224 -13.95328 -13.55220 -13.38990 -13.23117 -13.15518 -12.95150 -12.82336 -12.66183 -12.57644 -12.13502 -12.11687 -12.07030 -11.95461 -11.72137 -11.48002 -10.78790 -10.66982 -10.57534 -10.34007 -10.30514 -9.64865 -9.60270 -9.27578 -8.46012 -6.11375 0.67166 0.73504 1.29461 1.45216 1.56137 1.71613 1.84777 2.25264 2.59437 2.82584 3.10082 3.37029 3.77895 4.00778 4.11798 4.15807 4.16534 4.22100 4.27387 4.29201 4.32974 4.39265 4.44976 4.49472 4.51580 4.54479 4.59647 4.67912 4.79138 4.81379 4.84039 4.84875 4.90420 5.05021 5.12564 5.21998 5.39630 5.41526 5.57813 5.73718 5.73898 5.81733 5.91604 5.93767 6.13966 6.23534 6.29510 6.37925 6.51529 6.77273 7.44512 7.64003 8.94195 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.005096 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.558412 B = 5492.754829 C = 7238.005754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.191 4.191 3 C 0.142 3.858 4 N -0.609 5.609 5 C 0.120 3.880 6 C 0.052 3.948 7 O -0.398 6.398 8 C 0.027 3.973 9 C 0.512 3.488 10 O -0.559 6.559 11 C -0.104 4.104 12 C 0.075 3.925 13 H 0.006 0.994 14 C -0.556 4.556 15 H 0.036 0.964 16 C -0.024 4.024 17 N -0.940 5.940 18 Si 1.098 2.902 19 H -0.287 1.287 20 H -0.268 1.268 21 H -0.286 1.286 22 C -0.054 4.054 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.124 4.124 27 C -0.153 4.153 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.054 0.946 38 H 0.029 0.971 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.257 0.743 43 H 0.111 0.889 44 H 0.143 0.857 45 H 0.148 0.852 46 H 0.135 0.865 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.245 4.380 -5.646 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.210 4.210 3 C 0.020 3.980 4 N -0.342 5.342 5 C -0.002 4.002 6 C -0.026 4.026 7 O -0.318 6.318 8 C -0.069 4.069 9 C 0.302 3.698 10 O -0.436 6.436 11 C -0.144 4.144 12 C 0.056 3.944 13 H 0.025 0.975 14 C -0.594 4.594 15 H 0.054 0.946 16 C -0.222 4.222 17 N -0.579 5.579 18 Si 0.923 3.077 19 H -0.213 1.213 20 H -0.193 1.193 21 H -0.212 1.212 22 C -0.054 4.054 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.162 4.162 26 C -0.142 4.142 27 C -0.171 4.171 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.129 0.871 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.153 0.847 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.538 4.800 -4.552 16.888 hybrid contribution -0.752 -0.458 0.016 0.880 sum -16.290 4.343 -4.536 17.458 Atomic orbital electron populations 1.24038 0.94896 1.03155 0.97615 1.23300 0.96974 0.98207 1.02543 1.20780 0.92200 0.96376 0.88667 1.48009 1.11362 1.62238 1.12615 1.21477 1.01642 0.91193 0.85924 1.22903 0.93675 0.93415 0.92629 1.87788 1.64613 1.20553 1.58803 1.22888 1.00911 0.80397 1.02709 1.21009 0.81080 0.76938 0.90802 1.90707 1.53489 1.56237 1.43182 1.21551 0.97737 1.00882 0.94236 1.17694 0.91559 0.95050 0.90146 0.97537 1.21746 1.08114 0.93853 1.35646 0.94602 1.26722 0.98344 1.03297 0.93848 1.70847 1.38504 0.99281 1.49255 0.83188 0.74904 0.72649 0.77008 1.21284 1.19300 1.21206 1.20600 0.95681 0.92954 0.96189 1.20984 1.01369 0.99376 0.92461 1.21399 0.99247 0.95464 0.98007 1.21311 1.01961 0.94540 0.98397 1.21297 0.99841 1.00534 0.92541 1.21114 1.02932 0.94980 0.98121 0.87244 0.86878 0.88700 0.87849 0.90027 0.87430 0.90353 0.90409 0.95979 0.92757 0.95228 0.87780 0.89295 0.89706 0.93233 0.87068 0.83925 0.83471 0.84683 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 14.32 67.78 0.97 -1.67 16 2 C -0.19 -4.19 9.74 25.64 0.25 -3.94 16 3 C 0.14 3.49 5.47 85.63 0.47 3.96 16 4 N -0.61 -19.54 2.42 -826.14 -2.00 -21.54 16 5 C 0.12 3.39 5.81 86.38 0.50 3.89 16 6 C 0.05 1.40 6.28 71.98 0.45 1.85 16 7 O -0.40 -9.90 9.53 -148.98 -1.42 -11.32 16 8 C 0.03 0.52 11.01 113.37 1.25 1.77 16 9 C 0.51 21.84 7.43 87.66 0.65 22.49 16 10 O -0.56 -29.81 14.60 -3.04 -0.04 -29.85 16 11 C -0.10 -4.30 3.49 29.85 0.10 -4.19 16 12 C 0.07 3.80 1.31 -12.29 -0.02 3.79 16 13 H 0.01 0.38 6.23 -2.39 -0.01 0.36 16 14 C -0.56 -31.72 6.40 25.60 0.16 -31.56 16 15 H 0.04 2.04 7.82 -2.91 -0.02 2.02 16 16 C -0.02 -1.43 5.45 84.65 0.46 -0.97 16 17 N -0.94 -60.77 13.63 21.45 0.29 -60.48 16 18 Si 1.10 54.84 29.91 68.60 2.05 56.89 16 19 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 C -0.05 -2.46 4.77 -19.87 -0.09 -2.56 16 23 C -0.12 -5.03 8.88 22.27 0.20 -4.83 16 24 C -0.12 -4.11 10.05 22.27 0.22 -3.89 16 25 C -0.14 -4.53 10.05 22.27 0.22 -4.31 16 26 C -0.12 -4.39 10.05 22.27 0.22 -4.17 16 27 C -0.15 -6.63 9.67 22.27 0.22 -6.42 16 28 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.11 1.53 7.84 -2.91 -0.02 1.51 16 30 H 0.09 2.35 7.83 -2.91 -0.02 2.32 16 31 H 0.10 2.23 6.77 -2.39 -0.02 2.22 16 32 H 0.08 2.05 6.44 -2.39 -0.02 2.04 16 33 H 0.11 2.35 8.07 -2.38 -0.02 2.33 16 34 H 0.08 2.49 7.42 -2.39 -0.02 2.48 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 3.43 7.13 -2.39 -0.02 3.41 16 41 H 0.08 3.09 7.77 -2.39 -0.02 3.07 16 42 H 0.26 16.77 6.68 -92.71 -0.62 16.15 16 43 H 0.11 4.46 7.80 -2.91 -0.02 4.44 16 44 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 45 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 46 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 47 H 0.09 4.24 7.95 -2.91 -0.02 4.21 16 Total: -1.00 -77.11 390.27 6.20 -70.90 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 1.08 Total: 26.14 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 6.24 Total: -30.75 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -1.71 Total: -82.02 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.46 Total: -41.17 kcal Atomic # 14 Polarization: 54.84 SS G_CDS: 2.05 Total: 56.89 kcal Total: -77.11 6.20 -70.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357046861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.701 kcal (2) G-P(sol) polarization free energy of solvation -77.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds