Wall clock time and date at job start Tue Mar 31 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99747 * 2 1 4 4 C 1.52998 * 109.46948 * 269.99704 * 3 2 1 5 5 O 1.42894 * 109.47092 * 65.00379 * 4 3 2 6 6 C 1.42898 * 114.00083 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47534 * 179.97438 * 6 5 4 8 8 C 1.52996 * 117.50410 * 243.62384 * 7 6 5 9 9 C 1.52996 * 117.49805 * 174.99777 * 7 6 5 10 10 C 1.34776 * 120.00460 * 179.97438 * 2 1 3 11 11 O 1.21274 * 120.00251 * 180.27827 * 10 2 1 12 12 C 1.50701 * 119.99438 * 0.02562 * 10 2 1 13 13 C 1.50702 * 109.47068 * 179.97438 * 12 10 2 14 14 C 1.37631 * 120.13070 * 265.00371 * 13 12 10 15 15 C 1.38620 * 120.24987 * 179.97438 * 14 13 12 16 16 C 1.38654 * 120.50099 * 0.02562 * 15 14 13 17 17 C 1.37603 * 120.24851 * 0.02562 * 16 15 14 18 18 C 1.40706 * 120.12539 * 84.72604 * 13 12 10 19 19 C 1.41397 * 120.23910 * 359.97438 * 18 13 12 20 20 H 1.07991 * 120.00664 * 333.89411 * 19 18 13 21 21 C 1.39942 * 119.99700 * 153.90279 * 19 18 13 22 22 N 1.30831 * 119.99998 * 343.70714 * 21 19 18 23 23 Si 1.86799 * 120.00463 * 163.70807 * 21 19 18 24 24 H 1.48502 * 109.46969 * 89.99560 * 23 21 19 25 25 H 1.48497 * 109.47820 * 209.99923 * 23 21 19 26 26 H 1.48501 * 109.46796 * 329.99922 * 23 21 19 27 27 H 1.08999 * 109.47619 * 270.00193 * 1 2 3 28 28 H 1.09001 * 109.47455 * 30.00135 * 1 2 3 29 29 H 1.09003 * 109.47167 * 150.00142 * 1 2 3 30 30 H 1.08995 * 109.47229 * 30.00093 * 3 2 1 31 31 H 1.09006 * 109.47004 * 149.99506 * 3 2 1 32 32 H 1.09005 * 109.47048 * 184.99960 * 4 3 2 33 33 H 1.08994 * 109.46975 * 304.99886 * 4 3 2 34 34 H 1.09003 * 109.47034 * 300.00090 * 6 5 4 35 35 H 1.09002 * 109.46930 * 59.99710 * 6 5 4 36 36 H 1.09000 * 115.54218 * 29.33227 * 7 6 5 37 37 H 1.09001 * 117.49644 * 359.97438 * 8 7 6 38 38 H 1.08996 * 117.50229 * 145.01833 * 8 7 6 39 39 H 1.09008 * 117.49606 * 214.97985 * 9 7 6 40 40 H 1.08998 * 117.50349 * 0.02562 * 9 7 6 41 41 H 1.08993 * 109.47309 * 299.99672 * 12 10 2 42 42 H 1.09004 * 109.47614 * 59.99985 * 12 10 2 43 43 H 1.08003 * 119.87609 * 359.97438 * 14 13 12 44 44 H 1.07998 * 119.75068 * 179.97438 * 15 14 13 45 45 H 1.07992 * 119.87666 * 180.02562 * 16 15 14 46 46 H 1.07995 * 120.12967 * 179.97438 * 17 16 15 47 47 H 0.96998 * 119.99718 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 8 1.2060 1.9935 -2.0814 6 6 1.3324 2.4174 -3.4402 7 6 -0.0566 2.6905 -4.0207 8 6 -0.5216 1.8117 -5.1836 9 6 -0.1299 3.2692 -5.4350 10 6 2.1389 -1.1671 0.0005 11 8 3.3516 -1.1671 0.0056 12 6 1.3854 -2.4722 0.0005 13 6 2.3647 -3.6177 0.0005 14 6 2.7348 -4.2102 -1.1853 15 6 3.6358 -5.2636 -1.1882 16 6 4.1737 -5.7329 0.0005 17 6 3.8172 -5.1564 1.1980 18 6 2.9086 -4.0818 1.2124 19 6 2.5405 -3.4766 2.4361 20 1 2.2083 -2.4492 2.4521 21 6 2.6069 -4.2090 3.6267 22 7 2.6947 -5.5138 3.5880 23 14 2.5702 -3.3239 5.2713 24 1 1.1637 -3.1838 5.7267 25 1 3.3390 -4.1065 6.2721 26 1 3.1787 -1.9774 5.1223 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6083 2.0284 0.5138 31 1 3.1498 1.1385 0.5139 32 1 3.0731 2.6065 -1.4438 33 1 2.9642 0.9131 -1.9814 34 1 1.9298 3.3282 -3.4825 35 1 1.8211 1.6351 -4.0208 36 1 -0.8098 3.0169 -3.3036 37 1 0.1623 1.0393 -5.5354 38 1 -1.5809 1.5597 -5.2318 39 1 -0.9317 3.9761 -5.6487 40 1 0.8114 3.4550 -5.9522 41 1 0.7584 -2.5298 0.8902 42 1 0.7590 -2.5303 -0.8897 43 1 2.3217 -3.8530 -2.1171 44 1 3.9203 -5.7229 -2.1234 45 1 4.8751 -6.5539 -0.0136 46 1 4.2370 -5.5237 2.1227 47 1 2.7404 -6.0215 4.4133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777005821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:50 Heat of formation + Delta-G solvation = -40.805254 kcal Electronic energy + Delta-G solvation = -26533.248432 eV Core-core repulsion = 22874.559263 eV Total energy + Delta-G solvation = -3658.689169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.51710 -38.49683 -37.38698 -36.67899 -34.86311 -33.56452 -31.87237 -30.15583 -29.37747 -27.19118 -26.75041 -25.76625 -24.90139 -22.80194 -22.64356 -20.91213 -20.85517 -19.92328 -18.46137 -17.14656 -17.07045 -16.45292 -16.21369 -15.68174 -15.47591 -15.16183 -14.96447 -14.47858 -14.35842 -13.70958 -13.51974 -13.20275 -13.08980 -12.55822 -12.48826 -12.45127 -12.10679 -12.04252 -11.82144 -11.70166 -11.53100 -11.51320 -11.14545 -11.05249 -10.94287 -10.90354 -10.70820 -10.64204 -10.45536 -10.34914 -9.62985 -9.42348 -9.31081 -9.10607 -9.03777 -8.25165 -7.25262 -7.22810 -6.68169 -4.28288 2.83421 3.01940 3.09970 3.15576 3.26509 3.31656 3.40244 3.53448 3.68544 3.98264 4.53259 4.60473 4.71304 4.77104 5.04466 5.08659 5.13253 5.25405 5.31526 5.36560 5.39804 5.43660 5.51181 5.60032 5.73611 5.76965 5.80584 5.88264 5.92398 5.93546 6.00218 6.10993 6.21680 6.34399 6.50539 6.56500 6.84832 6.90817 7.11740 7.14417 7.35509 7.48202 7.69542 7.87401 7.99576 8.13621 8.18641 8.37698 8.70652 8.90360 8.97889 9.07660 10.25983 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.003296 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.832510 B = 8492.525197 C = 9609.526455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.121 3.879 4 C 0.047 3.953 5 O -0.381 6.381 6 C 0.093 3.907 7 C -0.150 4.150 8 C -0.177 4.177 9 C -0.177 4.177 10 C 0.516 3.484 11 O -0.524 6.524 12 C -0.068 4.068 13 C -0.179 4.179 14 C -0.082 4.082 15 C -0.240 4.240 16 C -0.108 4.108 17 C -0.160 4.160 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.073 0.927 21 C 0.076 3.924 22 N -0.796 5.796 23 Si 0.902 3.098 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.262 1.262 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.117 0.883 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.666 14.742 -9.721 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.360 5.360 3 C -0.002 4.002 4 C -0.030 4.030 5 O -0.301 6.301 6 C 0.016 3.984 7 C -0.169 4.169 8 C -0.214 4.214 9 C -0.214 4.214 10 C 0.306 3.694 11 O -0.398 6.398 12 C -0.108 4.108 13 C -0.181 4.181 14 C -0.100 4.100 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.126 3.874 19 C -0.485 4.485 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.422 5.422 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.186 1.186 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.135 0.865 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.173 14.497 -9.452 18.374 hybrid contribution 0.167 0.380 0.581 0.714 sum -6.006 14.877 -8.871 18.333 Atomic orbital electron populations 1.21719 0.79677 1.03211 1.01125 1.47894 1.06921 1.05402 1.75760 1.21368 0.98920 0.85894 0.94036 1.23026 0.85923 0.99174 0.94913 1.87850 1.29969 1.87695 1.24543 1.21957 0.94951 0.98058 0.83415 1.22124 0.98395 1.05044 0.91298 1.23071 1.02268 0.93677 1.02337 1.22969 1.03315 0.96980 0.98105 1.21264 0.88420 0.85098 0.74637 1.90657 1.14175 1.87080 1.47894 1.20282 0.97754 0.90134 1.02595 1.19095 1.04149 1.00936 0.93910 1.20290 0.97852 0.96498 0.95392 1.20293 1.06389 1.03031 0.96201 1.20666 0.99512 0.98943 0.93502 1.21291 1.00237 0.99998 0.96360 1.17340 0.88266 0.90377 0.91401 1.19451 1.39412 0.98713 0.90878 0.90848 1.25877 0.92446 0.94544 1.01193 1.69826 1.36002 1.06440 1.29947 0.86415 0.79017 0.80769 0.81153 1.19552 1.20133 1.18560 0.93257 0.90814 0.91219 0.90323 0.88476 0.92855 0.92705 0.93240 0.93366 0.86918 0.88630 0.88575 0.88491 0.88778 0.88659 0.90754 0.89900 0.89749 0.89640 0.86544 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 10.06 59.84 0.60 1.69 16 2 N -0.62 -9.94 2.84 -181.58 -0.52 -10.46 16 3 C 0.12 1.67 5.81 -4.04 -0.02 1.64 16 4 C 0.05 0.60 6.28 37.16 0.23 0.83 16 5 O -0.38 -4.68 9.17 -35.23 -0.32 -5.00 16 6 C 0.09 0.94 6.22 37.16 0.23 1.17 16 7 C -0.15 -1.34 6.06 -90.62 -0.55 -1.89 16 8 C -0.18 -1.45 10.18 -26.73 -0.27 -1.72 16 9 C -0.18 -1.27 10.25 -26.73 -0.27 -1.55 16 10 C 0.52 10.49 7.28 -10.98 -0.08 10.41 16 11 O -0.52 -12.73 15.61 5.56 0.09 -12.64 16 12 C -0.07 -1.39 3.73 -29.03 -0.11 -1.50 16 13 C -0.18 -4.42 4.43 -103.91 -0.46 -4.88 16 14 C -0.08 -1.95 9.66 -39.66 -0.38 -2.33 16 15 C -0.24 -5.71 10.05 -39.29 -0.39 -6.11 16 16 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 17 C -0.16 -4.35 8.69 -38.87 -0.34 -4.69 16 18 C 0.13 3.51 5.56 -106.82 -0.59 2.91 16 19 C -0.45 -12.19 8.14 -37.74 -0.31 -12.49 16 20 H 0.07 1.93 6.67 -52.49 -0.35 1.58 16 21 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 22 N -0.80 -20.86 10.96 55.55 0.61 -20.25 16 23 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 26 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.83 7.11 -51.93 -0.37 0.46 16 29 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 30 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.10 1.46 7.42 -51.93 -0.39 1.08 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.51 7.87 -51.93 -0.41 0.10 16 36 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 0.80 8.03 -51.93 -0.42 0.39 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 1.93 7.05 -51.93 -0.37 1.56 16 42 H 0.07 1.31 7.31 -51.93 -0.38 0.93 16 43 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 44 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 46 H 0.12 3.25 6.20 -52.49 -0.33 2.93 16 47 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -31.29 386.86 -10.09 -41.38 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.54 Total: 6.74 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -3.20 Total: -19.72 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.09 Total: -30.71 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.24 Total: -17.64 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.29 -10.09 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777005821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.576 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds