Wall clock time and date at job start Tue Mar 31 2020 11:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99346 * 2 1 4 4 C 1.38441 * 120.11592 * 359.97438 * 3 2 1 5 5 C 1.38498 * 120.24641 * 179.97438 * 4 3 2 6 6 C 1.38286 * 119.97796 * 0.03672 * 5 4 3 7 7 C 1.38500 * 119.96817 * 359.97438 * 6 5 4 8 8 C 1.38444 * 120.24968 * 359.97438 * 7 6 5 9 9 O 1.35989 * 120.11246 * 180.02562 * 8 7 6 10 10 C 1.42902 * 117.00013 * 359.97438 * 9 8 7 11 11 C 1.51392 * 109.74075 * 180.02562 * 6 5 4 12 12 H 1.08999 * 110.30004 * 223.87097 * 11 6 5 13 13 N 1.46902 * 110.30538 * 101.72601 * 11 6 5 14 14 C 1.46898 * 111.00170 * 86.55416 * 13 11 6 15 15 C 1.53000 * 109.47236 * 183.98030 * 14 13 11 16 16 C 1.50695 * 115.55072 * 65.34492 * 15 14 13 17 17 H 1.07999 * 120.00161 * 265.92341 * 16 15 14 18 18 C 1.37874 * 119.99783 * 85.93251 * 16 15 14 19 19 N 1.31514 * 120.00102 * 184.41187 * 18 16 15 20 20 Si 1.86803 * 120.00064 * 4.40774 * 18 16 15 21 21 H 1.48503 * 109.47039 * 94.24498 * 20 18 16 22 22 H 1.48497 * 109.47374 * 214.24830 * 20 18 16 23 23 H 1.48500 * 109.46988 * 334.24896 * 20 18 16 24 24 C 1.53008 * 117.49666 * 279.67857 * 15 14 13 25 25 C 1.53004 * 117.49761 * 211.02632 * 15 14 13 26 26 C 1.54334 * 105.17574 * 342.79970 * 11 6 5 27 27 C 1.51706 * 130.20091 * 179.85929 * 5 4 3 28 28 H 1.08998 * 109.47060 * 299.99937 * 1 2 3 29 29 H 1.08995 * 109.47395 * 60.00499 * 1 2 3 30 30 H 1.08998 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.87596 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.87673 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.47544 * 179.97438 * 10 9 8 34 34 H 1.08996 * 109.47159 * 300.00465 * 10 9 8 35 35 H 1.08999 * 109.46967 * 60.00127 * 10 9 8 36 36 H 1.00903 * 110.99345 * 322.60426 * 13 11 6 37 37 H 1.08995 * 109.47339 * 303.97812 * 14 13 11 38 38 H 1.09001 * 109.46973 * 63.98161 * 14 13 11 39 39 H 0.97003 * 120.00260 * 179.97438 * 19 18 16 40 40 H 1.09008 * 117.49676 * 0.02562 * 24 15 14 41 41 H 1.08997 * 117.49619 * 145.01923 * 24 15 14 42 42 H 1.09000 * 117.49534 * 214.97821 * 25 15 14 43 43 H 1.09000 * 117.49770 * 359.97438 * 25 15 14 44 44 H 1.08999 * 110.82045 * 144.60968 * 26 11 6 45 45 H 1.09001 * 110.81971 * 267.95643 * 26 11 6 46 46 H 1.09000 * 110.25081 * 78.29011 * 27 5 4 47 47 H 1.08991 * 110.49373 * 316.04017 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2945 2.3743 -0.0005 5 6 1.9203 3.6098 0.0000 6 6 3.3011 3.6850 0.0003 7 6 4.0571 2.5245 0.0006 8 6 3.4358 1.2873 0.0011 9 8 4.1808 0.1497 0.0020 10 6 5.6014 0.3045 0.0017 11 6 3.7343 5.1356 0.0015 12 1 4.5488 5.2876 -0.7067 13 7 4.1482 5.5429 1.3509 14 6 5.5644 5.2299 1.5841 15 6 5.9321 5.5761 3.0284 16 6 5.2458 4.7542 4.0887 17 1 4.3350 5.1130 4.5449 18 6 5.7808 3.5441 4.4766 19 7 5.1375 2.7866 5.3380 20 14 7.4193 2.9805 3.7787 21 1 8.5130 3.3759 4.7022 22 1 7.4104 1.5035 3.6254 23 1 7.6371 3.6144 2.4535 24 6 6.2244 7.0430 3.3506 25 6 7.3682 6.0269 3.3030 26 6 2.4865 5.9302 -0.4386 27 6 1.3291 5.0070 -0.0032 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2160 2.3175 -0.0014 32 1 5.1355 2.5849 0.0013 33 1 6.0740 -0.6777 0.0029 34 1 5.9068 0.8540 -0.8887 35 1 5.9070 0.8554 0.8912 36 1 3.5630 5.1155 2.0530 37 1 5.7350 4.1674 1.4106 38 1 6.1826 5.8134 0.9019 39 1 5.5137 1.9350 5.6106 40 1 6.1543 7.7614 2.5338 41 1 5.9207 7.4133 4.3298 42 1 7.8165 5.7291 4.2509 43 1 8.0510 6.0764 2.4549 44 1 2.4344 6.8878 0.0795 45 1 2.4807 6.0753 -1.5189 46 1 0.9880 5.2746 0.9968 47 1 0.5057 5.0712 -0.7144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430760907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:02 Heat of formation + Delta-G solvation = -17.397796 kcal Electronic energy + Delta-G solvation = -27796.507026 eV Core-core repulsion = 24138.832880 eV Total energy + Delta-G solvation = -3657.674145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67777 -38.71094 -38.27546 -37.04923 -34.65161 -32.67582 -32.06204 -30.12960 -29.20933 -27.17105 -26.69907 -26.49536 -25.47001 -23.70103 -22.01006 -21.55815 -20.85209 -20.23599 -18.91974 -17.90302 -16.83511 -16.69816 -16.19294 -15.95367 -15.16370 -15.12557 -15.04432 -14.87041 -14.45452 -14.32635 -13.82634 -13.50920 -13.33812 -12.85996 -12.66445 -12.55160 -12.28572 -12.07954 -11.99245 -11.82847 -11.55246 -11.25197 -11.19343 -11.10053 -11.06745 -10.86954 -10.71239 -10.63966 -10.38351 -10.22119 -9.99854 -9.42828 -9.01039 -8.63329 -8.48857 -8.37741 -7.81892 -7.37522 -6.10088 -4.12261 1.48277 1.60720 3.25317 3.35229 3.36164 3.40283 3.44851 3.85784 4.41854 4.53922 4.65123 4.79049 5.06369 5.07367 5.16679 5.17539 5.20058 5.23056 5.31298 5.32777 5.38527 5.45622 5.47944 5.60550 5.65944 5.70329 5.82240 5.89338 5.98612 6.04170 6.16056 6.19570 6.22500 6.27928 6.30522 6.41095 6.47779 6.55989 6.57679 6.82207 6.83324 6.85227 7.12474 7.18649 7.21645 7.73734 7.76142 7.79207 8.14128 8.53253 8.94607 9.54219 11.01626 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.005528 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.709092 B = 5064.205794 C = 6277.876768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.099 3.901 4 C -0.163 4.163 5 C -0.087 4.087 6 C -0.117 4.117 7 C -0.144 4.144 8 C 0.098 3.902 9 O -0.307 6.307 10 C 0.025 3.975 11 C 0.126 3.874 12 H 0.077 0.923 13 N -0.660 5.660 14 C 0.098 3.902 15 C 0.005 3.995 16 C -0.486 4.486 17 H 0.078 0.922 18 C 0.079 3.921 19 N -0.895 5.895 20 Si 0.873 3.127 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.256 1.256 24 C -0.169 4.169 25 C -0.205 4.205 26 C -0.109 4.109 27 C -0.077 4.077 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.357 0.643 37 H 0.025 0.975 38 H 0.045 0.955 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 -0.648 -14.346 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.054 3.946 4 C -0.182 4.182 5 C -0.088 4.088 6 C -0.120 4.120 7 C -0.164 4.164 8 C 0.053 3.947 9 O -0.221 6.221 10 C -0.070 4.070 11 C 0.015 3.985 12 H 0.096 0.904 13 N -0.291 5.291 14 C -0.031 4.031 15 C 0.004 3.996 16 C -0.524 4.524 17 H 0.096 0.904 18 C -0.124 4.124 19 N -0.532 5.532 20 Si 0.701 3.299 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.180 1.180 24 C -0.206 4.206 25 C -0.243 4.243 26 C -0.146 4.146 27 C -0.114 4.114 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.178 0.822 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.983 -0.544 -14.402 15.605 hybrid contribution 1.007 -1.311 0.035 1.653 sum -4.976 -1.855 -14.368 15.318 Atomic orbital electron populations 1.23014 0.79027 1.03592 1.01128 1.86161 1.20678 1.25970 1.89347 1.17973 0.88933 0.84896 1.02840 1.20377 0.99433 0.90483 1.07889 1.20328 0.94182 0.94204 1.00081 1.21115 0.94099 0.96186 1.00559 1.20520 1.00086 0.90248 1.05529 1.18033 0.88167 0.85918 1.02581 1.86123 1.18503 1.28233 1.89232 1.23065 0.78825 1.03668 1.01460 1.21055 0.97235 0.86815 0.93354 0.90438 1.60794 1.04816 1.61595 1.01855 1.21653 0.88034 0.97204 0.96219 1.19365 0.93244 0.93853 0.93122 1.20279 1.10506 1.02561 1.19047 0.90448 1.24968 0.96985 0.96054 0.94360 1.69899 1.38470 1.11932 1.32938 0.86937 0.85012 0.76957 0.80992 1.20650 1.22294 1.18014 1.22712 1.03432 0.93341 1.01139 1.22971 0.92655 1.07410 1.01264 1.22290 0.93077 0.98932 1.00348 1.21074 0.98062 0.90131 1.02113 0.92693 0.92994 0.88517 0.85225 0.85300 0.88320 0.92908 0.92436 0.82207 0.95727 0.93674 0.92694 0.90850 0.89998 0.89857 0.91277 0.89322 0.91286 0.89935 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.91 10.29 -34.15 -0.35 -5.27 16 3 C 0.10 1.68 6.70 -39.17 -0.26 1.42 16 4 C -0.16 -2.45 9.04 -39.41 -0.36 -2.80 16 5 C -0.09 -1.33 6.14 -104.01 -0.64 -1.97 16 6 C -0.12 -1.96 5.37 -104.17 -0.56 -2.52 16 7 C -0.14 -2.55 8.54 -39.41 -0.34 -2.89 16 8 C 0.10 1.79 6.70 -39.16 -0.26 1.53 16 9 O -0.31 -5.49 10.29 -34.13 -0.35 -5.84 16 10 C 0.03 0.36 9.81 101.05 0.99 1.35 16 11 C 0.13 1.95 3.18 -67.82 -0.22 1.74 16 12 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 13 N -0.66 -12.18 6.30 -106.85 -0.67 -12.85 16 14 C 0.10 1.99 5.02 -3.82 -0.02 1.97 16 15 C 0.01 0.12 0.99 -155.66 -0.15 -0.03 16 16 C -0.49 -13.19 8.76 -34.44 -0.30 -13.49 16 17 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 18 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 19 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 20 Si 0.87 21.45 24.90 -169.99 -4.23 17.22 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.26 -5.88 5.75 56.52 0.33 -5.56 16 24 C -0.17 -3.46 9.96 -26.69 -0.27 -3.73 16 25 C -0.21 -4.37 7.27 -26.69 -0.19 -4.56 16 26 C -0.11 -1.36 6.76 -25.34 -0.17 -1.53 16 27 C -0.08 -0.97 6.80 -26.69 -0.18 -1.15 16 28 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 29 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.13 1.56 6.29 -52.48 -0.33 1.23 16 32 H 0.13 2.20 5.69 -52.48 -0.30 1.90 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 35 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 36 H 0.36 7.46 7.82 -39.29 -0.31 7.15 16 37 H 0.02 0.53 5.97 -51.93 -0.31 0.22 16 38 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 41 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.08 1.87 7.03 -51.93 -0.37 1.50 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -31.40 371.04 -8.75 -40.15 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.47 Total: 10.55 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -2.03 Total: -23.25 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.10 Total: -39.16 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.70 Total: -11.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.23 Total: 17.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.40 -8.75 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430760907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.749 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds