Wall clock time and date at job start Tue Mar 31 2020 11:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99346 * 2 1 4 4 C 1.38441 * 120.11592 * 359.97438 * 3 2 1 5 5 C 1.38498 * 120.24641 * 179.97438 * 4 3 2 6 6 C 1.38286 * 119.97796 * 0.03672 * 5 4 3 7 7 C 1.38500 * 119.96817 * 359.97438 * 6 5 4 8 8 C 1.38444 * 120.24968 * 359.97438 * 7 6 5 9 9 O 1.35989 * 120.11246 * 180.02562 * 8 7 6 10 10 C 1.42902 * 117.00013 * 359.97438 * 9 8 7 11 11 C 1.51392 * 109.74075 * 180.02562 * 6 5 4 12 12 H 1.08999 * 110.30004 * 223.87097 * 11 6 5 13 13 N 1.46902 * 110.30538 * 101.72601 * 11 6 5 14 14 C 1.46898 * 111.00170 * 86.55416 * 13 11 6 15 15 C 1.53000 * 109.47236 * 183.98030 * 14 13 11 16 16 C 1.50695 * 115.55072 * 65.34492 * 15 14 13 17 17 H 1.07999 * 120.00161 * 265.92341 * 16 15 14 18 18 C 1.37874 * 119.99783 * 85.93251 * 16 15 14 19 19 N 1.31514 * 120.00102 * 184.41187 * 18 16 15 20 20 Si 1.86803 * 120.00064 * 4.40774 * 18 16 15 21 21 H 1.48503 * 109.47039 * 94.24498 * 20 18 16 22 22 H 1.48497 * 109.47374 * 214.24830 * 20 18 16 23 23 H 1.48500 * 109.46988 * 334.24896 * 20 18 16 24 24 C 1.53008 * 117.49666 * 279.67857 * 15 14 13 25 25 C 1.53004 * 117.49761 * 211.02632 * 15 14 13 26 26 C 1.54334 * 105.17574 * 342.79970 * 11 6 5 27 27 C 1.51706 * 130.20091 * 179.85929 * 5 4 3 28 28 H 1.08998 * 109.47060 * 299.99937 * 1 2 3 29 29 H 1.08995 * 109.47395 * 60.00499 * 1 2 3 30 30 H 1.08998 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.87596 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.87673 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.47544 * 179.97438 * 10 9 8 34 34 H 1.08996 * 109.47159 * 300.00465 * 10 9 8 35 35 H 1.08999 * 109.46967 * 60.00127 * 10 9 8 36 36 H 1.00903 * 110.99345 * 322.60426 * 13 11 6 37 37 H 1.08995 * 109.47339 * 303.97812 * 14 13 11 38 38 H 1.09001 * 109.46973 * 63.98161 * 14 13 11 39 39 H 0.97003 * 120.00260 * 179.97438 * 19 18 16 40 40 H 1.09008 * 117.49676 * 0.02562 * 24 15 14 41 41 H 1.08997 * 117.49619 * 145.01923 * 24 15 14 42 42 H 1.09000 * 117.49534 * 214.97821 * 25 15 14 43 43 H 1.09000 * 117.49770 * 359.97438 * 25 15 14 44 44 H 1.08999 * 110.82045 * 144.60968 * 26 11 6 45 45 H 1.09001 * 110.81971 * 267.95643 * 26 11 6 46 46 H 1.09000 * 110.25081 * 78.29011 * 27 5 4 47 47 H 1.08991 * 110.49373 * 316.04017 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2945 2.3743 -0.0005 5 6 1.9203 3.6098 0.0000 6 6 3.3011 3.6850 0.0003 7 6 4.0571 2.5245 0.0006 8 6 3.4358 1.2873 0.0011 9 8 4.1808 0.1497 0.0020 10 6 5.6014 0.3045 0.0017 11 6 3.7343 5.1356 0.0015 12 1 4.5488 5.2876 -0.7067 13 7 4.1482 5.5429 1.3509 14 6 5.5644 5.2299 1.5841 15 6 5.9321 5.5761 3.0284 16 6 5.2458 4.7542 4.0887 17 1 4.3350 5.1130 4.5449 18 6 5.7808 3.5441 4.4766 19 7 5.1375 2.7866 5.3380 20 14 7.4193 2.9805 3.7787 21 1 8.5130 3.3759 4.7022 22 1 7.4104 1.5035 3.6254 23 1 7.6371 3.6144 2.4535 24 6 6.2244 7.0430 3.3506 25 6 7.3682 6.0269 3.3030 26 6 2.4865 5.9302 -0.4386 27 6 1.3291 5.0070 -0.0032 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2160 2.3175 -0.0014 32 1 5.1355 2.5849 0.0013 33 1 6.0740 -0.6777 0.0029 34 1 5.9068 0.8540 -0.8887 35 1 5.9070 0.8554 0.8912 36 1 3.5630 5.1155 2.0530 37 1 5.7350 4.1674 1.4106 38 1 6.1826 5.8134 0.9019 39 1 5.5137 1.9350 5.6106 40 1 6.1543 7.7614 2.5338 41 1 5.9207 7.4133 4.3298 42 1 7.8165 5.7291 4.2509 43 1 8.0510 6.0764 2.4549 44 1 2.4344 6.8878 0.0795 45 1 2.4807 6.0753 -1.5189 46 1 0.9880 5.2746 0.9968 47 1 0.5057 5.0712 -0.7144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430760907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:01 Heat of formation + Delta-G solvation = -37.557124 kcal Electronic energy + Delta-G solvation = -27797.381200 eV Core-core repulsion = 24138.832880 eV Total energy + Delta-G solvation = -3658.548319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87260 -39.93786 -39.46674 -38.70702 -35.93366 -34.25202 -33.91372 -31.39003 -30.31228 -28.30422 -28.14050 -27.59950 -27.26295 -25.17451 -23.24210 -23.16679 -22.02694 -21.46585 -20.74428 -19.11062 -18.29162 -17.92432 -17.85212 -17.13397 -16.82962 -16.40569 -16.34442 -16.22332 -15.64716 -15.54910 -15.37636 -14.89046 -14.70591 -14.64585 -14.07290 -13.79067 -13.64524 -13.50693 -13.19828 -13.06331 -12.97425 -12.73227 -12.66054 -12.32227 -12.29885 -12.16201 -12.13987 -11.95418 -11.82381 -11.71940 -11.41205 -11.21718 -10.96000 -10.55737 -10.24590 -9.70632 -9.26023 -8.65105 -8.29469 -6.34091 0.24394 0.36107 1.28625 1.31783 1.44518 2.26342 2.31483 2.34520 2.61476 3.05881 3.15037 3.41614 3.53600 3.75611 3.92191 4.07806 4.14987 4.18276 4.20429 4.24161 4.35170 4.37193 4.38328 4.42741 4.47107 4.52420 4.53872 4.55371 4.69515 4.77187 4.78680 4.87198 4.90497 4.91176 4.97735 5.10169 5.13351 5.17662 5.32440 5.39702 5.45262 5.54999 5.61528 5.67716 5.74854 6.03426 6.28697 6.37439 6.52692 6.55494 6.76305 7.35417 8.85702 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.005528 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.709092 B = 5064.205794 C = 6277.876768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.086 3.914 4 C -0.163 4.163 5 C -0.090 4.090 6 C -0.137 4.137 7 C -0.159 4.159 8 C 0.067 3.933 9 O -0.328 6.328 10 C 0.022 3.978 11 C 0.123 3.877 12 H 0.086 0.914 13 N -0.657 5.657 14 C 0.106 3.894 15 C -0.020 4.020 16 C -0.475 4.475 17 H 0.032 0.968 18 C 0.022 3.978 19 N -0.947 5.947 20 Si 0.928 3.072 21 H -0.276 1.276 22 H -0.303 1.303 23 H -0.227 1.227 24 C -0.151 4.151 25 C -0.200 4.200 26 C -0.099 4.099 27 C -0.073 4.073 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.160 0.840 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.339 0.661 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.261 0.739 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 0.902 -16.968 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.040 3.960 4 C -0.182 4.182 5 C -0.091 4.091 6 C -0.139 4.139 7 C -0.178 4.178 8 C 0.022 3.978 9 O -0.242 6.242 10 C -0.073 4.073 11 C 0.013 3.987 12 H 0.105 0.895 13 N -0.285 5.285 14 C -0.023 4.023 15 C -0.021 4.021 16 C -0.513 4.513 17 H 0.051 0.949 18 C -0.175 4.175 19 N -0.588 5.588 20 Si 0.753 3.247 21 H -0.202 1.202 22 H -0.230 1.230 23 H -0.149 1.149 24 C -0.188 4.188 25 C -0.238 4.238 26 C -0.136 4.136 27 C -0.110 4.110 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.137 0.863 31 H 0.177 0.823 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.157 0.843 37 H 0.024 0.976 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.960 1.043 -17.054 18.095 hybrid contribution 0.869 -1.778 0.890 2.170 sum -5.091 -0.736 -16.164 16.963 Atomic orbital electron populations 1.23359 0.76453 1.05567 1.02272 1.86125 1.23436 1.25828 1.89275 1.18273 0.88994 0.85971 1.02753 1.20717 1.00890 0.89783 1.06794 1.20767 0.93954 0.95638 0.98700 1.21355 0.94959 0.96414 1.01145 1.20633 1.00196 0.90764 1.06211 1.18397 0.89140 0.86189 1.04042 1.86078 1.19918 1.28705 1.89506 1.23246 0.77608 1.05237 1.01211 1.21252 0.98997 0.86675 0.91750 0.89550 1.60860 1.03567 1.61239 1.02824 1.21519 0.89569 0.96474 0.94767 1.19317 0.94558 0.95073 0.93187 1.20413 1.08894 1.02733 1.19263 0.94929 1.25746 1.00504 0.96373 0.94854 1.70055 1.40593 1.12617 1.35491 0.86049 0.80730 0.76193 0.81709 1.20192 1.23049 1.14930 1.22725 1.01971 0.92528 1.01621 1.23019 0.92267 1.06854 1.01665 1.22295 0.91077 0.98366 1.01894 1.21139 0.98949 0.88121 1.02767 0.92269 0.90959 0.86310 0.82261 0.85606 0.85749 0.91016 0.94722 0.84299 0.97617 0.91125 0.93043 0.87877 0.91064 0.91358 0.88295 0.88952 0.88720 0.90413 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -10.58 10.29 -79.71 -0.82 -11.40 16 3 C 0.09 2.93 6.70 22.54 0.15 3.08 16 4 C -0.16 -4.71 9.04 22.38 0.20 -4.51 16 5 C -0.09 -2.61 6.14 -19.47 -0.12 -2.73 16 6 C -0.14 -4.47 5.37 -19.57 -0.11 -4.58 16 7 C -0.16 -5.69 8.54 22.38 0.19 -5.50 16 8 C 0.07 2.52 6.70 22.54 0.15 2.67 16 9 O -0.33 -12.08 10.29 -79.63 -0.82 -12.90 16 10 C 0.02 0.63 9.81 113.37 1.11 1.74 16 11 C 0.12 3.59 3.18 44.84 0.14 3.73 16 12 H 0.09 2.35 7.90 -2.39 -0.02 2.33 16 13 N -0.66 -23.41 6.30 -491.96 -3.10 -26.51 16 14 C 0.11 4.13 5.02 86.30 0.43 4.56 16 15 C -0.02 -0.90 0.99 -52.93 -0.05 -0.95 16 16 C -0.48 -26.48 8.76 25.60 0.22 -26.26 16 17 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 18 C 0.02 1.30 5.47 84.65 0.46 1.77 16 19 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 20 Si 0.93 44.74 24.90 68.60 1.71 46.45 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 23 H -0.23 -9.76 5.75 99.48 0.57 -9.19 16 24 C -0.15 -5.85 9.96 30.62 0.30 -5.54 16 25 C -0.20 -7.99 7.27 30.62 0.22 -7.77 16 26 C -0.10 -2.16 6.76 31.50 0.21 -1.94 16 27 C -0.07 -1.63 6.80 30.62 0.21 -1.42 16 28 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 29 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16 30 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.16 3.46 6.29 -2.91 -0.02 3.44 16 32 H 0.13 4.40 5.69 -2.91 -0.02 4.38 16 33 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.07 1.76 7.66 -2.39 -0.02 1.75 16 35 H 0.03 1.15 7.66 -2.39 -0.02 1.13 16 36 H 0.34 14.28 7.82 -89.69 -0.70 13.58 16 37 H 0.01 0.24 5.97 -2.39 -0.01 0.23 16 38 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 41 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.07 2.94 7.03 -2.39 -0.02 2.92 16 43 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -71.59 371.04 2.26 -69.33 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: 0.14 Total: 36.93 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 4.85 Total: -42.21 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.80 Total: -86.21 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.64 Total: -24.29 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.71 Total: 46.45 kcal Total: -71.59 2.26 -69.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430760907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.775 kcal (2) G-P(sol) polarization free energy of solvation -71.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds