Wall clock time and date at job start Tue Mar 31 2020 12:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99734 * 2 1 4 4 H 1.09001 * 110.01837 * 29.29666 * 3 2 1 5 5 C 1.54266 * 110.02987 * 267.90664 * 3 2 1 6 6 C 1.54960 * 104.16041 * 217.13766 * 5 3 2 7 7 C 1.54896 * 102.77604 * 37.88899 * 6 5 3 8 8 C 1.53872 * 110.02979 * 150.69149 * 3 2 1 9 9 H 1.09001 * 110.03635 * 0.02562 * 8 3 2 10 10 N 1.46502 * 110.03086 * 238.56623 * 8 3 2 11 11 C 1.34778 * 119.99769 * 155.00356 * 10 8 3 12 12 O 1.21277 * 120.00432 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99747 * 180.02562 * 11 10 8 14 14 C 1.52998 * 109.46993 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47424 * 54.99643 * 14 13 11 16 16 C 1.50706 * 109.47074 * 294.99759 * 14 13 11 17 17 H 1.07994 * 119.99957 * 334.72478 * 16 14 13 18 18 C 1.37872 * 120.00003 * 154.72576 * 16 14 13 19 19 N 1.31509 * 120.00134 * 184.85717 * 18 16 14 20 20 Si 1.86803 * 119.99999 * 4.85329 * 18 16 14 21 21 H 1.48498 * 109.46993 * 84.63912 * 20 18 16 22 22 H 1.48501 * 109.47205 * 204.63883 * 20 18 16 23 23 H 1.48500 * 109.46987 * 324.63784 * 20 18 16 24 24 C 1.50700 * 109.46990 * 174.99982 * 14 13 11 25 25 C 1.38231 * 120.00161 * 55.27691 * 24 14 13 26 26 C 1.38234 * 120.00190 * 179.76734 * 25 24 14 27 27 C 1.38234 * 120.00024 * 0.50245 * 26 25 24 28 28 C 1.38239 * 119.99506 * 359.75056 * 27 26 25 29 29 C 1.38226 * 120.00185 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47381 * 60.00373 * 1 2 3 31 31 H 1.09004 * 109.47287 * 300.00155 * 1 2 3 32 32 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 33 33 H 1.09001 * 110.48919 * 335.78719 * 5 3 2 34 34 H 1.08999 * 110.48969 * 98.42784 * 5 3 2 35 35 H 1.08997 * 110.72158 * 279.57876 * 6 5 3 36 36 H 1.09009 * 110.92480 * 156.29399 * 6 5 3 37 37 H 1.08996 * 110.48683 * 203.40384 * 7 6 5 38 38 H 1.09002 * 110.48610 * 80.76555 * 7 6 5 39 39 H 0.96994 * 120.00057 * 334.99750 * 10 8 3 40 40 H 1.09000 * 109.47169 * 299.99909 * 13 11 10 41 41 H 1.09003 * 109.47357 * 59.99810 * 13 11 10 42 42 H 0.97002 * 120.00416 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.00217 * 359.97438 * 25 24 14 44 44 H 1.08003 * 120.00231 * 180.23030 * 26 25 24 45 45 H 1.07996 * 120.00232 * 179.72209 * 27 26 25 46 46 H 1.08002 * 119.99767 * 179.97438 * 28 27 26 47 47 H 1.08003 * 119.99835 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3460 2.0096 0.5012 5 6 2.2734 1.7667 -1.4484 6 6 3.6103 2.5455 -1.3612 7 6 4.4230 1.7171 -0.3353 8 6 3.3762 1.2743 0.7077 9 1 3.5960 0.2633 1.0507 10 7 3.3749 2.2012 1.8422 11 6 4.2132 1.9996 2.8780 12 8 4.9683 1.0506 2.8712 13 6 4.2115 2.9527 4.0453 14 6 5.2474 2.4990 5.0757 15 1 6.2207 2.4030 4.5945 16 6 4.8365 1.1669 5.6482 17 1 3.7959 0.8780 5.6505 18 6 5.7890 0.3170 6.1690 19 7 5.4445 -0.8835 6.5809 20 14 7.5691 0.8705 6.2894 21 1 7.7642 1.6404 7.5441 22 1 8.4581 -0.3189 6.2951 23 1 7.8999 1.7302 5.1246 24 6 5.3331 3.5170 6.1837 25 6 4.1941 3.8816 6.8769 26 6 4.2735 4.8118 7.8963 27 6 5.4901 5.3851 8.2157 28 6 6.6283 5.0242 7.5190 29 6 6.5498 4.0899 6.5034 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.3757 0.9065 -2.1100 34 1 1.4719 2.4204 -1.7923 35 1 3.4434 3.5582 -0.9944 36 1 4.1136 2.5644 -2.3279 37 1 5.1896 2.3350 0.1322 38 1 4.8728 0.8488 -0.8168 39 1 2.7708 2.9600 1.8478 40 1 4.4603 3.9550 3.6964 41 1 3.2230 2.9629 4.5047 42 1 6.1145 -1.4813 6.9477 43 1 3.2427 3.4373 6.6242 44 1 3.3842 5.0940 8.4404 45 1 5.5514 6.1151 9.0092 46 1 7.5788 5.4724 7.7682 47 1 7.4390 3.8083 5.9588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452998876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:11 Heat of formation + Delta-G solvation = -63.720558 kcal Electronic energy + Delta-G solvation = -26897.865644 eV Core-core repulsion = 23238.182793 eV Total energy + Delta-G solvation = -3659.682851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.84456 -38.80346 -38.05921 -36.08450 -34.09766 -33.05368 -31.63832 -30.24783 -29.22515 -28.35621 -27.73373 -26.25480 -25.38044 -22.63101 -21.93082 -21.17992 -20.58760 -19.81382 -19.11914 -17.06709 -16.94459 -16.70607 -16.18337 -15.56410 -15.41046 -14.71999 -14.67476 -14.43664 -14.27532 -14.10528 -13.81435 -13.68056 -13.00707 -12.79860 -12.57111 -12.52988 -12.33623 -12.08730 -11.97733 -11.80354 -11.53046 -11.40820 -11.16097 -11.05467 -10.75036 -10.72930 -10.69548 -10.57149 -10.34526 -9.86284 -9.76744 -9.57026 -9.15760 -8.92382 -8.57958 -8.42111 -8.21545 -7.79480 -5.95518 -3.91550 2.07478 2.14136 3.35194 3.43203 3.46410 3.47872 3.50222 3.98372 4.41370 4.51211 4.55000 4.57512 4.85520 5.04213 5.19823 5.22134 5.29256 5.38817 5.44535 5.50822 5.53322 5.53825 5.57491 5.61862 5.67199 5.69145 5.76538 5.84207 5.94166 5.99728 6.05928 6.10172 6.18736 6.21376 6.25707 6.32458 6.58955 6.69599 6.81790 6.91572 7.05674 7.13144 7.16158 7.25200 7.60074 7.71785 7.82613 8.05121 8.55508 9.02611 9.05787 9.67568 11.17698 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.003684 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.540800 B = 7597.890621 C = 8184.349684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.079 3.921 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.130 4.130 8 C 0.143 3.857 9 H 0.103 0.897 10 N -0.741 5.741 11 C 0.514 3.486 12 O -0.495 6.495 13 C -0.114 4.114 14 C 0.048 3.952 15 H 0.054 0.946 16 C -0.481 4.481 17 H 0.071 0.929 18 C 0.083 3.917 19 N -0.897 5.897 20 Si 0.868 3.132 21 H -0.273 1.273 22 H -0.293 1.293 23 H -0.263 1.263 24 C -0.037 4.037 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.151 4.151 28 C -0.122 4.122 29 C -0.142 4.142 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.390 0.610 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.262 0.738 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 11.325 -12.414 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.021 3.979 4 H 0.086 0.914 5 C -0.182 4.182 6 C -0.160 4.160 7 C -0.169 4.169 8 C 0.037 3.963 9 H 0.121 0.879 10 N -0.397 5.397 11 C 0.300 3.700 12 O -0.366 6.366 13 C -0.154 4.154 14 C 0.029 3.971 15 H 0.072 0.928 16 C -0.518 4.518 17 H 0.089 0.911 18 C -0.120 4.120 19 N -0.535 5.535 20 Si 0.697 3.303 21 H -0.198 1.198 22 H -0.220 1.220 23 H -0.188 1.188 24 C -0.038 4.038 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.169 4.169 28 C -0.140 4.140 29 C -0.160 4.160 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.224 0.776 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.901 10.231 -12.302 17.425 hybrid contribution 0.393 0.670 0.299 0.832 sum -6.509 10.901 -12.003 17.472 Atomic orbital electron populations 1.22783 0.81204 1.02816 0.99724 1.87987 1.19518 1.27170 1.94915 1.23062 0.94604 0.84899 0.95381 0.91409 1.22880 0.98001 1.00523 0.96825 1.22461 0.95284 0.98713 0.99501 1.22732 0.97766 1.00247 0.96145 1.21363 0.92418 0.96164 0.86315 0.87897 1.46224 1.43018 1.30094 1.20344 1.20815 0.79869 0.86685 0.82615 1.90758 1.38452 1.29351 1.77993 1.21608 1.02633 0.96621 0.94582 1.18268 0.96284 0.93214 0.89337 0.92756 1.20598 0.95560 0.97077 1.38577 0.91072 1.24868 0.98281 0.94358 0.94459 1.69883 1.34272 1.06967 1.42394 0.87050 0.86111 0.78150 0.79021 1.19838 1.21962 1.18782 1.20784 0.92216 0.92508 0.98300 1.20927 0.98817 0.96911 0.95913 1.21044 0.97137 0.98061 0.98000 1.20852 0.93242 1.01893 1.00941 1.20963 0.97756 0.98510 0.96781 1.21086 0.97867 0.98018 0.99046 0.94297 0.93942 0.89630 0.90275 0.91515 0.91442 0.91331 0.90728 0.90713 0.77648 0.91265 0.89815 0.92842 0.86378 0.87156 0.87366 0.87323 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.85 101.05 1.10 1.40 16 2 O -0.38 -5.01 10.26 -35.23 -0.36 -5.37 16 3 C 0.08 0.91 3.14 -25.61 -0.08 0.83 16 4 H 0.07 0.69 7.29 -51.93 -0.38 0.31 16 5 C -0.14 -1.34 6.56 -25.03 -0.16 -1.50 16 6 C -0.12 -1.14 6.91 -24.70 -0.17 -1.31 16 7 C -0.13 -1.63 6.54 -25.07 -0.16 -1.79 16 8 C 0.14 2.05 3.06 -66.81 -0.20 1.85 16 9 H 0.10 1.89 7.38 -51.93 -0.38 1.50 16 10 N -0.74 -10.85 5.03 -52.72 -0.27 -11.11 16 11 C 0.51 10.02 7.57 -10.98 -0.08 9.94 16 12 O -0.49 -12.29 14.64 5.56 0.08 -12.21 16 13 C -0.11 -2.11 4.84 -27.88 -0.13 -2.24 16 14 C 0.05 1.11 1.24 -92.92 -0.12 1.00 16 15 H 0.05 1.35 5.26 -51.93 -0.27 1.08 16 16 C -0.48 -13.41 7.19 -34.44 -0.25 -13.66 16 17 H 0.07 2.15 8.05 -52.49 -0.42 1.73 16 18 C 0.08 2.46 5.47 -17.82 -0.10 2.37 16 19 N -0.90 -28.48 13.96 55.43 0.77 -27.70 16 20 Si 0.87 22.83 24.76 -169.99 -4.21 18.62 16 21 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 23 H -0.26 -6.61 5.95 56.52 0.34 -6.27 16 24 C -0.04 -0.79 4.30 -104.63 -0.45 -1.24 16 25 C -0.11 -2.06 8.94 -39.59 -0.35 -2.42 16 26 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 27 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 28 C -0.12 -2.15 10.05 -39.59 -0.40 -2.55 16 29 C -0.14 -2.87 8.15 -39.59 -0.32 -3.19 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.07 1.02 8.04 -51.93 -0.42 0.61 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.39 4.35 8.32 -40.82 -0.34 4.01 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.44 7.33 -51.93 -0.38 1.06 16 42 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 43 H 0.12 2.17 7.37 -52.49 -0.39 1.78 16 44 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 45 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.11 2.20 6.76 -52.48 -0.35 1.85 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -34.79 375.17 -8.62 -43.41 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.61 Total: 6.62 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.69 Total: -17.90 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.51 Total: -38.82 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.28 Total: -17.58 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.21 Total: 18.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.79 -8.62 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452998876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.309 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds