Wall clock time and date at job start Tue Mar 31 2020 12:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38749 * 120.05570 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94051 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05778 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11161 * 359.95461 * 6 5 4 8 8 C 1.50703 * 119.97153 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46845 * 90.00197 * 8 7 6 10 10 C 1.50695 * 109.46845 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00361 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99935 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63089 * 359.72277 * 12 10 9 14 14 C 1.52759 * 109.01136 * 233.58391 * 13 12 10 15 15 C 1.53039 * 109.38255 * 305.58945 * 14 13 12 16 16 C 1.53042 * 109.53813 * 61.23530 * 15 14 13 17 17 H 1.08998 * 109.49510 * 58.59083 * 16 15 14 18 18 C 1.50708 * 109.49603 * 178.68349 * 16 15 14 19 19 H 1.08005 * 119.99690 * 359.83969 * 18 16 15 20 20 C 1.37872 * 119.99932 * 179.83680 * 18 16 15 21 21 N 1.31517 * 120.00071 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00199 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46624 * 60.00312 * 22 20 18 24 24 H 1.48492 * 109.47341 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47052 * 300.00643 * 22 20 18 26 26 C 1.46923 * 120.63106 * 180.02562 * 12 10 9 27 27 C 1.38169 * 120.05291 * 359.77102 * 7 6 5 28 28 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 30 30 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.03240 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.96622 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.94205 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.46985 * 209.99963 * 8 7 6 35 35 H 1.09001 * 109.46812 * 330.00384 * 8 7 6 36 36 H 1.09000 * 109.47006 * 300.00206 * 9 8 7 37 37 H 1.09002 * 109.46612 * 60.00084 * 9 8 7 38 38 H 1.09004 * 109.58570 * 353.41453 * 13 12 10 39 39 H 1.09000 * 109.59191 * 113.84319 * 13 12 10 40 40 H 1.08998 * 109.56905 * 185.55277 * 14 13 12 41 41 H 1.09001 * 109.35938 * 65.49495 * 14 13 12 42 42 H 1.09004 * 109.46117 * 301.21461 * 15 14 13 43 43 H 1.09003 * 109.44787 * 181.25232 * 15 14 13 44 44 H 0.96998 * 119.99773 * 180.02562 * 21 20 18 45 45 H 1.09007 * 109.58684 * 246.15672 * 26 12 10 46 46 H 1.09005 * 109.58764 * 6.58209 * 26 12 10 47 47 H 1.08007 * 120.02454 * 180.25308 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 5.5608 2.5984 -0.0029 9 6 6.0710 2.6263 1.4392 10 6 7.5758 2.7068 1.4381 11 8 8.1807 2.7392 0.3873 12 7 8.2496 2.7439 2.6048 13 6 7.5307 2.7128 3.8857 14 6 7.9765 3.9012 4.7356 15 6 9.5009 3.8865 4.8695 16 6 10.1377 4.0153 3.4838 17 1 9.8034 4.9405 3.0145 18 6 11.6386 4.0332 3.6197 19 1 12.0932 3.9626 4.5968 20 6 12.4312 4.1396 2.4966 21 7 11.8775 4.2260 1.3068 22 14 14.2914 4.1625 2.6650 23 1 14.7458 2.9027 3.3067 24 1 14.9088 4.2840 1.3199 25 1 14.6985 5.3193 3.5024 26 6 9.7166 2.8230 2.6198 27 6 3.4310 1.2849 0.0045 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3204 0.0014 32 1 1.3338 4.5114 0.0008 33 1 3.7921 4.6383 -0.0024 34 1 5.9711 1.7290 -0.5167 35 1 5.8752 3.5065 -0.5173 36 1 5.6606 3.4956 1.9531 37 1 5.7565 1.7182 1.9535 38 1 6.4578 2.7772 3.7042 39 1 7.7595 1.7854 4.4108 40 1 7.5237 3.8330 5.7247 41 1 7.6626 4.8275 4.2544 42 1 9.8161 2.9493 5.3283 43 1 9.8185 4.7214 5.4942 44 1 12.4352 4.3005 0.5166 45 1 10.1278 1.9047 3.0393 46 1 10.0857 2.9601 1.6034 47 1 4.0207 0.3800 0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597915421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:36 Heat of formation + Delta-G solvation = -65.526082 kcal Electronic energy + Delta-G solvation = -26171.916025 eV Core-core repulsion = 22512.154881 eV Total energy + Delta-G solvation = -3659.761144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35790 -39.42834 -37.88225 -36.69126 -33.75799 -33.27293 -31.73600 -30.82839 -30.00612 -29.22927 -27.55190 -25.49462 -24.92616 -23.44876 -22.65504 -21.78027 -20.97051 -19.59609 -18.09673 -17.94355 -16.66316 -16.49260 -16.15335 -15.99560 -15.97694 -15.16386 -15.05699 -14.51137 -14.24539 -13.96850 -13.66476 -13.49972 -13.24580 -13.17463 -12.78695 -12.61694 -12.52629 -12.21243 -11.96900 -11.90877 -11.81667 -11.56846 -11.20624 -11.03004 -10.94919 -10.86500 -10.79478 -10.50448 -10.35413 -10.21334 -9.86537 -9.26414 -9.08577 -8.98799 -8.76874 -8.40834 -8.35835 -7.68987 -5.97480 -4.06496 1.15650 1.30122 3.02211 3.31306 3.34114 3.39132 3.40367 3.56665 3.84078 4.44388 4.57276 4.62502 4.81347 4.82157 4.88859 5.08300 5.14353 5.18328 5.20285 5.28339 5.32395 5.34990 5.39916 5.50143 5.55428 5.71143 5.71590 5.83585 6.02202 6.03746 6.10898 6.20101 6.27004 6.29718 6.33472 6.54975 6.62176 6.63238 6.70420 6.88145 6.99649 7.18708 7.19232 7.34192 7.66947 7.90160 8.03040 8.31811 8.41672 8.93027 8.99407 9.58991 11.07695 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025437 B = 0.002465 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.477685 B =11354.931750 C =11740.904975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.217 4.217 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.035 4.035 8 C -0.067 4.067 9 C -0.133 4.133 10 C 0.504 3.496 11 O -0.539 6.539 12 N -0.607 5.607 13 C 0.109 3.891 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.880 5.880 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.112 3.888 27 C -0.149 4.149 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.264 0.736 45 H 0.040 0.960 46 H 0.123 0.877 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.444 -4.805 0.207 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.235 4.235 5 C -0.097 4.097 6 C -0.171 4.171 7 C -0.036 4.036 8 C -0.105 4.105 9 C -0.173 4.173 10 C 0.291 3.709 11 O -0.417 6.417 12 N -0.340 5.340 13 C -0.015 4.015 14 C -0.173 4.173 15 C -0.149 4.149 16 C 0.021 3.979 17 H 0.046 0.954 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.009 4.009 27 C -0.167 4.167 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.141 0.859 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.976 -4.974 -0.554 23.515 hybrid contribution 0.629 0.179 0.244 0.698 sum -22.346 -4.795 -0.310 22.857 Atomic orbital electron populations 1.23034 0.78567 1.03821 1.01263 1.86078 1.21240 1.27108 1.88827 1.19009 0.92297 0.84054 0.96585 1.21182 0.99785 0.92499 1.10067 1.20918 0.94601 0.96878 0.97346 1.21048 0.93637 0.98355 1.04019 1.19810 0.95987 0.92063 0.95704 1.20389 0.88888 1.04903 0.96304 1.21655 0.93703 1.03864 0.98053 1.20455 0.89283 0.77140 0.84039 1.90710 1.70169 1.50042 1.30753 1.48513 1.09412 1.71617 1.04492 1.21543 0.95764 0.98709 0.85487 1.21874 0.98814 0.98084 0.98488 1.21629 0.92254 1.00527 1.00447 1.18953 0.94954 0.94346 0.89635 0.95405 1.21043 0.90493 1.51534 0.92962 0.92458 1.25056 0.98706 0.94859 0.95429 1.69879 1.35257 1.48892 0.97746 0.86654 0.85630 0.78548 0.77146 1.20256 1.21262 1.20306 1.22259 0.73996 0.98274 1.06342 1.20358 0.91188 0.98456 1.06719 0.92751 0.92711 0.88335 0.85788 0.85867 0.85643 0.89926 0.89703 0.89272 0.89416 0.91084 0.92162 0.92249 0.92199 0.93213 0.93073 0.92599 0.94150 0.85931 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.35 10.50 -19.44 -0.20 -3.55 16 3 C 0.13 1.40 6.69 -39.22 -0.26 1.14 16 4 C -0.22 -2.08 9.04 -39.43 -0.36 -2.44 16 5 C -0.08 -0.76 10.04 -39.60 -0.40 -1.15 16 6 C -0.15 -1.64 9.70 -39.56 -0.38 -2.03 16 7 C -0.04 -0.42 5.13 -104.64 -0.54 -0.96 16 8 C -0.07 -0.90 4.63 -27.88 -0.13 -1.03 16 9 C -0.13 -1.84 4.03 -27.88 -0.11 -1.96 16 10 C 0.50 9.85 7.70 -10.99 -0.08 9.77 16 11 O -0.54 -12.94 15.40 5.55 0.09 -12.85 16 12 N -0.61 -12.10 2.98 -173.06 -0.52 -12.61 16 13 C 0.11 1.68 6.31 -3.94 -0.02 1.65 16 14 C -0.13 -2.15 6.06 -26.83 -0.16 -2.31 16 15 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 16 C 0.04 1.00 2.25 -91.67 -0.21 0.79 16 17 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.52 -14.21 8.56 -34.44 -0.29 -14.50 16 19 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -25.86 11.39 55.43 0.63 -25.23 16 22 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C 0.11 2.72 5.40 -3.73 -0.02 2.70 16 27 C -0.15 -1.76 9.64 -39.43 -0.38 -2.14 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.12 0.90 6.30 -52.49 -0.33 0.57 16 32 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.08 1.16 8.04 -51.93 -0.42 0.75 16 35 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 36 H 0.09 1.11 7.68 -51.93 -0.40 0.71 16 37 H 0.09 1.06 7.96 -51.93 -0.41 0.65 16 38 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 46 H 0.12 3.50 5.12 -51.93 -0.27 3.23 16 47 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -32.46 376.29 -9.48 -41.95 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.54 Total: 2.25 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.59 Total: -11.99 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.12 Total: -37.84 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.12 Total: -16.41 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.46 -9.48 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.579 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds