Wall clock time and date at job start Tue Mar 31 2020 12:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 113.99936 * 2 1 4 4 H 1.08998 * 110.01495 * 28.60932 * 3 2 1 5 5 C 1.54269 * 110.07258 * 267.19324 * 3 2 1 6 6 C 1.54893 * 104.19231 * 264.30218 * 5 3 2 7 7 C 1.54966 * 102.77792 * 322.08333 * 6 5 3 8 8 C 1.53867 * 110.03368 * 149.99823 * 3 2 1 9 9 H 1.09001 * 110.03232 * 0.02562 * 8 3 2 10 10 C 1.52995 * 110.03705 * 238.61786 * 8 3 2 11 11 N 1.46497 * 109.47569 * 175.69069 * 10 8 3 12 12 C 1.34775 * 120.00253 * 180.02562 * 11 10 8 13 13 O 1.21284 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00379 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47404 * 180.02562 * 14 12 11 16 16 C 1.37643 * 120.12533 * 265.28115 * 15 14 12 17 17 C 1.38611 * 120.24676 * 180.30419 * 16 15 14 18 18 C 1.38664 * 120.49912 * 359.71065 * 17 16 15 19 19 C 1.37595 * 120.24933 * 359.97438 * 18 17 16 20 20 C 1.40697 * 120.13015 * 85.00075 * 15 14 12 21 21 C 1.41399 * 120.24134 * 359.97248 * 20 15 14 22 22 H 1.07993 * 120.00162 * 334.12654 * 21 20 15 23 23 C 1.39948 * 119.99606 * 153.85068 * 21 20 15 24 24 N 1.30823 * 119.99979 * 342.92778 * 23 21 20 25 25 Si 1.86796 * 119.99766 * 162.93199 * 23 21 20 26 26 H 1.48507 * 109.47209 * 94.51390 * 25 23 21 27 27 H 1.48505 * 109.47203 * 214.51288 * 25 23 21 28 28 H 1.48494 * 109.47392 * 334.51127 * 25 23 21 29 29 H 1.08992 * 109.47118 * 59.99863 * 1 2 3 30 30 H 1.08993 * 109.46475 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47004 * 299.99787 * 1 2 3 32 32 H 1.08999 * 110.48685 * 22.98058 * 5 3 2 33 33 H 1.08995 * 110.48683 * 145.49258 * 5 3 2 34 34 H 1.09000 * 110.75438 * 80.37107 * 6 5 3 35 35 H 1.08998 * 110.74995 * 203.55865 * 6 5 3 36 36 H 1.08996 * 110.47548 * 279.23772 * 7 6 5 37 37 H 1.08997 * 110.53028 * 156.56879 * 7 6 5 38 38 H 1.09004 * 109.47146 * 55.69074 * 10 8 3 39 39 H 1.09001 * 109.46919 * 295.69575 * 10 8 3 40 40 H 0.97000 * 119.99766 * 359.97438 * 11 10 8 41 41 H 1.09004 * 109.46758 * 59.99728 * 14 12 11 42 42 H 1.08997 * 109.46920 * 300.00153 * 14 12 11 43 43 H 1.07994 * 119.87967 * 359.97438 * 16 15 14 44 44 H 1.07993 * 119.75357 * 179.73380 * 17 16 15 45 45 H 1.07999 * 119.87282 * 179.97438 * 18 17 16 46 46 H 1.07997 * 120.12604 * 179.97438 * 19 18 17 47 47 H 0.97004 * 119.99794 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3406 2.0120 0.4904 5 6 2.2905 1.7604 -1.4473 6 6 3.7775 1.3943 -1.6792 7 6 4.4274 1.7161 -0.3098 8 6 3.3683 1.2779 0.7228 9 1 3.5843 0.2686 1.0732 10 6 3.3536 2.2508 1.9035 11 7 4.6131 2.1399 2.6435 12 6 4.8255 2.9070 3.7311 13 8 3.9741 3.6894 4.0970 14 6 6.1209 2.7925 4.4927 15 6 6.1059 3.7500 5.6563 16 6 6.6665 5.0006 5.5291 17 6 6.6597 5.8810 6.5997 18 6 6.0841 5.5160 7.8073 19 6 5.5122 4.2733 7.9551 20 6 5.5135 3.3712 6.8750 21 6 4.9288 2.0914 7.0151 22 1 4.5550 1.5704 6.1462 23 6 4.8398 1.4975 8.2792 24 7 5.5734 1.9454 9.2655 25 14 3.6736 0.0652 8.5581 26 1 4.4103 -1.2132 8.3890 27 1 3.1193 0.1388 9.9338 28 1 2.5642 0.1311 7.5733 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6513 1.2218 -2.1469 33 1 2.1405 2.8355 -1.5450 34 1 3.8822 0.3356 -1.9165 35 1 4.2082 2.0100 -2.4688 36 1 4.6252 2.7845 -0.2233 37 1 5.3466 1.1451 -0.1792 38 1 2.5214 2.0077 2.5643 39 1 3.2380 3.2695 1.5335 40 1 5.2939 1.5138 2.3511 41 1 6.9533 3.0357 3.8322 42 1 6.2361 1.7737 4.8624 43 1 7.1181 5.2951 4.5934 44 1 7.1056 6.8587 6.4925 45 1 6.0848 6.2097 8.6350 46 1 5.0649 3.9909 8.8966 47 1 5.5119 1.5335 10.1416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777110554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:24 Heat of formation + Delta-G solvation = -84.938509 kcal Electronic energy + Delta-G solvation = -26415.108203 eV Core-core repulsion = 22754.505273 eV Total energy + Delta-G solvation = -3660.602930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.80094 -38.88334 -37.29880 -36.30711 -33.99861 -33.57275 -31.71379 -29.96187 -29.39142 -28.47344 -27.02056 -26.46835 -25.03263 -23.84521 -21.09013 -20.88450 -20.41213 -20.17847 -19.15851 -17.22506 -17.08997 -16.50700 -15.75121 -15.54663 -15.45689 -15.22876 -14.88297 -14.42555 -14.35255 -14.14325 -13.72591 -13.49524 -13.16558 -12.84722 -12.61250 -12.51524 -12.00046 -11.92811 -11.68154 -11.55081 -11.51278 -11.30803 -11.13027 -11.05407 -10.93092 -10.88038 -10.81672 -10.77250 -10.65126 -10.35599 -9.81978 -9.43210 -9.33554 -9.12053 -9.07849 -8.64829 -7.26406 -7.24079 -6.69876 -4.29115 2.82668 3.01228 3.09873 3.15938 3.31066 3.40952 3.41383 3.83352 3.97807 4.29077 4.35882 4.64136 4.70653 4.98083 5.01484 5.10393 5.12505 5.22666 5.32842 5.39787 5.41200 5.50279 5.52926 5.63780 5.67306 5.77046 5.83938 5.87347 5.95568 5.99144 6.09927 6.15924 6.24545 6.33451 6.48775 6.55766 6.83441 6.86092 7.01068 7.13504 7.34222 7.47137 7.69256 7.94271 8.01978 8.13021 8.17922 8.36629 8.69785 8.93023 8.96792 9.06679 10.24595 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.003423 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.740015 B = 8177.249271 C = 9720.024697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.089 3.911 4 H 0.068 0.932 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.103 4.103 9 H 0.093 0.907 10 C 0.130 3.870 11 N -0.743 5.743 12 C 0.514 3.486 13 O -0.522 6.522 14 C -0.071 4.071 15 C -0.180 4.180 16 C -0.081 4.081 17 C -0.240 4.240 18 C -0.107 4.107 19 C -0.160 4.160 20 C 0.129 3.871 21 C -0.457 4.457 22 H 0.074 0.926 23 C 0.078 3.922 24 N -0.795 5.795 25 Si 0.901 3.099 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.261 1.261 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.396 0.604 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.527 -4.523 -18.061 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.031 3.969 4 H 0.086 0.914 5 C -0.183 4.183 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.122 4.122 9 H 0.111 0.889 10 C 0.006 3.994 11 N -0.398 5.398 12 C 0.302 3.698 13 O -0.396 6.396 14 C -0.111 4.111 15 C -0.182 4.182 16 C -0.100 4.100 17 C -0.260 4.260 18 C -0.126 4.126 19 C -0.179 4.179 20 C 0.127 3.873 21 C -0.487 4.487 22 H 0.092 0.908 23 C -0.140 4.140 24 N -0.421 5.421 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.185 1.185 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.229 0.771 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.133 0.867 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.002 -4.147 -17.513 18.680 hybrid contribution -0.485 -0.748 0.096 0.897 sum -5.487 -4.896 -17.417 18.906 Atomic orbital electron populations 1.22791 0.81232 1.02680 0.99994 1.87938 1.19491 1.27662 1.94949 1.22736 0.94363 0.84656 0.95141 0.91427 1.22858 0.97681 1.01155 0.96615 1.22448 0.94695 1.01501 0.97099 1.22465 0.97648 1.01744 0.93830 1.22101 0.94090 1.00874 0.95097 0.88901 1.21285 0.87664 0.98503 0.91965 1.46093 1.19148 1.44125 1.30443 1.21238 0.90026 0.79411 0.79166 1.90678 1.45983 1.36655 1.66289 1.20266 0.93134 1.02125 0.95543 1.19059 1.08409 0.95317 0.95397 1.20298 0.99564 0.93721 0.96379 1.20298 1.11475 0.99179 0.95029 1.20667 0.99553 0.96469 0.95871 1.21269 1.03945 0.92578 1.00151 1.17332 0.87622 0.92324 0.90033 1.19470 1.34538 1.01279 0.93363 0.90782 1.25868 0.94256 0.98137 0.95694 1.69830 1.31450 1.38151 1.02638 0.86419 0.81393 0.81009 0.78643 1.19608 1.20047 1.18532 0.94213 0.89723 0.93830 0.91076 0.90810 0.91236 0.91544 0.90939 0.91096 0.91904 0.91863 0.77079 0.90650 0.88598 0.89795 0.89705 0.89624 0.86653 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.34 16 2 O -0.38 -4.20 10.25 -35.23 -0.36 -4.56 16 3 C 0.09 0.89 3.04 -25.62 -0.08 0.81 16 4 H 0.07 0.67 7.33 -51.93 -0.38 0.29 16 5 C -0.15 -1.21 6.57 -25.07 -0.16 -1.37 16 6 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16 7 C -0.12 -1.05 6.05 -25.03 -0.15 -1.20 16 8 C -0.10 -1.07 2.78 -89.51 -0.25 -1.32 16 9 H 0.09 1.03 7.95 -51.93 -0.41 0.61 16 10 C 0.13 1.73 4.73 -4.05 -0.02 1.71 16 11 N -0.74 -10.87 5.39 -60.30 -0.33 -11.20 16 12 C 0.51 10.12 7.46 -10.99 -0.08 10.04 16 13 O -0.52 -12.72 16.03 5.55 0.09 -12.63 16 14 C -0.07 -1.40 5.18 -29.04 -0.15 -1.55 16 15 C -0.18 -4.40 4.43 -103.91 -0.46 -4.86 16 16 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 17 C -0.24 -5.70 10.05 -39.29 -0.39 -6.10 16 18 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 19 C -0.16 -4.35 8.69 -38.88 -0.34 -4.69 16 20 C 0.13 3.51 5.56 -106.83 -0.59 2.92 16 21 C -0.46 -12.22 8.14 -37.74 -0.31 -12.53 16 22 H 0.07 1.94 6.68 -52.49 -0.35 1.58 16 23 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 24 N -0.80 -20.79 11.01 55.55 0.61 -20.18 16 25 Si 0.90 19.17 29.59 -169.99 -5.03 14.14 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 28 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 40 H 0.40 4.58 8.33 -40.82 -0.34 4.24 16 41 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 42 H 0.10 1.87 7.06 -51.93 -0.37 1.50 16 43 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 46 H 0.12 3.22 6.24 -52.49 -0.33 2.89 16 47 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -31.80 381.93 -9.81 -41.61 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.62 Total: 8.45 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -2.93 Total: -21.38 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.29 Total: -31.38 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.27 Total: -17.20 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.80 -9.81 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777110554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.324 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds