Wall clock time and date at job start Tue Mar 31 2020 12:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00460 * 2 1 4 4 H 1.09005 * 109.47188 * 30.00236 * 3 2 1 5 5 C 1.52999 * 109.47484 * 270.00513 * 3 2 1 6 6 C 1.50707 * 109.46915 * 62.81937 * 5 3 2 7 7 C 1.38238 * 119.99840 * 269.72746 * 6 5 3 8 8 C 1.38236 * 119.99439 * 179.78801 * 7 6 5 9 9 C 1.38238 * 120.00463 * 0.44510 * 8 7 6 10 10 C 1.38242 * 119.99566 * 359.81028 * 9 8 7 11 11 C 1.38230 * 119.99915 * 359.97438 * 10 9 8 12 12 C 1.50692 * 109.47565 * 150.00178 * 3 2 1 13 13 O 1.21285 * 119.99800 * 8.56730 * 12 3 2 14 14 N 1.34775 * 120.00612 * 188.56416 * 12 3 2 15 15 C 1.46928 * 120.63539 * 184.95693 * 14 12 3 16 16 C 1.52761 * 109.00682 * 233.58325 * 15 14 12 17 17 C 1.53037 * 109.38124 * 305.58232 * 16 15 14 18 18 C 1.53038 * 109.53858 * 61.24310 * 17 16 15 19 19 H 1.09000 * 109.50102 * 58.58348 * 18 17 16 20 20 C 1.50699 * 109.49934 * 178.68126 * 18 17 16 21 21 H 1.07999 * 119.99959 * 119.84370 * 20 18 17 22 22 C 1.37873 * 120.00318 * 299.83789 * 20 18 17 23 23 N 1.31516 * 119.99900 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00490 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46920 * 60.00204 * 24 22 20 26 26 H 1.48499 * 109.47576 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47164 * 300.00526 * 24 22 20 28 28 C 1.46930 * 120.62684 * 5.22954 * 14 12 3 29 29 H 1.08994 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47368 * 59.99225 * 1 2 3 31 31 H 1.09009 * 109.46620 * 299.99351 * 1 2 3 32 32 H 1.08994 * 109.47894 * 182.81802 * 5 3 2 33 33 H 1.09001 * 109.47039 * 302.82170 * 5 3 2 34 34 H 1.07993 * 119.99923 * 359.97438 * 7 6 5 35 35 H 1.07995 * 119.99752 * 180.27784 * 8 7 6 36 36 H 1.07991 * 120.00178 * 179.83416 * 9 8 7 37 37 H 1.07999 * 119.99885 * 180.02562 * 10 9 8 38 38 H 1.08003 * 119.99572 * 179.97438 * 11 10 9 39 39 H 1.09005 * 109.58296 * 353.41734 * 15 14 12 40 40 H 1.09002 * 109.58670 * 113.83594 * 15 14 12 41 41 H 1.09003 * 109.56161 * 185.55510 * 16 15 14 42 42 H 1.08998 * 109.39058 * 65.51157 * 16 15 14 43 43 H 1.08998 * 109.46441 * 301.22080 * 17 16 15 44 44 H 1.09000 * 109.46170 * 181.26045 * 17 16 15 45 45 H 0.97001 * 120.00186 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.58478 * 246.15915 * 28 14 12 47 47 H 1.08993 * 109.58554 * 6.44323 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 0.8821 1.8796 -2.1323 7 6 0.3633 0.7912 -2.8086 8 6 -0.8637 0.8892 -3.4376 9 6 -1.5677 2.0783 -3.3982 10 6 -1.0464 3.1682 -2.7264 11 6 0.1786 3.0688 -2.0936 12 6 3.3387 1.2638 0.7103 13 8 3.8203 0.1987 1.0338 14 7 3.9916 2.4101 0.9861 15 6 5.3353 2.3821 1.5798 16 6 5.3392 3.2414 2.8428 17 6 4.8306 4.6445 2.5040 18 6 3.3946 4.5561 1.9823 19 1 2.7610 4.0910 2.7375 20 6 2.8833 5.9410 1.6795 21 1 2.5723 6.1946 0.6768 22 6 2.8125 6.8844 2.6825 23 7 3.1906 6.5755 3.9036 24 14 2.1794 8.6013 2.3071 25 1 0.7875 8.5150 1.7968 26 1 2.2019 9.4192 3.5463 27 1 3.0448 9.2343 1.2797 28 6 3.3708 3.7116 0.7044 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 2.7068 2.7454 -1.4430 33 1 2.8422 1.0510 -1.9708 34 1 0.9153 -0.1364 -2.8429 35 1 -1.2711 0.0376 -3.9621 36 1 -2.5251 2.1556 -3.8919 37 1 -1.5965 4.0970 -2.6952 38 1 0.5860 3.9205 -1.5691 39 1 5.6000 1.3563 1.8366 40 1 6.0579 2.7807 0.8676 41 1 6.3537 3.3074 3.2362 42 1 4.6878 2.7889 3.5904 43 1 5.4683 5.0871 1.7388 44 1 4.8540 5.2653 3.3996 45 1 3.1411 7.2392 4.6093 46 1 3.9299 4.2208 -0.0806 47 1 2.3405 3.5627 0.3814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597901623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:37 Heat of formation + Delta-G solvation = -72.670421 kcal Electronic energy + Delta-G solvation = -27701.198628 eV Core-core repulsion = 24041.127682 eV Total energy + Delta-G solvation = -3660.070946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.64749 -40.30964 -38.83010 -38.00877 -35.25027 -34.48117 -33.11766 -31.98247 -31.76810 -30.44238 -27.29469 -27.01384 -26.58286 -24.92447 -23.45863 -23.20562 -22.07549 -21.52929 -20.01935 -18.69042 -18.19183 -17.79942 -17.43645 -17.00837 -16.59924 -16.39126 -16.01791 -15.83478 -15.67066 -15.35207 -15.07909 -14.63572 -14.56195 -14.24189 -14.08874 -13.90588 -13.73384 -13.70248 -13.56949 -13.31577 -12.82421 -12.80879 -12.67614 -12.59510 -12.17360 -12.04092 -11.93453 -11.83852 -11.75223 -11.57486 -11.34824 -11.01168 -10.79247 -10.59557 -10.39363 -9.75577 -9.54864 -9.40544 -8.05858 -6.20978 0.41995 0.53195 1.46814 1.47198 1.49706 1.54640 1.80588 2.46187 2.88176 2.89480 3.22299 3.38801 3.76180 3.94118 4.00590 4.03597 4.13563 4.20631 4.22728 4.28259 4.35508 4.41868 4.47822 4.52628 4.55277 4.56284 4.65925 4.76008 4.78068 4.81426 4.85677 4.90271 4.95191 5.09958 5.16664 5.21389 5.25853 5.41519 5.58857 5.61649 5.65475 5.67439 5.72642 5.93417 6.02767 6.10382 6.14382 6.32866 6.44107 6.90306 7.10513 7.48148 8.98001 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.004713 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.666343 B = 5939.949366 C = 7862.259536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.378 6.378 3 C 0.088 3.912 4 H 0.087 0.913 5 C -0.092 4.092 6 C -0.093 4.093 7 C -0.113 4.113 8 C -0.125 4.125 9 C -0.122 4.122 10 C -0.126 4.126 11 C -0.128 4.128 12 C 0.510 3.490 13 O -0.574 6.574 14 N -0.600 5.600 15 C 0.116 3.884 16 C -0.125 4.125 17 C -0.106 4.106 18 C 0.037 3.963 19 H -0.010 1.010 20 C -0.528 4.528 21 H 0.067 0.933 22 C 0.017 3.983 23 N -0.917 5.917 24 Si 0.951 3.049 25 H -0.270 1.270 26 H -0.292 1.292 27 H -0.269 1.269 28 C 0.121 3.879 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.259 0.741 46 H 0.078 0.922 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 -7.756 -14.004 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.296 6.296 3 C 0.027 3.973 4 H 0.105 0.895 5 C -0.130 4.130 6 C -0.093 4.093 7 C -0.131 4.131 8 C -0.142 4.142 9 C -0.140 4.140 10 C -0.144 4.144 11 C -0.146 4.146 12 C 0.299 3.701 13 O -0.454 6.454 14 N -0.333 5.333 15 C -0.006 4.006 16 C -0.163 4.163 17 C -0.144 4.144 18 C 0.018 3.982 19 H 0.008 0.992 20 C -0.566 4.566 21 H 0.085 0.915 22 C -0.182 4.182 23 N -0.556 5.556 24 Si 0.777 3.223 25 H -0.195 1.195 26 H -0.218 1.218 27 H -0.194 1.194 28 C -0.001 4.001 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.141 0.859 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.333 -8.409 -13.662 17.247 hybrid contribution -0.347 1.294 0.664 1.495 sum -6.679 -7.115 -12.998 16.254 Atomic orbital electron populations 1.23394 0.79352 1.04235 1.01525 1.87944 1.21304 1.25320 1.95046 1.21825 0.92380 0.86845 0.96289 0.89498 1.21038 0.95980 1.03418 0.92558 1.19691 0.95841 0.94645 0.99170 1.21175 0.96673 0.98072 0.97140 1.21419 0.94533 0.98783 0.99505 1.21483 1.00696 0.92837 0.99005 1.21406 0.95533 0.99866 0.97547 1.21301 0.95868 0.97419 1.00039 1.20774 0.86879 0.83416 0.79070 1.90620 1.69167 1.30753 1.54858 1.48284 1.17938 1.06217 1.60859 1.21555 0.82937 1.00833 0.95245 1.21809 1.01241 0.96688 0.96564 1.21455 0.96967 0.94557 1.01450 1.18920 0.93589 0.93733 0.91980 0.99177 1.21384 1.42749 0.96644 0.95833 0.91509 1.25680 0.95503 1.02165 0.94883 1.70026 1.48397 1.35524 1.01670 0.85717 0.79209 0.80098 0.77267 1.19515 1.21846 1.19381 1.22067 0.97721 0.81307 0.98992 0.87906 0.91138 0.94486 0.88554 0.89831 0.85712 0.83827 0.83821 0.84608 0.85861 0.90301 0.89698 0.90004 0.94602 0.93915 0.91978 0.93201 0.90428 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 10.19 113.37 1.15 1.41 16 2 O -0.38 -12.06 9.71 -130.08 -1.26 -13.33 16 3 C 0.09 2.74 1.91 29.85 0.06 2.80 16 4 H 0.09 2.72 6.64 -2.38 -0.02 2.70 16 5 C -0.09 -2.37 4.74 29.85 0.14 -2.23 16 6 C -0.09 -2.14 3.74 -19.86 -0.07 -2.22 16 7 C -0.11 -2.27 6.91 22.27 0.15 -2.12 16 8 C -0.12 -2.05 9.92 22.27 0.22 -1.83 16 9 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 10 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 11 C -0.13 -2.86 9.70 22.27 0.22 -2.65 16 12 C 0.51 19.16 7.05 87.65 0.62 19.77 16 13 O -0.57 -25.31 15.94 15.85 0.25 -25.05 16 14 N -0.60 -21.65 2.98 -819.73 -2.44 -24.09 16 15 C 0.12 3.99 6.41 86.22 0.55 4.54 16 16 C -0.12 -4.68 6.06 30.53 0.19 -4.49 16 17 C -0.11 -4.68 4.96 30.62 0.15 -4.52 16 18 C 0.04 1.69 2.25 -11.46 -0.03 1.67 16 19 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 20 C -0.53 -26.09 8.56 25.60 0.22 -25.87 16 21 H 0.07 3.10 7.74 -2.91 -0.02 3.08 16 22 C 0.02 0.86 5.30 84.65 0.45 1.31 16 23 N -0.92 -50.64 11.32 21.45 0.24 -50.39 16 24 Si 0.95 40.72 29.54 68.60 2.03 42.75 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 C 0.12 4.37 4.25 86.36 0.37 4.74 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 1.56 3.91 -2.39 -0.01 1.55 16 31 H 0.04 0.90 8.09 -2.38 -0.02 0.88 16 32 H 0.10 2.40 6.17 -2.39 -0.01 2.38 16 33 H 0.08 2.16 8.08 -2.39 -0.02 2.14 16 34 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.14 1.57 8.06 -2.92 -0.02 1.55 16 37 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.08 2.76 7.00 -2.38 -0.02 2.75 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 3.18 6.05 -2.39 -0.01 3.16 16 45 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 46 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.08 2.77 5.11 -2.39 -0.01 2.75 16 Total: -1.00 -63.76 367.24 4.60 -59.16 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.95 Total: 24.55 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 4.83 Total: -13.58 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -2.20 Total: -74.49 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.01 Total: -38.38 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -63.76 4.60 -59.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.511 kcal (2) G-P(sol) polarization free energy of solvation -63.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds