Wall clock time and date at job start Tue Mar 31 2020 12:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99986 * 2 1 4 4 C 1.53004 * 109.47415 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46908 * 65.00257 * 4 3 2 6 6 C 1.37097 * 120.00358 * 90.57505 * 5 4 3 7 7 H 1.08000 * 120.00188 * 212.07886 * 6 5 4 8 8 C 1.38951 * 119.99736 * 32.07472 * 6 5 4 9 9 N 1.31413 * 119.99826 * 215.37281 * 8 6 5 10 10 Si 1.86797 * 120.00201 * 35.37772 * 8 6 5 11 11 H 1.48494 * 109.47359 * 95.45220 * 10 8 6 12 12 H 1.48502 * 109.46717 * 335.45311 * 10 8 6 13 13 H 1.48497 * 109.47186 * 215.45428 * 10 8 6 14 14 C 1.34780 * 120.00007 * 270.57477 * 5 4 3 15 15 O 1.21293 * 119.99825 * 4.27533 * 14 5 4 16 16 C 1.50699 * 120.00506 * 184.27241 * 14 5 4 17 17 C 1.52990 * 109.47325 * 185.93241 * 16 14 5 18 18 H 1.09000 * 109.67950 * 305.00009 * 17 16 14 19 19 C 1.53328 * 109.67957 * 184.48142 * 17 16 14 20 20 C 1.52740 * 108.38292 * 170.40796 * 19 17 16 21 21 C 1.50629 * 110.59046 * 51.10408 * 20 19 17 22 22 C 1.38910 * 117.75259 * 162.26685 * 21 20 19 23 23 C 1.37940 * 120.54153 * 179.76225 * 22 21 20 24 24 C 1.38268 * 119.77055 * 359.96390 * 23 22 21 25 25 C 1.37927 * 119.77275 * 0.12114 * 24 23 22 26 26 C 1.37667 * 122.56290 * 342.22622 * 21 20 19 27 27 C 1.50644 * 122.57658 * 0.68195 * 26 21 20 28 28 H 1.09001 * 109.47377 * 59.99798 * 1 2 3 29 29 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47042 * 299.99954 * 1 2 3 31 31 H 1.09006 * 109.47216 * 60.00204 * 3 2 1 32 32 H 1.09000 * 109.47297 * 300.00349 * 3 2 1 33 33 H 1.08993 * 109.46947 * 305.00319 * 4 3 2 34 34 H 1.09000 * 109.47453 * 185.00110 * 4 3 2 35 35 H 0.96993 * 119.99783 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46802 * 305.94051 * 16 14 5 37 37 H 1.09004 * 109.46738 * 65.93109 * 16 14 5 38 38 H 1.09002 * 109.68625 * 290.13117 * 19 17 16 39 39 H 1.09000 * 109.68125 * 50.64962 * 19 17 16 40 40 H 1.09006 * 109.24736 * 171.38966 * 20 19 17 41 41 H 1.09001 * 109.25411 * 290.81531 * 20 19 17 42 42 H 1.07994 * 119.73412 * 359.78817 * 22 21 20 43 43 H 1.08004 * 120.11314 * 179.97438 * 23 22 21 44 44 H 1.08007 * 120.10786 * 180.09750 * 24 23 22 45 45 H 1.08003 * 119.72395 * 180.02562 * 25 24 23 46 46 H 1.08996 * 109.29288 * 221.98951 * 27 26 21 47 47 H 1.08997 * 109.22121 * 102.54958 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2777 1.3478 -2.3367 7 1 4.0987 0.9793 -3.3359 8 6 4.8139 2.6160 -2.1495 9 7 4.4893 3.5936 -2.9655 10 14 5.9962 2.9311 -0.7381 11 1 7.3934 2.8098 -1.2262 12 1 5.7595 1.9351 0.3376 13 1 5.7757 4.2989 -0.2036 14 6 4.0837 -0.7761 -1.3392 15 8 3.7430 -1.4734 -0.4071 16 6 4.6278 -1.4090 -2.5940 17 6 4.5078 -2.9307 -2.4912 18 1 5.0009 -3.2773 -1.5830 19 6 5.1608 -3.5841 -3.7149 20 6 5.2401 -5.0899 -3.4721 21 6 3.8972 -5.6310 -3.0565 22 6 3.6917 -7.0009 -3.1596 23 6 2.4852 -7.5585 -2.7903 24 6 1.4719 -6.7480 -2.3127 25 6 1.6735 -5.3873 -2.2113 26 6 2.8865 -4.8235 -2.5856 27 6 3.0337 -3.3295 -2.4604 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8514 0.5683 0.8408 34 1 3.9785 2.1765 0.0889 35 1 4.8634 4.4789 -2.8346 36 1 4.0590 -1.0568 -3.4546 37 1 5.6758 -1.1345 -2.7143 38 1 4.5588 -3.3864 -4.6018 39 1 6.1638 -3.1809 -3.8548 40 1 5.5592 -5.5855 -4.3891 41 1 5.9672 -5.2893 -2.6849 42 1 4.4830 -7.6348 -3.5316 43 1 2.3328 -8.6244 -2.8737 44 1 0.5257 -7.1790 -2.0205 45 1 0.8815 -4.7550 -1.8377 46 1 2.5923 -3.0017 -1.5193 47 1 2.5135 -2.8471 -3.2880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457186394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:44 Heat of formation + Delta-G solvation = -60.684740 kcal Electronic energy + Delta-G solvation = -27449.900011 eV Core-core repulsion = 23790.348804 eV Total energy + Delta-G solvation = -3659.551208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.94692 -38.76435 -37.10131 -36.02950 -34.66591 -32.46409 -31.99398 -31.16500 -29.54897 -28.80839 -26.61349 -25.67809 -24.69781 -23.34862 -22.43299 -21.93746 -21.19228 -19.01907 -18.75636 -16.88576 -16.34739 -16.14328 -15.65782 -15.52052 -15.33911 -14.96644 -14.62713 -14.48310 -14.20157 -13.90617 -13.78483 -13.33549 -13.11674 -12.99830 -12.69313 -12.47200 -12.27341 -12.11200 -11.99077 -11.67610 -11.51922 -11.20850 -11.14367 -11.13618 -10.94260 -10.76966 -10.51968 -10.39665 -10.25024 -10.02568 -9.88648 -9.80664 -9.13315 -8.97516 -8.59011 -8.36735 -8.25466 -7.75932 -6.59255 -3.95163 1.52346 1.56396 3.06764 3.21301 3.27970 3.90960 3.92081 4.11303 4.41112 4.47370 4.83803 4.89944 4.94711 5.12518 5.15594 5.26118 5.36300 5.45175 5.56417 5.62394 5.65928 5.72006 5.80574 5.89277 5.92120 5.97287 5.99355 6.03601 6.05157 6.13099 6.15754 6.23000 6.27054 6.27162 6.31242 6.40730 6.44252 6.56000 6.63837 6.68345 6.76022 6.81812 6.93354 6.99573 7.22088 7.34292 7.81125 8.09128 8.30759 9.01040 9.48216 9.87498 10.52450 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.004035 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.599033 B = 6937.494649 C = 8148.042720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.461 5.461 6 C -0.353 4.353 7 H 0.102 0.898 8 C 0.074 3.926 9 N -0.840 5.840 10 Si 0.846 3.154 11 H -0.278 1.278 12 H -0.255 1.255 13 H -0.282 1.282 14 C 0.480 3.520 15 O -0.579 6.579 16 C -0.114 4.114 17 C -0.067 4.067 18 H 0.077 0.923 19 C -0.117 4.117 20 C -0.078 4.078 21 C -0.080 4.080 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.057 4.057 27 C -0.081 4.081 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.274 0.726 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.014 -12.656 -0.120 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C -0.028 4.028 4 C -0.004 4.004 5 N -0.182 5.182 6 C -0.479 4.479 7 H 0.119 0.881 8 C -0.135 4.135 9 N -0.474 5.474 10 Si 0.671 3.329 11 H -0.204 1.204 12 H -0.179 1.179 13 H -0.208 1.208 14 C 0.270 3.730 15 O -0.463 6.463 16 C -0.154 4.154 17 C -0.086 4.086 18 H 0.095 0.905 19 C -0.154 4.154 20 C -0.115 4.115 21 C -0.080 4.080 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.057 4.057 27 C -0.117 4.117 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.117 0.883 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.068 -12.938 0.266 13.299 hybrid contribution 0.379 0.807 0.512 1.028 sum -2.689 -12.131 0.778 12.450 Atomic orbital electron populations 1.22631 0.83205 1.01695 0.98956 1.88147 1.17556 1.27253 1.95107 1.22987 0.95457 0.84901 0.99476 1.21601 0.91402 0.98051 0.89372 1.43604 1.58609 1.04799 1.11237 1.18966 1.44184 0.97419 0.87298 0.88058 1.25241 0.96534 0.94901 0.96823 1.70000 1.37422 1.00861 1.39082 0.87492 0.83346 0.78138 0.83959 1.20392 1.17911 1.20810 1.20302 0.81124 0.82413 0.89194 1.90538 1.53196 1.61917 1.40620 1.21447 1.02539 0.93570 0.97838 1.20877 0.95533 0.94312 0.97899 0.90497 1.21646 1.01153 0.93990 0.98621 1.20458 0.93735 0.96374 1.00922 1.19676 0.95855 0.93062 0.99375 1.21105 0.97367 0.94500 1.01232 1.20959 0.93971 0.99302 1.00905 1.21012 0.98943 0.93897 1.00598 1.21219 0.97270 0.95012 1.00381 1.19875 0.92893 0.96422 0.96526 1.20666 0.97483 0.89738 1.03839 0.94770 0.90494 0.95188 0.94324 0.92507 0.90902 0.90731 0.91603 0.90020 0.89736 0.91778 0.91369 0.91246 0.90834 0.86657 0.86663 0.86572 0.86268 0.88312 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.47 9.25 -48.63 -0.45 -7.92 16 3 C 0.05 1.00 6.28 37.16 0.23 1.23 16 4 C 0.12 2.65 4.23 -4.04 -0.02 2.63 16 5 N -0.46 -10.89 2.23 -114.81 -0.26 -11.14 16 6 C -0.35 -8.83 9.05 -14.93 -0.14 -8.96 16 7 H 0.10 2.65 6.89 -52.49 -0.36 2.29 16 8 C 0.07 1.86 5.06 -17.47 -0.09 1.77 16 9 N -0.84 -22.20 13.96 55.50 0.77 -21.43 16 10 Si 0.85 19.08 26.17 -169.99 -4.45 14.63 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.25 -5.69 5.78 56.52 0.33 -5.36 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 14 C 0.48 10.87 6.98 -10.98 -0.08 10.79 16 15 O -0.58 -14.02 12.82 -7.86 -0.10 -14.12 16 16 C -0.11 -2.16 4.04 -27.89 -0.11 -2.27 16 17 C -0.07 -1.12 1.84 -90.59 -0.17 -1.28 16 18 H 0.08 1.39 7.83 -51.93 -0.41 0.99 16 19 C -0.12 -1.58 5.28 -26.70 -0.14 -1.72 16 20 C -0.08 -0.96 5.67 -28.05 -0.16 -1.12 16 21 C -0.08 -1.11 5.74 -104.62 -0.60 -1.71 16 22 C -0.12 -1.54 9.61 -39.44 -0.38 -1.92 16 23 C -0.13 -1.58 10.05 -39.68 -0.40 -1.98 16 24 C -0.13 -1.57 10.05 -39.68 -0.40 -1.97 16 25 C -0.12 -1.72 9.61 -39.45 -0.38 -2.10 16 26 C -0.06 -0.88 5.74 -104.61 -0.60 -1.48 16 27 C -0.08 -1.35 4.63 -28.04 -0.13 -1.48 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.64 7.50 -51.93 -0.39 1.25 16 34 H 0.07 1.63 3.89 -51.93 -0.20 1.43 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.08 1.55 7.18 -51.93 -0.37 1.17 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 40 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.12 1.16 8.05 -52.49 -0.42 0.74 16 43 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.12 1.60 8.05 -52.48 -0.42 1.17 16 46 H 0.10 1.93 6.40 -51.93 -0.33 1.60 16 47 H 0.07 1.14 8.09 -51.93 -0.42 0.71 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -28.88 368.96 -8.97 -37.85 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.61 Total: 6.53 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.44 Total: -9.96 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.52 Total: -32.57 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.55 Total: -22.04 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.45 Total: 14.63 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.88 -8.97 -37.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457186394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.837 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds