Wall clock time and date at job start Tue Mar 31 2020 12:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99986 * 2 1 4 4 C 1.53004 * 109.47415 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46908 * 65.00257 * 4 3 2 6 6 C 1.37097 * 120.00358 * 90.57505 * 5 4 3 7 7 H 1.08000 * 120.00188 * 212.07886 * 6 5 4 8 8 C 1.38951 * 119.99736 * 32.07472 * 6 5 4 9 9 N 1.31413 * 119.99826 * 215.37281 * 8 6 5 10 10 Si 1.86797 * 120.00201 * 35.37772 * 8 6 5 11 11 H 1.48494 * 109.47359 * 95.45220 * 10 8 6 12 12 H 1.48502 * 109.46717 * 335.45311 * 10 8 6 13 13 H 1.48497 * 109.47186 * 215.45428 * 10 8 6 14 14 C 1.34780 * 120.00007 * 270.57477 * 5 4 3 15 15 O 1.21293 * 119.99825 * 4.27533 * 14 5 4 16 16 C 1.50699 * 120.00506 * 184.27241 * 14 5 4 17 17 C 1.52990 * 109.47325 * 185.93241 * 16 14 5 18 18 H 1.09000 * 109.67950 * 305.00009 * 17 16 14 19 19 C 1.53328 * 109.67957 * 184.48142 * 17 16 14 20 20 C 1.52740 * 108.38292 * 170.40796 * 19 17 16 21 21 C 1.50629 * 110.59046 * 51.10408 * 20 19 17 22 22 C 1.38910 * 117.75259 * 162.26685 * 21 20 19 23 23 C 1.37940 * 120.54153 * 179.76225 * 22 21 20 24 24 C 1.38268 * 119.77055 * 359.96390 * 23 22 21 25 25 C 1.37927 * 119.77275 * 0.12114 * 24 23 22 26 26 C 1.37667 * 122.56290 * 342.22622 * 21 20 19 27 27 C 1.50644 * 122.57658 * 0.68195 * 26 21 20 28 28 H 1.09001 * 109.47377 * 59.99798 * 1 2 3 29 29 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47042 * 299.99954 * 1 2 3 31 31 H 1.09006 * 109.47216 * 60.00204 * 3 2 1 32 32 H 1.09000 * 109.47297 * 300.00349 * 3 2 1 33 33 H 1.08993 * 109.46947 * 305.00319 * 4 3 2 34 34 H 1.09000 * 109.47453 * 185.00110 * 4 3 2 35 35 H 0.96993 * 119.99783 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46802 * 305.94051 * 16 14 5 37 37 H 1.09004 * 109.46738 * 65.93109 * 16 14 5 38 38 H 1.09002 * 109.68625 * 290.13117 * 19 17 16 39 39 H 1.09000 * 109.68125 * 50.64962 * 19 17 16 40 40 H 1.09006 * 109.24736 * 171.38966 * 20 19 17 41 41 H 1.09001 * 109.25411 * 290.81531 * 20 19 17 42 42 H 1.07994 * 119.73412 * 359.78817 * 22 21 20 43 43 H 1.08004 * 120.11314 * 179.97438 * 23 22 21 44 44 H 1.08007 * 120.10786 * 180.09750 * 24 23 22 45 45 H 1.08003 * 119.72395 * 180.02562 * 25 24 23 46 46 H 1.08996 * 109.29288 * 221.98951 * 27 26 21 47 47 H 1.08997 * 109.22121 * 102.54958 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2777 1.3478 -2.3367 7 1 4.0987 0.9793 -3.3359 8 6 4.8139 2.6160 -2.1495 9 7 4.4893 3.5936 -2.9655 10 14 5.9962 2.9311 -0.7381 11 1 7.3934 2.8098 -1.2262 12 1 5.7595 1.9351 0.3376 13 1 5.7757 4.2989 -0.2036 14 6 4.0837 -0.7761 -1.3392 15 8 3.7430 -1.4734 -0.4071 16 6 4.6278 -1.4090 -2.5940 17 6 4.5078 -2.9307 -2.4912 18 1 5.0009 -3.2773 -1.5830 19 6 5.1608 -3.5841 -3.7149 20 6 5.2401 -5.0899 -3.4721 21 6 3.8972 -5.6310 -3.0565 22 6 3.6917 -7.0009 -3.1596 23 6 2.4852 -7.5585 -2.7903 24 6 1.4719 -6.7480 -2.3127 25 6 1.6735 -5.3873 -2.2113 26 6 2.8865 -4.8235 -2.5856 27 6 3.0337 -3.3295 -2.4604 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8514 0.5683 0.8408 34 1 3.9785 2.1765 0.0889 35 1 4.8634 4.4789 -2.8346 36 1 4.0590 -1.0568 -3.4546 37 1 5.6758 -1.1345 -2.7143 38 1 4.5588 -3.3864 -4.6018 39 1 6.1638 -3.1809 -3.8548 40 1 5.5592 -5.5855 -4.3891 41 1 5.9672 -5.2893 -2.6849 42 1 4.4830 -7.6348 -3.5316 43 1 2.3328 -8.6244 -2.8737 44 1 0.5257 -7.1790 -2.0205 45 1 0.8815 -4.7550 -1.8377 46 1 2.5923 -3.0017 -1.5193 47 1 2.5135 -2.8471 -3.2880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457186394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:43 Heat of formation + Delta-G solvation = -74.433419 kcal Electronic energy + Delta-G solvation = -27450.496199 eV Core-core repulsion = 23790.348804 eV Total energy + Delta-G solvation = -3660.147395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.18134 -40.36174 -38.62273 -37.33170 -36.44316 -33.96193 -33.55850 -32.43484 -31.05530 -29.93882 -27.99890 -27.11157 -26.56173 -24.56096 -23.87184 -22.97325 -22.50248 -20.68655 -20.13447 -18.66461 -17.95631 -17.49291 -17.13773 -17.05699 -16.59522 -16.32306 -16.09734 -16.00065 -15.55256 -15.34634 -15.14437 -14.67216 -14.54164 -14.33506 -14.05506 -13.85476 -13.72791 -13.65897 -13.41669 -13.02453 -12.77771 -12.70425 -12.69625 -12.41238 -12.33400 -12.24824 -12.00131 -11.96108 -11.65858 -11.53815 -11.33618 -11.08563 -10.97293 -10.53795 -10.13054 -9.67577 -9.58717 -9.35836 -8.55751 -5.93595 0.52851 0.54050 1.24917 1.38185 1.46171 2.08763 2.22634 2.66158 2.91065 2.95754 3.08505 3.75142 3.82235 4.00220 4.14550 4.18153 4.20752 4.26157 4.27674 4.32359 4.39261 4.47003 4.50743 4.53435 4.58424 4.61149 4.61963 4.67996 4.76073 4.79074 4.87458 4.91731 4.95744 5.03248 5.05234 5.13737 5.17855 5.21518 5.30953 5.43960 5.48819 5.58139 5.66491 5.69298 5.88862 6.12486 6.21679 6.31935 6.41184 7.06073 7.59069 8.01666 8.59666 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.004035 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.599033 B = 6937.494649 C = 8148.042720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.394 6.394 3 C 0.056 3.944 4 C 0.113 3.887 5 N -0.471 5.471 6 C -0.354 4.354 7 H 0.081 0.919 8 C 0.043 3.957 9 N -0.875 5.875 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.254 1.254 13 H -0.273 1.273 14 C 0.473 3.527 15 O -0.596 6.596 16 C -0.108 4.108 17 C -0.060 4.060 18 H 0.060 0.940 19 C -0.111 4.111 20 C -0.075 4.075 21 C -0.092 4.092 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.140 4.140 26 C -0.085 4.085 27 C -0.070 4.070 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.279 0.721 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.114 0.886 46 H 0.063 0.937 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 -14.575 -0.019 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C -0.022 4.022 4 C -0.011 4.011 5 N -0.192 5.192 6 C -0.480 4.480 7 H 0.098 0.902 8 C -0.164 4.164 9 N -0.510 5.510 10 Si 0.724 3.276 11 H -0.204 1.204 12 H -0.178 1.178 13 H -0.198 1.198 14 C 0.264 3.736 15 O -0.481 6.481 16 C -0.148 4.148 17 C -0.079 4.079 18 H 0.078 0.922 19 C -0.148 4.148 20 C -0.112 4.112 21 C -0.092 4.092 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.158 4.158 26 C -0.085 4.085 27 C -0.107 4.107 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.157 0.843 45 H 0.132 0.868 46 H 0.081 0.919 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.592 -14.855 0.374 15.084 hybrid contribution 0.121 1.331 0.485 1.422 sum -2.471 -13.524 0.859 13.774 Atomic orbital electron populations 1.22838 0.80771 1.03000 1.00270 1.88097 1.20324 1.27542 1.95353 1.22863 0.94073 0.85043 1.00178 1.21691 0.93127 0.97758 0.88519 1.43724 1.59049 1.05099 1.11351 1.18821 1.44519 0.97656 0.87027 0.90153 1.25681 0.97168 0.94560 0.98963 1.70035 1.38480 1.01441 1.41018 0.86632 0.81107 0.78359 0.81511 1.20430 1.17792 1.19783 1.20917 0.80498 0.82153 0.90078 1.90521 1.53764 1.62162 1.41636 1.21453 1.02407 0.95124 0.95796 1.20794 0.95624 0.92618 0.98846 0.92190 1.21606 1.01432 0.95020 0.96759 1.20491 0.93157 0.95173 1.02347 1.19926 0.96011 0.93946 0.99298 1.21452 0.98423 0.93968 1.00550 1.21388 0.93319 1.00851 0.99238 1.21319 1.00340 0.93052 1.00044 1.21340 0.97041 0.96248 1.01211 1.19835 0.94342 0.95398 0.98910 1.20431 0.97225 0.91500 1.01517 0.94447 0.89305 0.92740 0.91103 0.94131 0.91569 0.90580 0.91057 0.90426 0.89081 0.91669 0.89993 0.88572 0.90255 0.83851 0.83514 0.84263 0.86809 0.91888 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.39 -16.41 9.25 -136.17 -1.26 -17.67 16 3 C 0.06 2.25 6.28 71.98 0.45 2.71 16 4 C 0.11 5.03 4.23 86.38 0.37 5.39 16 5 N -0.47 -22.71 2.23 -635.53 -1.42 -24.13 16 6 C -0.35 -18.14 9.05 84.04 0.76 -17.38 16 7 H 0.08 4.38 6.89 -2.91 -0.02 4.36 16 8 C 0.04 2.17 5.06 84.93 0.43 2.60 16 9 N -0.87 -46.68 13.96 21.66 0.30 -46.38 16 10 Si 0.90 39.32 26.17 68.60 1.80 41.11 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.25 -10.96 5.78 99.48 0.58 -10.39 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 C 0.47 22.09 6.98 87.66 0.61 22.71 16 15 O -0.60 -29.86 12.82 9.74 0.12 -29.74 16 16 C -0.11 -4.22 4.04 29.84 0.12 -4.10 16 17 C -0.06 -2.03 1.84 -10.77 -0.02 -2.05 16 18 H 0.06 2.23 7.83 -2.39 -0.02 2.21 16 19 C -0.11 -2.89 5.28 30.62 0.16 -2.73 16 20 C -0.07 -1.69 5.67 29.74 0.17 -1.52 16 21 C -0.09 -2.43 5.74 -19.86 -0.11 -2.54 16 22 C -0.13 -2.74 9.61 22.36 0.21 -2.53 16 23 C -0.13 -2.67 10.05 22.21 0.22 -2.45 16 24 C -0.13 -3.00 10.05 22.20 0.22 -2.77 16 25 C -0.14 -4.02 9.61 22.36 0.21 -3.81 16 26 C -0.08 -2.63 5.74 -19.86 -0.11 -2.75 16 27 C -0.07 -2.46 4.63 29.74 0.14 -2.32 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.05 1.40 8.14 -2.38 -0.02 1.39 16 31 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 3.01 7.50 -2.39 -0.02 2.99 16 34 H 0.08 3.31 3.89 -2.39 -0.01 3.30 16 35 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 36 H 0.08 3.08 7.18 -2.39 -0.02 3.06 16 37 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 38 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 40 H 0.10 1.68 8.12 -2.38 -0.02 1.66 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.14 2.27 8.05 -2.91 -0.02 2.25 16 43 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 44 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 45 H 0.11 3.22 8.05 -2.91 -0.02 3.19 16 46 H 0.06 2.64 6.40 -2.39 -0.02 2.62 16 47 H 0.06 2.11 8.09 -2.39 -0.02 2.09 16 Total: -1.00 -63.31 368.96 5.45 -57.86 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.81 Total: 30.39 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.09 Total: -11.44 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -1.11 Total: -70.51 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -1.13 Total: -47.41 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.80 Total: 41.11 kcal Total: -63.31 5.45 -57.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457186394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.574 kcal (2) G-P(sol) polarization free energy of solvation -63.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds