Wall clock time and date at job start Tue Mar 31 2020 13:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00207 * 2 1 4 4 O 1.20827 * 119.99871 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00287 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.47350 * 180.10213 * 5 3 2 7 7 H 1.09000 * 109.46750 * 306.38281 * 6 5 3 8 8 C 1.53038 * 109.46389 * 66.36015 * 6 5 3 9 9 C 1.53108 * 109.28461 * 179.19594 * 8 6 5 10 10 C 1.53127 * 109.15915 * 302.34590 * 9 8 6 11 11 C 1.53030 * 109.27759 * 57.65164 * 10 9 8 12 12 N 1.46846 * 109.46233 * 186.40872 * 6 5 3 13 13 C 1.46897 * 110.99950 * 54.14892 * 12 6 5 14 14 C 1.50703 * 109.47160 * 173.87850 * 13 12 6 15 15 C 1.38643 * 119.74769 * 269.72172 * 14 13 12 16 16 C 1.37610 * 120.24806 * 179.76446 * 15 14 13 17 17 C 1.40722 * 119.74663 * 0.48994 * 16 15 14 18 18 C 1.41395 * 120.24683 * 179.78942 * 17 16 15 19 19 H 1.08002 * 119.99746 * 29.95346 * 18 17 16 20 20 C 1.39942 * 119.99681 * 209.95129 * 18 17 16 21 21 N 1.30825 * 120.00510 * 12.33934 * 20 18 17 22 22 Si 1.86806 * 119.99848 * 192.33352 * 20 18 17 23 23 H 1.48503 * 109.46975 * 60.00416 * 22 20 18 24 24 H 1.48493 * 109.47297 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47168 * 300.00698 * 22 20 18 26 26 C 1.40719 * 119.50516 * 359.76386 * 17 16 15 27 27 C 1.37616 * 119.75086 * 0.02562 * 26 17 16 28 28 H 1.09004 * 109.47432 * 59.99619 * 1 2 3 29 29 H 1.08994 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47108 * 299.99939 * 1 2 3 31 31 H 1.09003 * 109.47206 * 300.11065 * 5 3 2 32 32 H 1.09004 * 109.47081 * 60.10274 * 5 3 2 33 33 H 1.09008 * 109.50305 * 299.13930 * 8 6 5 34 34 H 1.09007 * 109.50205 * 59.20952 * 8 6 5 35 35 H 1.09005 * 109.52682 * 62.24775 * 9 8 6 36 36 H 1.08997 * 109.52599 * 182.37616 * 9 8 6 37 37 H 1.09003 * 109.50227 * 177.59718 * 10 9 8 38 38 H 1.09005 * 109.50185 * 297.67098 * 10 9 8 39 39 H 1.08996 * 109.46538 * 60.84050 * 11 10 9 40 40 H 1.09002 * 109.46568 * 180.81968 * 11 10 9 41 41 H 1.08996 * 109.47128 * 293.87914 * 13 12 6 42 42 H 1.08996 * 109.47175 * 53.87812 * 13 12 6 43 43 H 1.08002 * 119.87278 * 0.02562 * 15 14 13 44 44 H 1.07992 * 120.12933 * 180.23547 * 16 15 14 45 45 H 0.96994 * 120.00262 * 179.97438 * 21 20 18 46 46 H 1.08004 * 120.12329 * 179.97438 * 26 17 16 47 47 H 1.07992 * 119.87651 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7420 0.0021 7 1 3.5182 3.2648 -0.8240 8 6 3.5906 3.3924 1.3254 9 6 4.0443 4.8547 1.3319 10 6 5.5598 4.9116 1.1202 11 6 5.9123 4.2172 -0.1971 12 7 5.4582 2.8213 -0.1530 13 6 5.9017 2.0856 -1.3446 14 6 7.3765 2.3129 -1.5554 15 6 7.8039 3.3728 -2.3403 16 6 9.1482 3.5928 -2.5357 17 6 10.0900 2.7309 -1.9438 18 6 11.4737 2.9445 -2.1412 19 1 11.8486 3.9451 -2.2985 20 6 12.3573 1.8593 -2.1327 21 7 11.8932 0.6373 -2.1852 22 14 14.1997 2.1558 -2.0466 23 1 14.5247 2.8928 -0.7990 24 1 14.9115 0.8526 -2.0518 25 1 14.6275 2.9577 -3.2209 26 6 9.6444 1.6552 -1.1535 27 6 8.2953 1.4569 -0.9681 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9565 0.7789 0.8882 32 1 3.9556 0.7825 -0.8918 33 1 2.5067 3.3472 1.4331 34 1 4.0608 2.8612 2.1530 35 1 3.5438 5.3951 0.5284 36 1 3.7920 5.3102 2.2894 37 1 5.8830 5.9519 1.0812 38 1 6.0617 4.4053 1.9448 39 1 5.4213 4.7329 -1.0223 40 1 6.9921 4.2431 -0.3438 41 1 5.7145 1.0209 -1.2048 42 1 5.3513 2.4399 -2.2161 43 1 7.0791 4.0308 -2.7966 44 1 9.4790 4.4212 -3.1443 45 1 12.5057 -0.1148 -2.1797 46 1 10.3586 0.9873 -0.6948 47 1 7.9511 0.6323 -0.3617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399217821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:02 Heat of formation + Delta-G solvation = -75.616148 kcal Electronic energy + Delta-G solvation = -26675.216308 eV Core-core repulsion = 23015.017626 eV Total energy + Delta-G solvation = -3660.198682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.78603 -39.17889 -37.42981 -36.57213 -34.21207 -33.23396 -32.43691 -29.94127 -29.24828 -28.86938 -27.17467 -26.57046 -24.36403 -22.65387 -22.09407 -21.02657 -20.49517 -19.83458 -19.34038 -17.79680 -17.26674 -16.74886 -16.65907 -15.63577 -15.30889 -14.87065 -14.61124 -14.22423 -14.14456 -13.91219 -13.49330 -13.33242 -13.21041 -13.05639 -12.76915 -12.44382 -12.38456 -12.17431 -11.93655 -11.77738 -11.54539 -11.50943 -11.11257 -11.05062 -10.97255 -10.86992 -10.77797 -10.57111 -10.45218 -10.35731 -10.04865 -9.97095 -9.54192 -9.35255 -9.17081 -7.96065 -7.44885 -7.21789 -6.71090 -4.35977 2.06745 2.51684 2.75611 3.05094 3.07845 3.10456 3.17675 3.95206 4.23810 4.58698 4.67426 4.80098 4.85860 4.89321 4.93656 5.10014 5.22657 5.27883 5.32578 5.41348 5.56494 5.65719 5.69208 5.77291 5.85993 5.88208 5.95465 6.07196 6.09317 6.15914 6.22824 6.24307 6.33073 6.35031 6.43101 6.54327 6.58359 6.95055 7.09747 7.27362 7.32872 7.44906 7.46911 7.61791 7.62299 7.85802 8.06144 8.11359 8.30790 8.65065 8.90819 8.97281 10.24483 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.002784 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.682951 B =10053.604620 C =10864.668548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.506 6.506 5 C -0.114 4.114 6 C 0.098 3.902 7 H 0.045 0.955 8 C -0.115 4.115 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.058 3.942 12 N -0.526 5.526 13 C 0.113 3.887 14 C -0.207 4.207 15 C -0.087 4.087 16 C -0.222 4.222 17 C 0.114 3.886 18 C -0.467 4.467 19 H 0.075 0.925 20 C 0.075 3.925 21 N -0.801 5.801 22 Si 0.909 3.091 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.267 1.267 26 C -0.159 4.159 27 C -0.081 4.081 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.023 0.977 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.280 0.720 46 H 0.115 0.885 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.213 -0.114 5.538 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.394 6.394 5 C -0.152 4.152 6 C -0.011 4.011 7 H 0.063 0.937 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.069 4.069 12 N -0.251 5.251 13 C -0.013 4.013 14 C -0.208 4.208 15 C -0.106 4.106 16 C -0.241 4.241 17 C 0.112 3.888 18 C -0.497 4.497 19 H 0.093 0.907 20 C -0.142 4.142 21 N -0.427 5.427 22 Si 0.733 3.267 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.179 4.179 27 C -0.100 4.100 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.041 0.959 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.157 -0.293 5.926 17.212 hybrid contribution 0.271 0.404 -0.833 0.965 sum -15.886 0.111 5.092 16.682 Atomic orbital electron populations 1.23241 0.76560 1.03582 1.02460 1.86531 1.23294 1.33719 1.84196 1.23883 0.92318 0.81161 0.71926 1.90641 1.67351 1.36167 1.45235 1.21577 0.86583 1.00181 1.06859 1.21347 0.89165 0.92197 0.98363 0.93668 1.21728 1.01075 0.95887 0.96586 1.21539 0.96418 0.96377 1.01150 1.21625 0.95479 0.99850 0.98610 1.22136 1.02455 0.86803 0.95526 1.62071 1.08841 1.13771 1.40429 1.20855 0.93943 0.97392 0.89129 1.18842 0.92265 1.01244 1.08482 1.20375 0.95052 0.96569 0.98570 1.20993 0.92534 1.04116 1.06485 1.17626 0.92868 0.90458 0.87878 1.19532 0.91712 0.94320 1.44118 0.90656 1.25863 1.01334 0.94614 0.92358 1.69785 1.37414 0.99282 1.36231 0.86364 0.81959 0.78440 0.79894 1.18911 1.20396 1.19126 1.21284 0.93760 1.01278 1.01558 1.20497 0.93455 0.97494 0.98516 0.91978 0.88188 0.91968 0.86705 0.87097 0.90774 0.91483 0.92575 0.92265 0.91973 0.91172 0.95811 0.88453 0.91217 0.95916 0.89930 0.89124 0.90938 0.86718 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.91 10.57 -39.26 -0.41 -4.32 16 3 C 0.46 5.60 7.68 36.01 0.28 5.88 16 4 O -0.51 -7.14 13.80 -18.75 -0.26 -7.40 16 5 C -0.11 -1.33 5.06 -27.89 -0.14 -1.47 16 6 C 0.10 1.32 1.54 -67.73 -0.10 1.21 16 7 H 0.05 0.67 7.90 -51.93 -0.41 0.26 16 8 C -0.12 -1.45 5.12 -26.66 -0.14 -1.58 16 9 C -0.12 -1.43 6.00 -26.61 -0.16 -1.59 16 10 C -0.12 -1.58 6.09 -26.65 -0.16 -1.74 16 11 C 0.06 0.92 4.71 -3.83 -0.02 0.90 16 12 N -0.53 -8.12 4.61 -228.13 -1.05 -9.17 16 13 C 0.11 1.89 4.57 -4.98 -0.02 1.87 16 14 C -0.21 -4.25 4.31 -104.33 -0.45 -4.70 16 15 C -0.09 -1.86 7.72 -39.66 -0.31 -2.16 16 16 C -0.22 -5.30 9.80 -38.87 -0.38 -5.68 16 17 C 0.11 2.98 5.53 -106.82 -0.59 2.39 16 18 C -0.47 -12.28 9.05 -37.74 -0.34 -12.62 16 19 H 0.08 1.91 7.88 -52.49 -0.41 1.50 16 20 C 0.08 1.88 5.21 -17.34 -0.09 1.79 16 21 N -0.80 -20.67 11.01 55.55 0.61 -20.06 16 22 Si 0.91 18.69 29.58 -169.99 -5.03 13.67 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.16 -4.04 8.65 -38.87 -0.34 -4.37 16 27 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 31 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.11 1.24 6.09 -51.93 -0.32 0.92 16 33 H 0.07 0.95 6.10 -51.92 -0.32 0.64 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 1.79 5.61 -51.93 -0.29 1.50 16 41 H 0.07 1.08 6.39 -51.93 -0.33 0.75 16 42 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 43 H 0.08 1.60 8.05 -52.49 -0.42 1.18 16 44 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 46 H 0.11 3.03 6.38 -52.48 -0.33 2.70 16 47 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 370.44 15.07 5.58 5.58 Total: -1.00 -27.91 370.44 -10.30 -38.22 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.46 Total: 6.23 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.28 Total: -22.74 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: -0.44 Total: -29.23 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.67 Total: -11.73 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.91 -10.30 -38.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399217821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.400 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds