Wall clock time and date at job start Tue Mar 31 2020 11:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99844 * 2 1 4 4 O 1.21282 * 119.99809 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00079 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47065 * 180.02562 * 5 3 2 7 7 H 1.09007 * 109.46578 * 305.36142 * 6 5 3 8 8 C 1.50699 * 109.47715 * 65.36095 * 6 5 3 9 9 H 1.08004 * 119.99472 * 34.61953 * 8 6 5 10 10 C 1.37873 * 120.00125 * 214.62240 * 8 6 5 11 11 N 1.31519 * 119.99817 * 186.44941 * 10 8 6 12 12 Si 1.86796 * 120.00173 * 6.44489 * 10 8 6 13 13 H 1.48508 * 109.46888 * 85.00926 * 12 10 8 14 14 H 1.48496 * 109.47232 * 205.00827 * 12 10 8 15 15 H 1.48499 * 109.47113 * 325.01515 * 12 10 8 16 16 C 1.50700 * 109.47000 * 185.36854 * 6 5 3 17 17 C 1.38243 * 119.99572 * 296.34968 * 16 6 5 18 18 C 1.38235 * 119.99398 * 179.81022 * 17 16 6 19 19 C 1.38227 * 120.00659 * 0.40201 * 18 17 16 20 20 C 1.38239 * 119.99603 * 359.85312 * 19 18 17 21 21 C 1.38234 * 120.00419 * 359.95637 * 20 19 18 22 22 C 1.46497 * 120.00201 * 180.02562 * 2 1 3 23 23 C 1.53174 * 109.54424 * 300.00058 * 22 2 1 24 24 C 1.53097 * 109.15987 * 176.84334 * 23 22 2 25 25 O 1.42895 * 109.41652 * 302.38956 * 24 23 22 26 26 C 1.42901 * 114.10024 * 61.16042 * 25 24 23 27 27 C 1.53096 * 109.41394 * 298.84206 * 26 25 24 28 28 H 1.09006 * 109.46824 * 269.99586 * 1 2 3 29 29 H 1.09001 * 109.47659 * 29.99420 * 1 2 3 30 30 H 1.08999 * 109.47374 * 150.00133 * 1 2 3 31 31 H 1.09011 * 109.46638 * 299.99215 * 5 3 2 32 32 H 1.08992 * 109.47291 * 59.99520 * 5 3 2 33 33 H 0.96996 * 119.99534 * 179.97438 * 11 10 8 34 34 H 1.07993 * 120.00114 * 0.02562 * 17 16 6 35 35 H 1.08002 * 119.99285 * 180.23207 * 18 17 16 36 36 H 1.08001 * 120.00708 * 179.83227 * 19 18 17 37 37 H 1.08001 * 119.99531 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.00213 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.61801 * 179.77245 * 22 2 1 40 40 H 1.09001 * 109.51908 * 296.74769 * 23 22 2 41 41 H 1.09005 * 109.52371 * 56.94285 * 23 22 2 42 42 H 1.09005 * 109.48018 * 62.37816 * 24 23 22 43 43 H 1.09005 * 109.47760 * 182.40821 * 24 23 22 44 44 H 1.09002 * 109.48569 * 178.85657 * 26 25 24 45 45 H 1.09003 * 109.48962 * 58.82763 * 26 25 24 46 46 H 1.09003 * 109.52028 * 297.70056 * 27 26 25 47 47 H 1.08998 * 109.51831 * 177.51276 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 1 3.0683 3.5248 0.8374 8 6 3.1553 3.6323 -1.2922 9 1 2.6754 3.3240 -2.2093 10 6 4.4774 4.0231 -1.3034 11 7 5.1182 4.1425 -2.4457 12 14 5.3586 4.3830 0.3039 13 1 5.8857 3.1170 0.8737 14 1 6.4837 5.3190 0.0527 15 1 4.4069 4.9990 1.2630 16 6 1.6308 4.9363 0.1333 17 6 0.7508 5.3320 -0.8566 18 6 0.0611 6.5235 -0.7323 19 6 0.2576 7.3233 0.3779 20 6 1.1416 6.9301 1.3652 21 6 1.8284 5.7368 1.2429 22 6 2.1975 -1.2687 -0.0006 23 6 1.8287 -2.0739 1.2492 24 6 2.5376 -3.4300 1.2005 25 8 2.1669 -4.1171 0.0037 26 6 2.5294 -3.4335 -1.1978 27 6 1.8202 -2.0775 -1.2455 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7584 2.5303 -0.8893 32 1 0.7590 2.5299 0.8907 33 1 6.0482 4.4178 -2.4535 34 1 0.5995 4.7086 -1.7254 35 1 -0.6293 6.8308 -1.5039 36 1 -0.2793 8.2556 0.4737 37 1 1.2954 7.5553 2.2324 38 1 2.5193 5.4298 2.0141 39 1 3.2697 -1.0722 -0.0046 40 1 2.1442 -1.5296 2.1393 41 1 0.7499 -2.2277 1.2782 42 1 3.6167 -3.2767 1.2123 43 1 2.2451 -4.0243 2.0662 44 1 2.2311 -4.0303 -2.0598 45 1 3.6084 -3.2802 -1.2176 46 1 0.7413 -2.2314 -1.2668 47 1 2.1296 -1.5360 -2.1394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526020962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:50 Heat of formation + Delta-G solvation = -80.032730 kcal Electronic energy + Delta-G solvation = -27294.091648 eV Core-core repulsion = 23633.701448 eV Total energy + Delta-G solvation = -3660.390200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.32381 -40.19802 -39.54935 -36.83874 -35.83488 -33.87029 -33.14976 -32.11880 -31.60414 -30.35239 -27.99431 -27.82544 -25.51953 -24.58295 -24.09048 -23.27571 -21.65047 -20.92144 -19.88702 -19.03748 -18.15951 -17.65010 -17.24630 -17.08326 -16.64338 -16.42113 -16.09052 -15.78411 -15.61154 -15.42296 -14.88963 -14.75853 -14.56232 -14.30227 -14.18293 -14.02928 -13.84318 -13.52485 -13.30778 -13.28563 -13.19802 -12.84990 -12.72322 -12.36944 -12.28222 -12.08733 -11.96010 -11.90395 -11.80837 -11.47953 -11.34599 -11.09273 -10.81736 -10.62722 -10.39677 -9.62020 -9.52846 -9.30354 -8.24525 -6.19992 0.68446 0.73268 1.28040 1.36198 1.38545 1.86564 2.10236 2.39164 2.90085 3.07123 3.23206 3.60536 3.79098 3.95277 3.97914 4.07068 4.11810 4.19149 4.28720 4.30308 4.31430 4.40358 4.45740 4.48073 4.56085 4.61481 4.69621 4.70544 4.73476 4.78991 4.84900 4.86227 4.93201 4.99228 5.07139 5.10770 5.18818 5.22597 5.37244 5.40267 5.66125 5.72404 5.77000 5.82558 6.02164 6.17158 6.31649 6.35616 6.52670 6.78479 7.43401 7.45721 8.92482 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.003995 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.936361 B = 7006.663608 C = 7930.198447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.619 5.619 3 C 0.508 3.492 4 O -0.564 6.564 5 C -0.107 4.107 6 C 0.056 3.944 7 H 0.030 0.970 8 C -0.462 4.462 9 H 0.034 0.966 10 C 0.024 3.976 11 N -0.952 5.952 12 Si 0.921 3.079 13 H -0.289 1.289 14 H -0.297 1.297 15 H -0.231 1.231 16 C -0.062 4.062 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.140 4.140 20 C -0.124 4.124 21 C -0.154 4.154 22 C 0.132 3.868 23 C -0.151 4.151 24 C 0.062 3.938 25 O -0.391 6.391 26 C 0.065 3.935 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.258 0.742 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.045 0.955 46 H 0.092 0.908 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.860 -8.876 8.678 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.353 5.353 3 C 0.298 3.702 4 O -0.441 6.441 5 C -0.147 4.147 6 C 0.037 3.963 7 H 0.048 0.952 8 C -0.500 4.500 9 H 0.052 0.948 10 C -0.172 4.172 11 N -0.594 5.594 12 Si 0.748 3.252 13 H -0.216 1.216 14 H -0.224 1.224 15 H -0.155 1.155 16 C -0.062 4.062 17 C -0.137 4.137 18 C -0.142 4.142 19 C -0.158 4.158 20 C -0.142 4.142 21 C -0.172 4.172 22 C 0.029 3.971 23 C -0.190 4.190 24 C -0.015 4.015 25 O -0.310 6.310 26 C -0.012 4.012 27 C -0.196 4.196 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.164 -8.992 8.610 18.857 hybrid contribution 1.547 0.469 0.028 1.617 sum -12.616 -8.523 8.637 17.504 Atomic orbital electron populations 1.21997 0.77512 1.04306 1.03130 1.48034 1.08183 1.04614 1.74444 1.21160 0.87867 0.86391 0.74779 1.90700 1.16306 1.87483 1.49620 1.21595 0.98362 0.90923 1.03800 1.18017 0.93033 0.89108 0.96163 0.95192 1.20771 0.95055 1.41184 0.92951 0.94801 1.25587 0.98497 0.95061 0.98098 1.70034 1.11119 1.51011 1.27254 0.86146 0.78842 0.77319 0.82844 1.21579 1.22436 1.15451 1.20466 0.94512 0.97723 0.93532 1.20995 0.97064 0.97658 0.97951 1.21396 0.99924 0.94209 0.98688 1.21337 0.99564 1.00583 0.94281 1.21331 0.96845 0.95903 1.00094 1.21251 1.01133 0.96607 0.98240 1.21032 0.96746 0.83318 0.96039 1.22472 1.02963 0.96342 0.97219 1.22679 0.98160 0.92422 0.88214 1.87895 1.81928 1.46955 1.14233 1.22618 0.98127 0.92289 0.88187 1.22507 1.02964 0.96572 0.97517 0.90933 0.90347 0.89408 0.88703 0.87984 0.93327 0.87274 0.84244 0.83542 0.84260 0.87468 0.92029 0.91044 0.89070 0.93567 0.86216 0.86517 0.93657 0.88938 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 9.25 127.77 1.18 2.59 16 2 N -0.62 -18.38 2.77 -821.92 -2.28 -20.65 16 3 C 0.51 20.43 7.43 87.66 0.65 21.08 16 4 O -0.56 -29.16 14.33 -3.03 -0.04 -29.20 16 5 C -0.11 -3.96 3.50 29.85 0.10 -3.85 16 6 C 0.06 2.60 1.28 -12.29 -0.02 2.58 16 7 H 0.03 1.49 4.79 -2.38 -0.01 1.48 16 8 C -0.46 -26.46 6.94 25.60 0.18 -26.29 16 9 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 10 C 0.02 1.46 5.47 84.65 0.46 1.92 16 11 N -0.95 -62.87 13.96 21.45 0.30 -62.57 16 12 Si 0.92 49.06 27.04 68.60 1.85 50.91 16 13 H -0.29 -15.99 7.11 99.48 0.71 -15.28 16 14 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 15 H -0.23 -11.02 5.14 99.48 0.51 -10.51 16 16 C -0.06 -2.54 4.77 -19.86 -0.09 -2.63 16 17 C -0.12 -4.45 8.87 22.27 0.20 -4.25 16 18 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 19 C -0.14 -3.88 10.05 22.27 0.22 -3.66 16 20 C -0.12 -3.77 10.05 22.27 0.22 -3.54 16 21 C -0.15 -5.77 9.13 22.27 0.20 -5.56 16 22 C 0.13 3.71 2.61 45.11 0.12 3.82 16 23 C -0.15 -3.19 5.47 30.68 0.17 -3.03 16 24 C 0.06 1.20 6.84 72.01 0.49 1.69 16 25 O -0.39 -8.52 10.76 -148.98 -1.60 -10.13 16 26 C 0.06 1.36 6.84 72.01 0.49 1.85 16 27 C -0.16 -3.68 5.45 30.69 0.17 -3.51 16 28 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.08 1.48 6.44 -2.39 -0.02 1.47 16 30 H 0.09 1.35 6.36 -2.39 -0.02 1.33 16 31 H 0.09 3.28 7.06 -2.38 -0.02 3.26 16 32 H 0.10 3.05 8.11 -2.39 -0.02 3.03 16 33 H 0.26 16.28 8.31 -92.71 -0.77 15.50 16 34 H 0.11 4.19 7.77 -2.91 -0.02 4.16 16 35 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 38 H 0.11 4.01 6.95 -2.91 -0.02 3.98 16 39 H 0.06 2.23 6.91 -2.39 -0.02 2.21 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 1.61 7.58 -2.38 -0.02 1.59 16 42 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.09 1.80 6.54 -2.39 -0.02 1.78 16 47 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -79.31 368.24 3.96 -75.35 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.75 Total: 20.65 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 4.98 Total: -24.36 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -1.98 Total: -83.23 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.65 Total: -39.33 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.85 Total: 50.91 kcal Total: -79.31 3.96 -75.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526020962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.684 kcal (2) G-P(sol) polarization free energy of solvation -79.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds