Wall clock time and date at job start Tue Mar 31 2020 13:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 116.99821 * 2 1 4 4 O 1.20827 * 120.00261 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00013 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47050 * 299.99876 * 5 3 2 7 7 C 1.50701 * 109.47219 * 59.99916 * 5 3 2 8 8 C 1.38235 * 119.99808 * 260.00245 * 7 5 3 9 9 C 1.38243 * 119.99602 * 179.97438 * 8 7 5 10 10 C 1.38231 * 120.00070 * 0.07188 * 9 8 7 11 11 C 1.38234 * 119.99892 * 359.90902 * 10 9 8 12 12 C 1.38230 * 119.99865 * 79.97990 * 7 5 3 13 13 N 1.46903 * 109.47446 * 180.02562 * 5 3 2 14 14 C 1.46847 * 110.99889 * 184.20798 * 13 5 3 15 15 C 1.53038 * 109.51789 * 174.15765 * 14 13 5 16 16 C 1.53126 * 109.27781 * 59.18431 * 15 14 13 17 17 C 1.52995 * 109.51921 * 182.43755 * 16 15 14 18 18 C 1.50695 * 109.47436 * 294.67836 * 17 16 15 19 19 H 1.08000 * 120.00065 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00431 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00018 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00111 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47608 * 89.99810 * 22 20 18 24 24 H 1.48506 * 109.46776 * 209.99570 * 22 20 18 25 25 H 1.48502 * 109.47097 * 329.99210 * 22 20 18 26 26 C 1.53120 * 109.15635 * 302.34031 * 16 15 14 27 27 C 1.46849 * 110.99678 * 59.99945 * 13 5 3 28 28 H 1.09004 * 109.47493 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47324 * 299.99915 * 1 2 3 30 30 H 1.09001 * 109.47387 * 59.99883 * 1 2 3 31 31 H 1.08000 * 120.00616 * 359.70324 * 8 7 5 32 32 H 1.08001 * 119.99556 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.99633 * 179.97438 * 10 9 8 34 34 H 1.07999 * 119.99751 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.00371 * 0.02562 * 12 7 5 36 36 H 1.09000 * 109.46386 * 294.17610 * 14 13 5 37 37 H 1.08996 * 109.45901 * 54.14730 * 14 13 5 38 38 H 1.08998 * 109.50505 * 299.23891 * 15 14 13 39 39 H 1.09001 * 109.49909 * 179.11956 * 15 14 13 40 40 H 1.08997 * 109.52065 * 62.24389 * 16 15 14 41 41 H 1.09002 * 109.47480 * 54.68368 * 17 16 15 42 42 H 1.09008 * 109.46848 * 174.67922 * 17 16 15 43 43 H 0.97001 * 120.00746 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.50251 * 297.71374 * 26 16 15 45 45 H 1.09000 * 109.49711 * 177.59462 * 26 16 15 46 46 H 1.08998 * 109.46116 * 305.85401 * 27 13 5 47 47 H 1.08996 * 109.46228 * 65.82745 * 27 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8892 7 6 4.1046 0.5920 -1.2314 8 6 4.5991 -0.6961 -1.1466 9 6 5.0925 -1.3227 -2.2758 10 6 5.0927 -0.6606 -3.4893 11 6 4.5978 0.6273 -3.5740 12 6 4.1035 1.2535 -2.4451 13 7 3.9828 2.6836 0.0002 14 6 5.4431 2.8006 -0.1010 15 6 5.8293 4.2746 -0.2439 16 6 5.3194 5.0511 0.9734 17 6 5.6493 6.5358 0.8075 18 6 7.1445 6.7230 0.8222 19 1 7.7946 5.8683 0.9379 20 6 7.6828 7.9852 0.6880 21 7 6.8913 9.0259 0.5466 22 14 9.5362 8.2170 0.7056 23 1 10.0610 8.1163 -0.6799 24 1 9.8625 9.5545 1.2625 25 1 10.1587 7.1646 1.5484 26 6 3.8026 4.8731 1.0837 27 6 3.4751 3.3818 1.1881 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.6041 -1.2113 -0.1975 32 1 5.4793 -2.3289 -2.2095 33 1 5.4786 -1.1500 -4.3713 34 1 4.5976 1.1444 -4.5222 35 1 3.7172 2.2599 -2.5113 36 1 5.9035 2.3900 0.7977 37 1 5.7922 2.2476 -0.9729 38 1 5.3805 4.6822 -1.1497 39 1 6.9141 4.3624 -0.3032 40 1 5.7975 4.6693 1.8754 41 1 5.2477 6.8936 -0.1406 42 1 5.2043 7.1006 1.6268 43 1 7.2698 9.9140 0.4519 44 1 3.3220 5.2902 0.1988 45 1 3.4395 5.3885 1.9728 46 1 2.3950 3.2509 1.2524 47 1 3.9448 2.9685 2.0807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567381655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:41 Heat of formation + Delta-G solvation = -75.171247 kcal Electronic energy + Delta-G solvation = -27231.490668 eV Core-core repulsion = 23571.311278 eV Total energy + Delta-G solvation = -3660.179390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04218 -40.33217 -39.48218 -37.59118 -36.25936 -34.56847 -32.58659 -31.89958 -31.54182 -29.91230 -29.01354 -27.20221 -25.37931 -24.18157 -23.47308 -22.89803 -22.48012 -21.35514 -20.47234 -18.73238 -18.43862 -17.92664 -17.80232 -17.21019 -16.92704 -16.48503 -16.13424 -15.56596 -15.40496 -15.19336 -15.06981 -14.72136 -14.49650 -14.21854 -14.17600 -14.06650 -13.87359 -13.49925 -13.25785 -13.17582 -12.96531 -12.90240 -12.64063 -12.47455 -12.29314 -12.06766 -11.99389 -11.90167 -11.85584 -11.74696 -11.43236 -11.23948 -10.89914 -10.61339 -10.51569 -9.76661 -9.64309 -9.37996 -8.15877 -6.25823 0.34324 0.55235 1.10289 1.40342 1.41773 1.52503 1.55757 2.42801 2.71697 3.03646 3.17212 3.53337 3.78371 3.87502 3.97671 4.07175 4.09163 4.22314 4.26496 4.29831 4.32558 4.34575 4.36840 4.51252 4.64268 4.66313 4.69116 4.71433 4.73394 4.81924 4.93443 5.03020 5.06960 5.12658 5.21396 5.30595 5.36650 5.41862 5.45033 5.57230 5.58815 5.62823 5.67316 5.80002 5.88752 6.00237 6.05323 6.13602 6.30424 6.70677 6.90402 7.42578 8.96266 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.003443 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.453038 B = 8130.549766 C = 9417.912867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.471 3.529 4 O -0.513 6.513 5 C 0.138 3.862 6 H 0.102 0.898 7 C -0.096 4.096 8 C -0.101 4.101 9 C -0.123 4.123 10 C -0.114 4.114 11 C -0.134 4.134 12 C -0.104 4.104 13 N -0.527 5.527 14 C 0.072 3.928 15 C -0.090 4.090 16 C -0.073 4.073 17 C 0.034 3.966 18 C -0.527 4.527 19 H 0.063 0.937 20 C -0.004 4.004 21 N -0.937 5.937 22 Si 0.962 3.038 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.261 1.261 26 C -0.100 4.100 27 C 0.055 3.945 28 H 0.135 0.865 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.053 0.947 41 H -0.015 1.015 42 H -0.016 1.016 43 H 0.261 0.739 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.090 0.910 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 -26.782 -4.111 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.314 3.686 4 O -0.401 6.401 5 C 0.029 3.971 6 H 0.120 0.880 7 C -0.097 4.097 8 C -0.119 4.119 9 C -0.140 4.140 10 C -0.132 4.132 11 C -0.152 4.152 12 C -0.123 4.123 13 N -0.254 5.254 14 C -0.055 4.055 15 C -0.128 4.128 16 C -0.092 4.092 17 C -0.003 4.003 18 C -0.565 4.565 19 H 0.081 0.919 20 C -0.201 4.201 21 N -0.578 5.578 22 Si 0.787 3.213 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.185 1.185 26 C -0.138 4.138 27 C -0.072 4.072 28 H 0.153 0.847 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.128 0.872 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.553 -26.091 -4.526 27.828 hybrid contribution 0.708 0.994 0.679 1.397 sum -7.845 -25.097 -3.847 26.574 Atomic orbital electron populations 1.23550 0.74691 1.05762 1.02381 1.86484 1.24897 1.32083 1.83662 1.23588 0.91670 0.81532 0.71819 1.90627 1.67242 1.36972 1.45235 1.20018 0.87334 0.90751 0.99017 0.88050 1.19266 1.02246 0.95359 0.92802 1.21242 0.97255 0.93119 1.00325 1.21437 0.99426 1.01077 0.92088 1.21533 0.98239 0.94408 0.98973 1.21377 0.99272 0.96061 0.98470 1.21100 0.98819 0.99676 0.92663 1.61601 1.12654 1.09509 1.41595 1.22081 0.85247 0.96843 1.01306 1.21391 1.00276 0.93567 0.97589 1.21101 0.94417 0.96093 0.97599 1.18993 0.95285 0.91847 0.94132 1.21646 0.93183 0.92996 1.48718 0.91862 1.25986 1.03063 0.95935 0.95100 1.70117 1.36906 0.99288 1.51489 0.85493 0.79694 0.77540 0.78607 1.19855 1.21072 1.18527 1.21512 0.96019 0.95315 1.00989 1.22305 1.01295 0.93873 0.89740 0.84710 0.91871 0.92466 0.83940 0.83144 0.83693 0.85039 0.87201 0.94006 0.89580 0.93520 0.91815 0.92846 0.99661 0.99743 0.92999 0.93323 0.92131 0.89164 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -7.46 10.48 -51.38 -0.54 -8.00 16 3 C 0.47 12.21 6.92 71.24 0.49 12.70 16 4 O -0.51 -16.40 13.60 21.96 0.30 -16.10 16 5 C 0.14 3.33 2.19 43.42 0.10 3.43 16 6 H 0.10 2.04 8.00 -2.39 -0.02 2.02 16 7 C -0.10 -2.12 3.60 -19.87 -0.07 -2.19 16 8 C -0.10 -1.72 9.67 22.27 0.22 -1.51 16 9 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16 10 C -0.11 -1.78 10.05 22.27 0.22 -1.55 16 11 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 12 C -0.10 -2.52 8.11 22.27 0.18 -2.34 16 13 N -0.53 -15.69 3.67 -879.92 -3.23 -18.92 16 14 C 0.07 2.16 5.07 86.33 0.44 2.60 16 15 C -0.09 -3.48 5.15 30.65 0.16 -3.32 16 16 C -0.07 -3.14 2.20 -10.71 -0.02 -3.16 16 17 C 0.03 1.89 4.45 29.84 0.13 2.02 16 18 C -0.53 -30.28 8.45 25.60 0.22 -30.06 16 19 H 0.06 3.45 7.08 -2.91 -0.02 3.43 16 20 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 21 N -0.94 -58.66 13.29 21.45 0.28 -58.37 16 22 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 25 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 26 C -0.10 -3.83 5.38 30.65 0.16 -3.67 16 27 C 0.05 1.74 5.07 86.33 0.44 2.17 16 28 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.14 1.80 8.04 -2.91 -0.02 1.77 16 32 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.11 3.15 7.72 -2.91 -0.02 3.13 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.09 2.41 5.96 -2.39 -0.01 2.39 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.06 2.57 7.05 -2.39 -0.02 2.55 16 40 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 41 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 42 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.09 2.93 5.25 -2.39 -0.01 2.92 16 47 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -71.34 375.44 4.55 -66.80 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.94 Total: 14.58 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.77 Total: -26.99 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -2.94 Total: -77.29 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.24 Total: -24.10 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.34 4.55 -66.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567381655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.374 kcal (2) G-P(sol) polarization free energy of solvation -71.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds