Wall clock time and date at job start Tue Mar 31 2020 12:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99734 * 2 1 4 4 H 1.09001 * 110.01837 * 29.29666 * 3 2 1 5 5 C 1.54266 * 110.02987 * 267.90664 * 3 2 1 6 6 C 1.54960 * 104.16041 * 217.13766 * 5 3 2 7 7 C 1.54896 * 102.77604 * 37.88899 * 6 5 3 8 8 C 1.53872 * 110.02979 * 150.69149 * 3 2 1 9 9 H 1.09001 * 110.03635 * 0.02562 * 8 3 2 10 10 N 1.46502 * 110.03086 * 238.56623 * 8 3 2 11 11 C 1.34778 * 119.99769 * 155.00356 * 10 8 3 12 12 O 1.21277 * 120.00432 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99747 * 180.02562 * 11 10 8 14 14 C 1.52998 * 109.46993 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47424 * 54.99643 * 14 13 11 16 16 C 1.50706 * 109.47074 * 294.99759 * 14 13 11 17 17 H 1.07994 * 119.99957 * 334.72478 * 16 14 13 18 18 C 1.37872 * 120.00003 * 154.72576 * 16 14 13 19 19 N 1.31509 * 120.00134 * 184.85717 * 18 16 14 20 20 Si 1.86803 * 119.99999 * 4.85329 * 18 16 14 21 21 H 1.48498 * 109.46993 * 84.63912 * 20 18 16 22 22 H 1.48501 * 109.47205 * 204.63883 * 20 18 16 23 23 H 1.48500 * 109.46987 * 324.63784 * 20 18 16 24 24 C 1.50700 * 109.46990 * 174.99982 * 14 13 11 25 25 C 1.38231 * 120.00161 * 55.27691 * 24 14 13 26 26 C 1.38234 * 120.00190 * 179.76734 * 25 24 14 27 27 C 1.38234 * 120.00024 * 0.50245 * 26 25 24 28 28 C 1.38239 * 119.99506 * 359.75056 * 27 26 25 29 29 C 1.38226 * 120.00185 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47381 * 60.00373 * 1 2 3 31 31 H 1.09004 * 109.47287 * 300.00155 * 1 2 3 32 32 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 33 33 H 1.09001 * 110.48919 * 335.78719 * 5 3 2 34 34 H 1.08999 * 110.48969 * 98.42784 * 5 3 2 35 35 H 1.08997 * 110.72158 * 279.57876 * 6 5 3 36 36 H 1.09009 * 110.92480 * 156.29399 * 6 5 3 37 37 H 1.08996 * 110.48683 * 203.40384 * 7 6 5 38 38 H 1.09002 * 110.48610 * 80.76555 * 7 6 5 39 39 H 0.96994 * 120.00057 * 334.99750 * 10 8 3 40 40 H 1.09000 * 109.47169 * 299.99909 * 13 11 10 41 41 H 1.09003 * 109.47357 * 59.99810 * 13 11 10 42 42 H 0.97002 * 120.00416 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.00217 * 359.97438 * 25 24 14 44 44 H 1.08003 * 120.00231 * 180.23030 * 26 25 24 45 45 H 1.07996 * 120.00232 * 179.72209 * 27 26 25 46 46 H 1.08002 * 119.99767 * 179.97438 * 28 27 26 47 47 H 1.08003 * 119.99835 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3460 2.0096 0.5012 5 6 2.2734 1.7667 -1.4484 6 6 3.6103 2.5455 -1.3612 7 6 4.4230 1.7171 -0.3353 8 6 3.3762 1.2743 0.7077 9 1 3.5960 0.2633 1.0507 10 7 3.3749 2.2012 1.8422 11 6 4.2132 1.9996 2.8780 12 8 4.9683 1.0506 2.8712 13 6 4.2115 2.9527 4.0453 14 6 5.2474 2.4990 5.0757 15 1 6.2207 2.4030 4.5945 16 6 4.8365 1.1669 5.6482 17 1 3.7959 0.8780 5.6505 18 6 5.7890 0.3170 6.1690 19 7 5.4445 -0.8835 6.5809 20 14 7.5691 0.8705 6.2894 21 1 7.7642 1.6404 7.5441 22 1 8.4581 -0.3189 6.2951 23 1 7.8999 1.7302 5.1246 24 6 5.3331 3.5170 6.1837 25 6 4.1941 3.8816 6.8769 26 6 4.2735 4.8118 7.8963 27 6 5.4901 5.3851 8.2157 28 6 6.6283 5.0242 7.5190 29 6 6.5498 4.0899 6.5034 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.3757 0.9065 -2.1100 34 1 1.4719 2.4204 -1.7923 35 1 3.4434 3.5582 -0.9944 36 1 4.1136 2.5644 -2.3279 37 1 5.1896 2.3350 0.1322 38 1 4.8728 0.8488 -0.8168 39 1 2.7708 2.9600 1.8478 40 1 4.4603 3.9550 3.6964 41 1 3.2230 2.9629 4.5047 42 1 6.1145 -1.4813 6.9477 43 1 3.2427 3.4373 6.6242 44 1 3.3842 5.0940 8.4404 45 1 5.5514 6.1151 9.0092 46 1 7.5788 5.4724 7.7682 47 1 7.4390 3.8083 5.9588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452998876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:11 Heat of formation + Delta-G solvation = -87.738377 kcal Electronic energy + Delta-G solvation = -26898.907135 eV Core-core repulsion = 23238.182793 eV Total energy + Delta-G solvation = -3660.724342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.13910 -40.16390 -39.39101 -37.14585 -35.85243 -34.39766 -33.70822 -31.65016 -30.62357 -29.23661 -28.97395 -27.64053 -26.68027 -24.31443 -23.34735 -22.28138 -21.68079 -21.10757 -20.67803 -19.05295 -18.29081 -17.88360 -17.46070 -16.83301 -16.58617 -16.33866 -16.11280 -15.69268 -15.53611 -15.32680 -15.21244 -14.81184 -14.72814 -14.42849 -14.17105 -13.94949 -13.63277 -13.41905 -13.27836 -13.01162 -12.89719 -12.67307 -12.52467 -12.28740 -12.12561 -11.99734 -11.90080 -11.80967 -11.76615 -11.53317 -11.46963 -11.07915 -10.82173 -10.67661 -10.45090 -9.90916 -9.63717 -9.31133 -8.23942 -6.20046 0.65427 0.71627 1.28006 1.31958 1.37258 1.92641 2.19904 2.36892 2.97076 3.06027 3.20037 3.49478 3.65279 3.95961 4.08861 4.09182 4.22934 4.29033 4.29684 4.39305 4.41529 4.45238 4.49398 4.55800 4.56398 4.60936 4.67353 4.74015 4.81713 4.85256 4.85594 4.90982 4.99889 5.08475 5.17410 5.18946 5.22352 5.36776 5.37579 5.38440 5.64983 5.69762 5.75020 5.80539 6.00129 6.28453 6.31366 6.33186 6.75403 6.78648 7.41598 7.56968 8.93521 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.003684 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.540800 B = 7597.890621 C = 8184.349684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.081 3.919 4 H 0.088 0.912 5 C -0.134 4.134 6 C -0.110 4.110 7 C -0.130 4.130 8 C 0.136 3.864 9 H 0.051 0.949 10 N -0.717 5.717 11 C 0.509 3.491 12 O -0.561 6.561 13 C -0.109 4.109 14 C 0.050 3.950 15 H 0.031 0.969 16 C -0.460 4.460 17 H 0.032 0.968 18 C 0.017 3.983 19 N -0.954 5.954 20 Si 0.922 3.078 21 H -0.259 1.259 22 H -0.301 1.301 23 H -0.251 1.251 24 C -0.061 4.061 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.141 4.141 28 C -0.124 4.124 29 C -0.162 4.162 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.412 0.588 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.258 0.742 43 H 0.117 0.883 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.138 0.862 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 15.712 -12.834 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.023 3.977 4 H 0.106 0.894 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.169 4.169 8 C 0.030 3.970 9 H 0.069 0.931 10 N -0.373 5.373 11 C 0.297 3.703 12 O -0.438 6.438 13 C -0.149 4.149 14 C 0.031 3.969 15 H 0.049 0.951 16 C -0.498 4.498 17 H 0.051 0.949 18 C -0.179 4.179 19 N -0.596 5.596 20 Si 0.749 3.251 21 H -0.184 1.184 22 H -0.229 1.229 23 H -0.176 1.176 24 C -0.062 4.062 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.159 4.159 28 C -0.142 4.142 29 C -0.181 4.181 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.249 0.751 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.135 0.865 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.156 0.844 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.992 14.697 -12.759 21.039 hybrid contribution 0.587 -0.609 0.428 0.948 sum -7.404 14.088 -12.331 20.133 Atomic orbital electron populations 1.22972 0.79365 1.03673 1.01045 1.87951 1.21660 1.28338 1.95187 1.23106 0.92858 0.84878 0.96855 0.89442 1.22841 0.98823 1.00784 0.94757 1.22439 0.94572 0.98688 0.99025 1.22677 0.97335 1.00373 0.96530 1.21458 0.95537 0.93480 0.86516 0.93085 1.45933 1.41742 1.30420 1.19191 1.21111 0.79608 0.85916 0.83657 1.90738 1.41441 1.32047 1.79531 1.21559 1.02060 0.98040 0.93231 1.18100 0.96187 0.91729 0.90895 0.95065 1.20833 0.93445 0.99317 1.36181 0.94931 1.25643 1.02402 0.94555 0.95286 1.70040 1.35321 1.08576 1.45619 0.86184 0.81531 0.77553 0.79863 1.18358 1.22885 1.17572 1.20482 0.93710 0.93752 0.98248 1.21040 0.98155 0.97869 0.96838 1.21432 0.98921 0.96591 0.96882 1.21348 0.92291 1.01442 1.00786 1.21330 0.99756 0.97455 0.95643 1.21190 0.97104 0.99408 1.00364 0.91791 0.93661 0.89224 0.90769 0.88458 0.89772 0.89672 0.92237 0.91620 0.75055 0.87277 0.88363 0.93295 0.86506 0.83846 0.83437 0.84410 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 113.37 1.23 1.69 16 2 O -0.41 -10.93 10.26 -148.98 -1.53 -12.45 16 3 C 0.08 1.78 3.14 31.32 0.10 1.88 16 4 H 0.09 1.54 7.29 -2.39 -0.02 1.52 16 5 C -0.13 -2.12 6.56 31.69 0.21 -1.91 16 6 C -0.11 -1.76 6.91 31.91 0.22 -1.54 16 7 C -0.13 -3.30 6.54 31.67 0.21 -3.09 16 8 C 0.14 4.02 3.06 45.71 0.14 4.16 16 9 H 0.05 2.06 7.38 -2.39 -0.02 2.04 16 10 N -0.72 -21.02 5.03 -439.10 -2.21 -23.22 16 11 C 0.51 20.55 7.57 87.66 0.66 21.22 16 12 O -0.56 -29.83 14.64 -3.02 -0.04 -29.87 16 13 C -0.11 -4.01 4.84 29.85 0.14 -3.86 16 14 C 0.05 2.36 1.24 -12.28 -0.02 2.34 16 15 H 0.03 1.60 5.26 -2.39 -0.01 1.59 16 16 C -0.46 -26.90 7.19 25.60 0.18 -26.72 16 17 H 0.03 2.09 8.05 -2.91 -0.02 2.07 16 18 C 0.02 1.07 5.47 84.65 0.46 1.53 16 19 N -0.95 -64.17 13.96 21.44 0.30 -63.87 16 20 Si 0.92 49.06 24.76 68.60 1.70 50.76 16 21 H -0.26 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.30 -16.24 7.11 99.48 0.71 -15.53 16 23 H -0.25 -12.71 5.95 99.48 0.59 -12.11 16 24 C -0.06 -2.54 4.30 -19.87 -0.09 -2.62 16 25 C -0.12 -4.42 8.94 22.27 0.20 -4.22 16 26 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 27 C -0.14 -3.94 10.05 22.27 0.22 -3.72 16 28 C -0.12 -3.90 10.05 22.27 0.22 -3.68 16 29 C -0.16 -6.28 8.15 22.27 0.18 -6.10 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.04 0.77 8.10 -2.38 -0.02 0.75 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.41 8.40 8.32 -92.71 -0.77 7.62 16 40 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.10 3.31 7.33 -2.39 -0.02 3.30 16 42 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 43 H 0.12 4.19 7.37 -2.91 -0.02 4.16 16 44 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 45 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 46 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 47 H 0.10 3.99 6.76 -2.91 -0.02 3.98 16 Total: -1.00 -83.62 375.17 2.80 -80.83 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.07 Total: 25.87 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 4.51 Total: -28.02 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -1.91 Total: -87.10 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -1.57 Total: -42.33 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.70 Total: 50.76 kcal Total: -83.62 2.80 -80.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452998876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.912 kcal (2) G-P(sol) polarization free energy of solvation -83.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds