Wall clock time and date at job start Tue Mar 31 2020 11:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99844 * 2 1 4 4 O 1.21282 * 119.99809 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00079 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47065 * 180.02562 * 5 3 2 7 7 H 1.09007 * 109.46578 * 305.36142 * 6 5 3 8 8 C 1.50699 * 109.47715 * 65.36095 * 6 5 3 9 9 H 1.08004 * 119.99472 * 34.61953 * 8 6 5 10 10 C 1.37873 * 120.00125 * 214.62240 * 8 6 5 11 11 N 1.31519 * 119.99817 * 186.44941 * 10 8 6 12 12 Si 1.86796 * 120.00173 * 6.44489 * 10 8 6 13 13 H 1.48508 * 109.46888 * 85.00926 * 12 10 8 14 14 H 1.48496 * 109.47232 * 205.00827 * 12 10 8 15 15 H 1.48499 * 109.47113 * 325.01515 * 12 10 8 16 16 C 1.50700 * 109.47000 * 185.36854 * 6 5 3 17 17 C 1.38243 * 119.99572 * 296.34968 * 16 6 5 18 18 C 1.38235 * 119.99398 * 179.81022 * 17 16 6 19 19 C 1.38227 * 120.00659 * 0.40201 * 18 17 16 20 20 C 1.38239 * 119.99603 * 359.85312 * 19 18 17 21 21 C 1.38234 * 120.00419 * 359.95637 * 20 19 18 22 22 C 1.46497 * 120.00201 * 180.02562 * 2 1 3 23 23 C 1.53174 * 109.54424 * 300.00058 * 22 2 1 24 24 C 1.53097 * 109.15987 * 176.84334 * 23 22 2 25 25 O 1.42895 * 109.41652 * 302.38956 * 24 23 22 26 26 C 1.42901 * 114.10024 * 61.16042 * 25 24 23 27 27 C 1.53096 * 109.41394 * 298.84206 * 26 25 24 28 28 H 1.09006 * 109.46824 * 269.99586 * 1 2 3 29 29 H 1.09001 * 109.47659 * 29.99420 * 1 2 3 30 30 H 1.08999 * 109.47374 * 150.00133 * 1 2 3 31 31 H 1.09011 * 109.46638 * 299.99215 * 5 3 2 32 32 H 1.08992 * 109.47291 * 59.99520 * 5 3 2 33 33 H 0.96996 * 119.99534 * 179.97438 * 11 10 8 34 34 H 1.07993 * 120.00114 * 0.02562 * 17 16 6 35 35 H 1.08002 * 119.99285 * 180.23207 * 18 17 16 36 36 H 1.08001 * 120.00708 * 179.83227 * 19 18 17 37 37 H 1.08001 * 119.99531 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.00213 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.61801 * 179.77245 * 22 2 1 40 40 H 1.09001 * 109.51908 * 296.74769 * 23 22 2 41 41 H 1.09005 * 109.52371 * 56.94285 * 23 22 2 42 42 H 1.09005 * 109.48018 * 62.37816 * 24 23 22 43 43 H 1.09005 * 109.47760 * 182.40821 * 24 23 22 44 44 H 1.09002 * 109.48569 * 178.85657 * 26 25 24 45 45 H 1.09003 * 109.48962 * 58.82763 * 26 25 24 46 46 H 1.09003 * 109.52028 * 297.70056 * 27 26 25 47 47 H 1.08998 * 109.51831 * 177.51276 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 1 3.0683 3.5248 0.8374 8 6 3.1553 3.6323 -1.2922 9 1 2.6754 3.3240 -2.2093 10 6 4.4774 4.0231 -1.3034 11 7 5.1182 4.1425 -2.4457 12 14 5.3586 4.3830 0.3039 13 1 5.8857 3.1170 0.8737 14 1 6.4837 5.3190 0.0527 15 1 4.4069 4.9990 1.2630 16 6 1.6308 4.9363 0.1333 17 6 0.7508 5.3320 -0.8566 18 6 0.0611 6.5235 -0.7323 19 6 0.2576 7.3233 0.3779 20 6 1.1416 6.9301 1.3652 21 6 1.8284 5.7368 1.2429 22 6 2.1975 -1.2687 -0.0006 23 6 1.8287 -2.0739 1.2492 24 6 2.5376 -3.4300 1.2005 25 8 2.1669 -4.1171 0.0037 26 6 2.5294 -3.4335 -1.1978 27 6 1.8202 -2.0775 -1.2455 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7584 2.5303 -0.8893 32 1 0.7590 2.5299 0.8907 33 1 6.0482 4.4178 -2.4535 34 1 0.5995 4.7086 -1.7254 35 1 -0.6293 6.8308 -1.5039 36 1 -0.2793 8.2556 0.4737 37 1 1.2954 7.5553 2.2324 38 1 2.5193 5.4298 2.0141 39 1 3.2697 -1.0722 -0.0046 40 1 2.1442 -1.5296 2.1393 41 1 0.7499 -2.2277 1.2782 42 1 3.6167 -3.2767 1.2123 43 1 2.2451 -4.0243 2.0662 44 1 2.2311 -4.0303 -2.0598 45 1 3.6084 -3.2802 -1.2176 46 1 0.7413 -2.2314 -1.2668 47 1 2.1296 -1.5360 -2.1394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526020962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:51 Heat of formation + Delta-G solvation = -58.958168 kcal Electronic energy + Delta-G solvation = -27293.177786 eV Core-core repulsion = 23633.701448 eV Total energy + Delta-G solvation = -3659.476338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.07856 -38.88142 -38.24319 -35.55215 -34.09221 -32.28520 -31.55709 -31.21266 -30.20942 -28.92334 -26.78825 -26.19048 -24.21301 -23.66087 -22.54606 -21.85954 -20.38152 -19.60385 -18.46727 -16.96518 -16.74430 -16.56517 -16.16419 -15.88824 -15.24918 -15.04071 -14.81111 -14.48087 -14.19736 -13.91263 -13.69242 -13.48795 -13.10890 -12.86297 -12.73262 -12.54765 -12.40326 -12.31455 -12.18624 -11.86245 -11.82205 -11.39095 -11.33742 -11.10432 -10.88277 -10.77718 -10.55628 -10.41378 -10.29822 -9.88580 -9.80096 -9.61074 -9.19095 -8.90187 -8.41791 -8.27431 -8.20747 -7.81929 -5.99111 -3.95610 2.09600 2.14556 3.30367 3.38397 3.42940 3.47336 3.52344 3.76432 4.52039 4.57953 4.64770 4.75426 4.88984 5.05775 5.09733 5.18529 5.22544 5.34073 5.44579 5.51528 5.51923 5.53437 5.55424 5.57128 5.67006 5.69399 5.74155 5.81526 5.91572 5.93066 5.98527 6.05894 6.10196 6.24046 6.25119 6.32462 6.57602 6.68344 6.81139 6.90285 7.00880 7.05728 7.14123 7.26819 7.57113 7.71879 7.82106 7.84887 8.52117 8.92139 9.00105 9.66309 11.13814 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.003995 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.936361 B = 7006.663608 C = 7930.198447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.627 5.627 3 C 0.517 3.483 4 O -0.500 6.500 5 C -0.114 4.114 6 C 0.055 3.945 7 H 0.048 0.952 8 C -0.487 4.487 9 H 0.070 0.930 10 C 0.085 3.915 11 N -0.899 5.899 12 Si 0.873 3.127 13 H -0.273 1.273 14 H -0.296 1.296 15 H -0.261 1.261 16 C -0.038 4.038 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.150 4.150 20 C -0.126 4.126 21 C -0.136 4.136 22 C 0.140 3.860 23 C -0.163 4.163 24 C 0.064 3.936 25 O -0.386 6.386 26 C 0.064 3.936 27 C -0.165 4.165 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.262 0.738 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.354 -9.343 6.702 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.364 5.364 3 C 0.306 3.694 4 O -0.372 6.372 5 C -0.155 4.155 6 C 0.036 3.964 7 H 0.067 0.933 8 C -0.524 4.524 9 H 0.088 0.912 10 C -0.117 4.117 11 N -0.536 5.536 12 Si 0.701 3.299 13 H -0.199 1.199 14 H -0.223 1.223 15 H -0.186 1.186 16 C -0.038 4.038 17 C -0.120 4.120 18 C -0.145 4.145 19 C -0.168 4.168 20 C -0.144 4.144 21 C -0.155 4.155 22 C 0.036 3.964 23 C -0.201 4.201 24 C -0.014 4.014 25 O -0.304 6.304 26 C -0.013 4.013 27 C -0.204 4.204 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.575 -9.435 6.605 15.636 hybrid contribution 0.645 0.645 0.653 1.122 sum -9.930 -8.790 7.258 15.118 Atomic orbital electron populations 1.21670 0.80510 1.02879 1.01168 1.48022 1.06356 1.05485 1.76504 1.20907 0.88467 0.84816 0.75259 1.90723 1.13774 1.86468 1.46238 1.21698 0.99129 0.92882 1.01747 1.18138 0.92467 0.86010 0.99796 0.93348 1.20562 0.95251 1.44370 0.92177 0.91181 1.24881 0.97260 0.93850 0.95705 1.69899 1.10936 1.47496 1.25308 0.86932 0.79445 0.78195 0.85307 1.19862 1.22297 1.18598 1.20733 0.92808 0.98563 0.91716 1.20950 0.96293 0.96248 0.98482 1.21046 1.00416 0.95444 0.97634 1.20858 1.00616 0.99738 0.95560 1.20966 0.97792 0.96839 0.98830 1.21151 1.00301 0.95484 0.98521 1.20918 0.98833 0.83247 0.93409 1.22559 1.01846 0.96544 0.99186 1.22554 0.98491 0.92588 0.87720 1.87898 1.81941 1.46708 1.13886 1.22569 0.98652 0.92655 0.87468 1.22574 1.01768 0.96544 0.99464 0.93288 0.90823 0.91650 0.89754 0.91401 0.92862 0.86339 0.87203 0.87433 0.87393 0.87057 0.88053 0.90602 0.90919 0.92905 0.88807 0.88687 0.92805 0.90881 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 9.25 59.85 0.55 1.45 16 2 N -0.63 -9.44 2.77 -173.72 -0.48 -9.92 16 3 C 0.52 10.11 7.43 -10.98 -0.08 10.03 16 4 O -0.50 -12.19 14.33 5.56 0.08 -12.11 16 5 C -0.11 -2.12 3.50 -27.88 -0.10 -2.22 16 6 C 0.06 1.26 1.28 -92.92 -0.12 1.14 16 7 H 0.05 1.18 4.79 -51.92 -0.25 0.93 16 8 C -0.49 -13.31 6.94 -34.44 -0.24 -13.55 16 9 H 0.07 2.07 8.06 -52.48 -0.42 1.65 16 10 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 11 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 12 Si 0.87 22.83 27.04 -169.99 -4.60 18.23 16 13 H -0.27 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 15 H -0.26 -6.33 5.14 56.52 0.29 -6.04 16 16 C -0.04 -0.79 4.77 -104.62 -0.50 -1.28 16 17 C -0.10 -1.97 8.87 -39.58 -0.35 -2.32 16 18 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 19 C -0.15 -2.43 10.05 -39.58 -0.40 -2.83 16 20 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 21 C -0.14 -2.69 9.13 -39.58 -0.36 -3.05 16 22 C 0.14 1.94 2.61 -67.75 -0.18 1.77 16 23 C -0.16 -1.83 5.47 -26.59 -0.15 -1.98 16 24 C 0.06 0.66 6.84 37.21 0.25 0.92 16 25 O -0.39 -4.55 10.76 -35.23 -0.38 -4.93 16 26 C 0.06 0.69 6.84 37.21 0.25 0.95 16 27 C -0.16 -1.97 5.45 -26.59 -0.14 -2.12 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 30 H 0.06 0.62 6.36 -51.93 -0.33 0.29 16 31 H 0.08 1.47 7.06 -51.92 -0.37 1.10 16 32 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 33 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 34 H 0.12 2.26 7.77 -52.49 -0.41 1.85 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.11 2.16 6.95 -52.49 -0.36 1.80 16 39 H 0.10 1.70 6.91 -51.93 -0.36 1.34 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.76 7.58 -51.93 -0.39 0.37 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.80 6.54 -51.93 -0.34 0.46 16 47 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -33.73 368.24 -8.96 -42.69 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.46 Total: 3.57 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.44 Total: -15.81 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.29 Total: -37.20 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.30 Total: -17.04 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.60 Total: 18.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.73 -8.96 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526020962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.266 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds