Wall clock time and date at job start Tue Mar 31 2020 13:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 116.99821 * 2 1 4 4 O 1.20827 * 120.00261 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00013 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47050 * 299.99876 * 5 3 2 7 7 C 1.50701 * 109.47219 * 59.99916 * 5 3 2 8 8 C 1.38235 * 119.99808 * 260.00245 * 7 5 3 9 9 C 1.38243 * 119.99602 * 179.97438 * 8 7 5 10 10 C 1.38231 * 120.00070 * 0.07188 * 9 8 7 11 11 C 1.38234 * 119.99892 * 359.90902 * 10 9 8 12 12 C 1.38230 * 119.99865 * 79.97990 * 7 5 3 13 13 N 1.46903 * 109.47446 * 180.02562 * 5 3 2 14 14 C 1.46847 * 110.99889 * 184.20798 * 13 5 3 15 15 C 1.53038 * 109.51789 * 174.15765 * 14 13 5 16 16 C 1.53126 * 109.27781 * 59.18431 * 15 14 13 17 17 C 1.52995 * 109.51921 * 182.43755 * 16 15 14 18 18 C 1.50695 * 109.47436 * 294.67836 * 17 16 15 19 19 H 1.08000 * 120.00065 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00431 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00018 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00111 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47608 * 89.99810 * 22 20 18 24 24 H 1.48506 * 109.46776 * 209.99570 * 22 20 18 25 25 H 1.48502 * 109.47097 * 329.99210 * 22 20 18 26 26 C 1.53120 * 109.15635 * 302.34031 * 16 15 14 27 27 C 1.46849 * 110.99678 * 59.99945 * 13 5 3 28 28 H 1.09004 * 109.47493 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47324 * 299.99915 * 1 2 3 30 30 H 1.09001 * 109.47387 * 59.99883 * 1 2 3 31 31 H 1.08000 * 120.00616 * 359.70324 * 8 7 5 32 32 H 1.08001 * 119.99556 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.99633 * 179.97438 * 10 9 8 34 34 H 1.07999 * 119.99751 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.00371 * 0.02562 * 12 7 5 36 36 H 1.09000 * 109.46386 * 294.17610 * 14 13 5 37 37 H 1.08996 * 109.45901 * 54.14730 * 14 13 5 38 38 H 1.08998 * 109.50505 * 299.23891 * 15 14 13 39 39 H 1.09001 * 109.49909 * 179.11956 * 15 14 13 40 40 H 1.08997 * 109.52065 * 62.24389 * 16 15 14 41 41 H 1.09002 * 109.47480 * 54.68368 * 17 16 15 42 42 H 1.09008 * 109.46848 * 174.67922 * 17 16 15 43 43 H 0.97001 * 120.00746 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.50251 * 297.71374 * 26 16 15 45 45 H 1.09000 * 109.49711 * 177.59462 * 26 16 15 46 46 H 1.08998 * 109.46116 * 305.85401 * 27 13 5 47 47 H 1.08996 * 109.46228 * 65.82745 * 27 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8892 7 6 4.1046 0.5920 -1.2314 8 6 4.5991 -0.6961 -1.1466 9 6 5.0925 -1.3227 -2.2758 10 6 5.0927 -0.6606 -3.4893 11 6 4.5978 0.6273 -3.5740 12 6 4.1035 1.2535 -2.4451 13 7 3.9828 2.6836 0.0002 14 6 5.4431 2.8006 -0.1010 15 6 5.8293 4.2746 -0.2439 16 6 5.3194 5.0511 0.9734 17 6 5.6493 6.5358 0.8075 18 6 7.1445 6.7230 0.8222 19 1 7.7946 5.8683 0.9379 20 6 7.6828 7.9852 0.6880 21 7 6.8913 9.0259 0.5466 22 14 9.5362 8.2170 0.7056 23 1 10.0610 8.1163 -0.6799 24 1 9.8625 9.5545 1.2625 25 1 10.1587 7.1646 1.5484 26 6 3.8026 4.8731 1.0837 27 6 3.4751 3.3818 1.1881 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.6041 -1.2113 -0.1975 32 1 5.4793 -2.3289 -2.2095 33 1 5.4786 -1.1500 -4.3713 34 1 4.5976 1.1444 -4.5222 35 1 3.7172 2.2599 -2.5113 36 1 5.9035 2.3900 0.7977 37 1 5.7922 2.2476 -0.9729 38 1 5.3805 4.6822 -1.1497 39 1 6.9141 4.3624 -0.3032 40 1 5.7975 4.6693 1.8754 41 1 5.2477 6.8936 -0.1406 42 1 5.2043 7.1006 1.6268 43 1 7.2698 9.9140 0.4519 44 1 3.3220 5.2902 0.1988 45 1 3.4395 5.3885 1.9728 46 1 2.3950 3.2509 1.2524 47 1 3.9448 2.9685 2.0807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567381655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:42 Heat of formation + Delta-G solvation = -58.216082 kcal Electronic energy + Delta-G solvation = -27230.755437 eV Core-core repulsion = 23571.311278 eV Total energy + Delta-G solvation = -3659.444159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.02772 -39.38618 -38.31858 -36.52655 -34.79185 -32.71829 -31.26803 -30.99741 -30.25926 -28.73225 -27.75939 -25.92114 -23.65468 -22.89850 -22.66625 -21.88942 -20.91847 -20.29643 -18.89999 -17.75600 -17.08090 -16.82060 -16.37659 -16.15452 -15.78930 -15.29846 -14.59819 -14.38475 -14.34567 -14.08303 -13.75563 -13.45743 -13.43777 -13.16567 -13.00194 -12.70145 -12.47261 -12.26153 -12.17394 -11.87113 -11.66796 -11.21649 -11.16324 -11.05420 -10.92433 -10.86657 -10.64790 -10.58382 -10.48516 -10.21502 -9.81201 -9.49963 -9.03752 -8.97785 -8.86503 -8.75091 -8.29307 -8.20642 -5.93560 -3.94968 1.13539 1.32265 2.10448 2.46004 3.34722 3.41138 3.43947 3.62127 4.03184 4.43913 4.50443 4.68709 4.75826 4.89900 4.90278 4.97682 5.03014 5.06834 5.30607 5.35831 5.39057 5.41537 5.48411 5.52852 5.61468 5.75781 5.80293 5.92920 5.96883 5.99596 6.16782 6.19203 6.31816 6.38185 6.42750 6.43589 6.51820 6.61375 6.71485 6.87272 7.01591 7.09924 7.22910 7.25519 7.33594 7.69115 7.75474 7.92410 8.07742 8.50565 9.11758 9.68263 11.17764 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.003443 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.453038 B = 8130.549766 C = 9417.912867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.479 6.479 5 C 0.136 3.864 6 H 0.081 0.919 7 C -0.084 4.084 8 C -0.100 4.100 9 C -0.125 4.125 10 C -0.115 4.115 11 C -0.124 4.124 12 C -0.083 4.083 13 N -0.514 5.514 14 C 0.056 3.944 15 C -0.097 4.097 16 C -0.083 4.083 17 C 0.028 3.972 18 C -0.513 4.513 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.106 4.106 27 C 0.044 3.956 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.017 0.983 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.090 0.910 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 -23.210 -4.151 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.364 6.364 5 C 0.027 3.973 6 H 0.099 0.901 7 C -0.084 4.084 8 C -0.119 4.119 9 C -0.143 4.143 10 C -0.133 4.133 11 C -0.142 4.142 12 C -0.101 4.101 13 N -0.240 5.240 14 C -0.070 4.070 15 C -0.134 4.134 16 C -0.101 4.101 17 C -0.009 4.009 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.144 4.144 27 C -0.083 4.083 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.830 -22.480 -4.566 24.957 hybrid contribution 1.200 -0.079 0.748 1.416 sum -8.631 -22.559 -3.818 24.454 Atomic orbital electron populations 1.23247 0.76392 1.03519 1.02605 1.86500 1.23271 1.33390 1.84282 1.23440 0.91381 0.81450 0.72776 1.90638 1.66499 1.35815 1.43448 1.19976 0.87498 0.92370 0.97495 0.90141 1.19289 1.01072 0.94428 0.93651 1.20984 0.98010 0.93956 0.98917 1.21054 1.00580 0.99978 0.92718 1.21198 0.99250 0.95097 0.97717 1.21201 0.99213 0.95182 0.98634 1.21195 0.97249 1.00281 0.91403 1.61771 1.13014 1.07367 1.41890 1.22311 0.84789 0.99720 1.00202 1.21535 1.01298 0.91137 0.99461 1.21268 0.92676 0.99571 0.96625 1.19108 0.96107 0.88557 0.97088 1.21258 0.92213 0.92537 1.49173 0.92733 1.25017 0.97620 0.96254 0.95605 1.69966 1.34465 0.98715 1.50414 0.86665 0.86236 0.77365 0.78146 1.20738 1.21350 1.19975 1.21624 0.97971 0.92922 1.01864 1.22488 1.01106 0.95945 0.88742 0.88207 0.91918 0.91868 0.85977 0.86016 0.86172 0.85853 0.84677 0.95176 0.90843 0.91741 0.90684 0.93071 0.96489 0.96779 0.93128 0.91438 0.92108 0.89163 0.95701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.08 10.48 -39.25 -0.41 -4.49 16 3 C 0.47 6.28 6.92 36.01 0.25 6.53 16 4 O -0.48 -7.61 13.60 -18.75 -0.25 -7.87 16 5 C 0.14 1.75 2.19 -70.01 -0.15 1.59 16 6 H 0.08 0.93 8.00 -51.93 -0.42 0.51 16 7 C -0.08 -1.00 3.60 -104.63 -0.38 -1.37 16 8 C -0.10 -1.02 9.67 -39.58 -0.38 -1.40 16 9 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 10 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 11 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 12 C -0.08 -1.02 8.11 -39.59 -0.32 -1.34 16 13 N -0.51 -7.76 3.67 -229.47 -0.84 -8.60 16 14 C 0.06 0.87 5.07 -3.83 -0.02 0.85 16 15 C -0.10 -1.82 5.15 -26.65 -0.14 -1.96 16 16 C -0.08 -1.72 2.20 -90.49 -0.20 -1.91 16 17 C 0.03 0.74 4.45 -27.89 -0.12 0.61 16 18 C -0.51 -14.41 8.45 -34.44 -0.29 -14.70 16 19 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 22 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 27 C 0.04 0.70 5.07 -3.83 -0.02 0.68 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.12 1.02 8.04 -52.49 -0.42 0.60 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.14 1.84 7.72 -52.49 -0.41 1.44 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 1.07 5.96 -51.93 -0.31 0.76 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.50 7.05 -51.93 -0.37 1.13 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 1.47 5.25 -51.93 -0.27 1.19 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -31.92 375.44 -9.89 -41.82 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.62 Total: -0.46 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.14 Total: -16.35 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.11 Total: -35.08 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.67 Total: -12.36 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.92 -9.89 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567381655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.398 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds