Wall clock time and date at job start Tue Mar 31 2020 12:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00460 * 2 1 4 4 H 1.09005 * 109.47188 * 30.00236 * 3 2 1 5 5 C 1.52999 * 109.47484 * 270.00513 * 3 2 1 6 6 C 1.50707 * 109.46915 * 62.81937 * 5 3 2 7 7 C 1.38238 * 119.99840 * 269.72746 * 6 5 3 8 8 C 1.38236 * 119.99439 * 179.78801 * 7 6 5 9 9 C 1.38238 * 120.00463 * 0.44510 * 8 7 6 10 10 C 1.38242 * 119.99566 * 359.81028 * 9 8 7 11 11 C 1.38230 * 119.99915 * 359.97438 * 10 9 8 12 12 C 1.50692 * 109.47565 * 150.00178 * 3 2 1 13 13 O 1.21285 * 119.99800 * 8.56730 * 12 3 2 14 14 N 1.34775 * 120.00612 * 188.56416 * 12 3 2 15 15 C 1.46928 * 120.63539 * 184.95693 * 14 12 3 16 16 C 1.52761 * 109.00682 * 233.58325 * 15 14 12 17 17 C 1.53037 * 109.38124 * 305.58232 * 16 15 14 18 18 C 1.53038 * 109.53858 * 61.24310 * 17 16 15 19 19 H 1.09000 * 109.50102 * 58.58348 * 18 17 16 20 20 C 1.50699 * 109.49934 * 178.68126 * 18 17 16 21 21 H 1.07999 * 119.99959 * 119.84370 * 20 18 17 22 22 C 1.37873 * 120.00318 * 299.83789 * 20 18 17 23 23 N 1.31516 * 119.99900 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00490 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46920 * 60.00204 * 24 22 20 26 26 H 1.48499 * 109.47576 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47164 * 300.00526 * 24 22 20 28 28 C 1.46930 * 120.62684 * 5.22954 * 14 12 3 29 29 H 1.08994 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47368 * 59.99225 * 1 2 3 31 31 H 1.09009 * 109.46620 * 299.99351 * 1 2 3 32 32 H 1.08994 * 109.47894 * 182.81802 * 5 3 2 33 33 H 1.09001 * 109.47039 * 302.82170 * 5 3 2 34 34 H 1.07993 * 119.99923 * 359.97438 * 7 6 5 35 35 H 1.07995 * 119.99752 * 180.27784 * 8 7 6 36 36 H 1.07991 * 120.00178 * 179.83416 * 9 8 7 37 37 H 1.07999 * 119.99885 * 180.02562 * 10 9 8 38 38 H 1.08003 * 119.99572 * 179.97438 * 11 10 9 39 39 H 1.09005 * 109.58296 * 353.41734 * 15 14 12 40 40 H 1.09002 * 109.58670 * 113.83594 * 15 14 12 41 41 H 1.09003 * 109.56161 * 185.55510 * 16 15 14 42 42 H 1.08998 * 109.39058 * 65.51157 * 16 15 14 43 43 H 1.08998 * 109.46441 * 301.22080 * 17 16 15 44 44 H 1.09000 * 109.46170 * 181.26045 * 17 16 15 45 45 H 0.97001 * 120.00186 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.58478 * 246.15915 * 28 14 12 47 47 H 1.08993 * 109.58554 * 6.44323 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 0.8821 1.8796 -2.1323 7 6 0.3633 0.7912 -2.8086 8 6 -0.8637 0.8892 -3.4376 9 6 -1.5677 2.0783 -3.3982 10 6 -1.0464 3.1682 -2.7264 11 6 0.1786 3.0688 -2.0936 12 6 3.3387 1.2638 0.7103 13 8 3.8203 0.1987 1.0338 14 7 3.9916 2.4101 0.9861 15 6 5.3353 2.3821 1.5798 16 6 5.3392 3.2414 2.8428 17 6 4.8306 4.6445 2.5040 18 6 3.3946 4.5561 1.9823 19 1 2.7610 4.0910 2.7375 20 6 2.8833 5.9410 1.6795 21 1 2.5723 6.1946 0.6768 22 6 2.8125 6.8844 2.6825 23 7 3.1906 6.5755 3.9036 24 14 2.1794 8.6013 2.3071 25 1 0.7875 8.5150 1.7968 26 1 2.2019 9.4192 3.5463 27 1 3.0448 9.2343 1.2797 28 6 3.3708 3.7116 0.7044 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 2.7068 2.7454 -1.4430 33 1 2.8422 1.0510 -1.9708 34 1 0.9153 -0.1364 -2.8429 35 1 -1.2711 0.0376 -3.9621 36 1 -2.5251 2.1556 -3.8919 37 1 -1.5965 4.0970 -2.6952 38 1 0.5860 3.9205 -1.5691 39 1 5.6000 1.3563 1.8366 40 1 6.0579 2.7807 0.8676 41 1 6.3537 3.3074 3.2362 42 1 4.6878 2.7889 3.5904 43 1 5.4683 5.0871 1.7388 44 1 4.8540 5.2653 3.3996 45 1 3.1411 7.2392 4.6093 46 1 3.9299 4.2208 -0.0806 47 1 2.3405 3.5627 0.3814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:39 Heat of formation + Delta-G solvation = -58.563664 kcal Electronic energy + Delta-G solvation = -27700.586913 eV Core-core repulsion = 24041.127682 eV Total energy + Delta-G solvation = -3659.459231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.35604 -39.22958 -37.54764 -36.50856 -33.61662 -33.18012 -31.67861 -30.99171 -30.24548 -29.31201 -26.25831 -25.36659 -25.01750 -23.61022 -22.63667 -21.60637 -21.12616 -19.96758 -18.50613 -17.22545 -16.86687 -16.56863 -16.01408 -15.77194 -15.23028 -15.07455 -14.96069 -14.66963 -14.24706 -14.06588 -13.48740 -13.38106 -13.27116 -12.97061 -12.82478 -12.77419 -12.59010 -12.39668 -12.18579 -11.87668 -11.70017 -11.17076 -11.14442 -11.04374 -10.95364 -10.85456 -10.81351 -10.35992 -10.02429 -9.93051 -9.80397 -9.63263 -9.18071 -8.94778 -8.93303 -8.49730 -8.46853 -7.96519 -6.10547 -4.19608 1.24580 1.33403 2.95995 3.15098 3.23576 3.29790 3.31313 3.71401 4.11254 4.33573 4.58145 4.79577 4.92307 5.01600 5.03913 5.12046 5.15295 5.19197 5.34637 5.44829 5.48127 5.53329 5.62235 5.66267 5.73021 5.77396 5.78474 5.87338 6.00109 6.00736 6.04718 6.16019 6.27617 6.39755 6.44612 6.46300 6.51896 6.57377 6.73959 6.89312 6.93149 7.10131 7.16467 7.30367 7.59293 7.81713 7.87399 8.00056 8.26314 8.58928 8.83651 9.46208 10.94592 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.004713 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.666343 B = 5939.949366 C = 7862.259536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.357 6.357 3 C 0.081 3.919 4 H 0.089 0.911 5 C -0.102 4.102 6 C -0.081 4.081 7 C -0.106 4.106 8 C -0.127 4.127 9 C -0.125 4.125 10 C -0.118 4.118 11 C -0.114 4.114 12 C 0.515 3.485 13 O -0.539 6.539 14 N -0.601 5.601 15 C 0.116 3.884 16 C -0.135 4.135 17 C -0.112 4.112 18 C 0.039 3.961 19 H 0.030 0.970 20 C -0.519 4.519 21 H 0.057 0.943 22 C 0.066 3.934 23 N -0.885 5.885 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.107 3.893 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.262 0.738 46 H 0.062 0.938 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.649 -7.850 -11.664 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.274 6.274 3 C 0.020 3.980 4 H 0.107 0.893 5 C -0.140 4.140 6 C -0.081 4.081 7 C -0.124 4.124 8 C -0.145 4.145 9 C -0.143 4.143 10 C -0.136 4.136 11 C -0.132 4.132 12 C 0.302 3.698 13 O -0.417 6.417 14 N -0.334 5.334 15 C -0.006 4.006 16 C -0.173 4.173 17 C -0.150 4.150 18 C 0.020 3.980 19 H 0.048 0.952 20 C -0.558 4.558 21 H 0.075 0.925 22 C -0.136 4.136 23 N -0.523 5.523 24 Si 0.719 3.281 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.014 4.014 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.113 0.887 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.261 -8.513 -11.304 15.097 hybrid contribution -0.631 1.357 -0.078 1.498 sum -5.892 -7.156 -11.381 14.679 Atomic orbital electron populations 1.23224 0.81084 1.02841 1.01169 1.87978 1.19406 1.25153 1.94880 1.21880 0.94262 0.86748 0.95114 0.89285 1.21154 0.94924 1.03663 0.94241 1.19792 0.96240 0.93917 0.98180 1.21081 0.95958 0.98380 0.96952 1.21122 0.95255 0.97867 1.00214 1.21148 0.99890 0.93402 0.99828 1.21169 0.95922 0.98775 0.97769 1.21238 0.95040 0.97592 0.99293 1.20193 0.86059 0.84004 0.79575 1.90646 1.68032 1.29648 1.53333 1.48231 1.17703 1.06339 1.61146 1.21496 0.82618 1.01102 0.95383 1.21925 1.00536 0.98564 0.96279 1.21623 0.97169 0.93302 1.02904 1.18981 0.93942 0.93979 0.91057 0.95185 1.20983 1.43470 0.95830 0.95519 0.92498 1.24928 0.95062 0.98636 0.94984 1.69865 1.47010 1.34624 1.00835 0.86667 0.79452 0.84257 0.77678 1.20255 1.21279 1.20207 1.22257 0.96405 0.81802 1.00938 0.89765 0.92180 0.94193 0.88704 0.89662 0.85801 0.86217 0.86335 0.85959 0.85310 0.90198 0.92136 0.92420 0.92448 0.94508 0.88656 0.92784 0.92018 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.19 101.05 1.03 1.20 16 2 O -0.36 -5.77 9.71 -55.00 -0.53 -6.31 16 3 C 0.08 1.28 1.91 -27.89 -0.05 1.23 16 4 H 0.09 1.39 6.64 -51.93 -0.34 1.05 16 5 C -0.10 -1.36 4.74 -27.88 -0.13 -1.49 16 6 C -0.08 -0.99 3.74 -104.62 -0.39 -1.38 16 7 C -0.11 -1.17 6.91 -39.58 -0.27 -1.44 16 8 C -0.13 -1.23 9.92 -39.58 -0.39 -1.62 16 9 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 10 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 11 C -0.11 -1.35 9.70 -39.59 -0.38 -1.73 16 12 C 0.52 9.68 7.05 -10.99 -0.08 9.60 16 13 O -0.54 -11.80 15.94 -14.21 -0.23 -12.03 16 14 N -0.60 -10.96 2.98 -173.03 -0.52 -11.47 16 15 C 0.12 2.04 6.41 -3.93 -0.03 2.02 16 16 C -0.13 -2.53 6.06 -26.83 -0.16 -2.69 16 17 C -0.11 -2.44 4.96 -26.69 -0.13 -2.57 16 18 C 0.04 0.89 2.25 -91.65 -0.21 0.69 16 19 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 20 C -0.52 -12.87 8.56 -34.44 -0.29 -13.16 16 21 H 0.06 1.35 7.74 -52.49 -0.41 0.95 16 22 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -23.84 11.32 55.43 0.63 -23.22 16 24 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.11 1.98 4.25 -3.71 -0.02 1.97 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.71 3.91 -51.93 -0.20 0.51 16 31 H 0.04 0.50 8.09 -51.92 -0.42 0.08 16 32 H 0.09 1.23 6.17 -51.93 -0.32 0.91 16 33 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 2.37 6.05 -51.93 -0.31 2.06 16 45 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.07 1.17 5.11 -51.93 -0.27 0.91 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -29.31 367.24 -9.80 -39.11 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.27 Total: 4.52 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.40 Total: -11.04 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.11 Total: -34.69 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.76 Total: -18.34 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.31 -9.80 -39.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.455 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds