Wall clock time and date at job start Tue Mar 31 2020 12:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 113.99936 * 2 1 4 4 H 1.08998 * 110.01495 * 28.60932 * 3 2 1 5 5 C 1.54269 * 110.07258 * 267.19324 * 3 2 1 6 6 C 1.54893 * 104.19231 * 264.30218 * 5 3 2 7 7 C 1.54966 * 102.77792 * 322.08333 * 6 5 3 8 8 C 1.53867 * 110.03368 * 149.99823 * 3 2 1 9 9 H 1.09001 * 110.03232 * 0.02562 * 8 3 2 10 10 C 1.52995 * 110.03705 * 238.61786 * 8 3 2 11 11 N 1.46497 * 109.47569 * 175.69069 * 10 8 3 12 12 C 1.34775 * 120.00253 * 180.02562 * 11 10 8 13 13 O 1.21284 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00379 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47404 * 180.02562 * 14 12 11 16 16 C 1.37643 * 120.12533 * 265.28115 * 15 14 12 17 17 C 1.38611 * 120.24676 * 180.30419 * 16 15 14 18 18 C 1.38664 * 120.49912 * 359.71065 * 17 16 15 19 19 C 1.37595 * 120.24933 * 359.97438 * 18 17 16 20 20 C 1.40697 * 120.13015 * 85.00075 * 15 14 12 21 21 C 1.41399 * 120.24134 * 359.97248 * 20 15 14 22 22 H 1.07993 * 120.00162 * 334.12654 * 21 20 15 23 23 C 1.39948 * 119.99606 * 153.85068 * 21 20 15 24 24 N 1.30823 * 119.99979 * 342.92778 * 23 21 20 25 25 Si 1.86796 * 119.99766 * 162.93199 * 23 21 20 26 26 H 1.48507 * 109.47209 * 94.51390 * 25 23 21 27 27 H 1.48505 * 109.47203 * 214.51288 * 25 23 21 28 28 H 1.48494 * 109.47392 * 334.51127 * 25 23 21 29 29 H 1.08992 * 109.47118 * 59.99863 * 1 2 3 30 30 H 1.08993 * 109.46475 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47004 * 299.99787 * 1 2 3 32 32 H 1.08999 * 110.48685 * 22.98058 * 5 3 2 33 33 H 1.08995 * 110.48683 * 145.49258 * 5 3 2 34 34 H 1.09000 * 110.75438 * 80.37107 * 6 5 3 35 35 H 1.08998 * 110.74995 * 203.55865 * 6 5 3 36 36 H 1.08996 * 110.47548 * 279.23772 * 7 6 5 37 37 H 1.08997 * 110.53028 * 156.56879 * 7 6 5 38 38 H 1.09004 * 109.47146 * 55.69074 * 10 8 3 39 39 H 1.09001 * 109.46919 * 295.69575 * 10 8 3 40 40 H 0.97000 * 119.99766 * 359.97438 * 11 10 8 41 41 H 1.09004 * 109.46758 * 59.99728 * 14 12 11 42 42 H 1.08997 * 109.46920 * 300.00153 * 14 12 11 43 43 H 1.07994 * 119.87967 * 359.97438 * 16 15 14 44 44 H 1.07993 * 119.75357 * 179.73380 * 17 16 15 45 45 H 1.07999 * 119.87282 * 179.97438 * 18 17 16 46 46 H 1.07997 * 120.12604 * 179.97438 * 19 18 17 47 47 H 0.97004 * 119.99794 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3406 2.0120 0.4904 5 6 2.2905 1.7604 -1.4473 6 6 3.7775 1.3943 -1.6792 7 6 4.4274 1.7161 -0.3098 8 6 3.3683 1.2779 0.7228 9 1 3.5843 0.2686 1.0732 10 6 3.3536 2.2508 1.9035 11 7 4.6131 2.1399 2.6435 12 6 4.8255 2.9070 3.7311 13 8 3.9741 3.6894 4.0970 14 6 6.1209 2.7925 4.4927 15 6 6.1059 3.7500 5.6563 16 6 6.6665 5.0006 5.5291 17 6 6.6597 5.8810 6.5997 18 6 6.0841 5.5160 7.8073 19 6 5.5122 4.2733 7.9551 20 6 5.5135 3.3712 6.8750 21 6 4.9288 2.0914 7.0151 22 1 4.5550 1.5704 6.1462 23 6 4.8398 1.4975 8.2792 24 7 5.5734 1.9454 9.2655 25 14 3.6736 0.0652 8.5581 26 1 4.4103 -1.2132 8.3890 27 1 3.1193 0.1388 9.9338 28 1 2.5642 0.1311 7.5733 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6513 1.2218 -2.1469 33 1 2.1405 2.8355 -1.5450 34 1 3.8822 0.3356 -1.9165 35 1 4.2082 2.0100 -2.4688 36 1 4.6252 2.7845 -0.2233 37 1 5.3466 1.1451 -0.1792 38 1 2.5214 2.0077 2.5643 39 1 3.2380 3.2695 1.5335 40 1 5.2939 1.5138 2.3511 41 1 6.9533 3.0357 3.8322 42 1 6.2361 1.7737 4.8624 43 1 7.1181 5.2951 4.5934 44 1 7.1056 6.8587 6.4925 45 1 6.0848 6.2097 8.6350 46 1 5.0649 3.9909 8.8966 47 1 5.5119 1.5335 10.1416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777110554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:23 Heat of formation + Delta-G solvation = -103.657470 kcal Electronic energy + Delta-G solvation = -26415.919918 eV Core-core repulsion = 22754.505273 eV Total energy + Delta-G solvation = -3661.414645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.96017 -40.12291 -39.05565 -37.20842 -35.49646 -35.23329 -33.44711 -31.37277 -30.99640 -29.17756 -28.49994 -27.37966 -26.84562 -24.96407 -22.81824 -22.21883 -21.56619 -21.26100 -20.60279 -19.06694 -18.05782 -17.84808 -17.28389 -16.71111 -16.66574 -16.27608 -16.19365 -16.06055 -15.45265 -15.32219 -15.09485 -14.81803 -14.57425 -14.36613 -14.18811 -13.53350 -13.49371 -13.37099 -12.91116 -12.81045 -12.74946 -12.68772 -12.59652 -12.48126 -12.25429 -12.13447 -11.95238 -11.82572 -11.57983 -11.48850 -11.30987 -11.20970 -11.01232 -10.80609 -10.49035 -10.00209 -9.21928 -9.14964 -8.60040 -6.28558 1.00160 1.14165 1.34904 1.46318 1.53126 1.85870 2.19573 2.30981 2.78046 2.88347 3.52956 3.58475 3.78485 3.86403 4.17671 4.20055 4.28375 4.37422 4.42499 4.42660 4.46996 4.50944 4.52158 4.63300 4.65634 4.72508 4.77058 4.82168 4.84793 4.87888 4.91147 5.00024 5.08405 5.12175 5.20404 5.20878 5.26158 5.37348 5.46770 5.55624 5.57333 5.78662 6.04862 6.17793 6.22381 6.27847 6.43142 6.68242 6.76468 6.99999 7.12322 7.46680 8.36819 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.003423 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.740015 B = 8177.249271 C = 9720.024697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.084 3.916 4 H 0.063 0.937 5 C -0.142 4.142 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.094 4.094 9 H 0.088 0.912 10 C 0.133 3.867 11 N -0.721 5.721 12 C 0.516 3.484 13 O -0.577 6.577 14 C -0.070 4.070 15 C -0.187 4.187 16 C -0.091 4.091 17 C -0.243 4.243 18 C -0.117 4.117 19 C -0.195 4.195 20 C 0.096 3.904 21 C -0.484 4.484 22 H 0.070 0.930 23 C 0.038 3.962 24 N -0.825 5.825 25 Si 0.969 3.031 26 H -0.255 1.255 27 H -0.267 1.267 28 H -0.269 1.269 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.061 0.939 40 H 0.414 0.586 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -5.188 -20.376 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.026 3.974 4 H 0.081 0.919 5 C -0.179 4.179 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.113 4.113 9 H 0.106 0.894 10 C 0.009 3.991 11 N -0.375 5.375 12 C 0.304 3.696 13 O -0.455 6.455 14 C -0.109 4.109 15 C -0.189 4.189 16 C -0.110 4.110 17 C -0.262 4.262 18 C -0.136 4.136 19 C -0.215 4.215 20 C 0.094 3.906 21 C -0.514 4.514 22 H 0.088 0.912 23 C -0.177 4.177 24 N -0.452 5.452 25 Si 0.791 3.209 26 H -0.179 1.179 27 H -0.192 1.192 28 H -0.194 1.194 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.251 0.749 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.123 0.877 46 H 0.113 0.887 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.427 -4.845 -19.867 20.923 hybrid contribution -0.630 -0.470 0.759 1.092 sum -5.057 -5.315 -19.109 20.469 Atomic orbital electron populations 1.22941 0.80044 1.03671 1.00529 1.87897 1.20894 1.28166 1.95130 1.22803 0.93891 0.84420 0.96263 0.91905 1.22845 0.98122 1.01659 0.95304 1.22439 0.94249 1.01745 0.96912 1.22464 0.97522 1.01760 0.93646 1.22020 0.95398 0.99550 0.94335 0.89381 1.21326 0.86060 0.99349 0.92363 1.45850 1.19976 1.42851 1.28819 1.21158 0.89322 0.79245 0.79871 1.90660 1.47496 1.39327 1.68064 1.20289 0.94703 1.01062 0.94882 1.19556 1.06828 0.96604 0.95869 1.20751 0.99166 0.93299 0.97737 1.20726 1.10478 1.00551 0.94446 1.20946 0.99257 0.96042 0.97334 1.21284 1.06084 0.94138 0.99961 1.17732 0.88724 0.92824 0.91360 1.19612 1.35991 1.01747 0.94058 0.91205 1.26634 0.95287 1.00659 0.95073 1.69884 1.32537 1.39568 1.03196 0.85393 0.78888 0.78238 0.78429 1.17927 1.19176 1.19388 0.92775 0.88583 0.94205 0.90597 0.90019 0.91323 0.90110 0.91107 0.89893 0.94173 0.92061 0.74946 0.86703 0.88557 0.86419 0.86637 0.87697 0.88679 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.85 113.37 1.23 1.61 16 2 O -0.40 -8.41 10.25 -148.98 -1.53 -9.94 16 3 C 0.08 1.59 3.04 31.32 0.10 1.68 16 4 H 0.06 1.21 7.33 -2.39 -0.02 1.20 16 5 C -0.14 -2.06 6.57 31.67 0.21 -1.85 16 6 C -0.12 -1.55 6.91 31.91 0.22 -1.33 16 7 C -0.12 -1.76 6.05 31.70 0.19 -1.57 16 8 C -0.09 -1.83 2.78 -10.07 -0.03 -1.86 16 9 H 0.09 1.83 7.95 -2.39 -0.02 1.81 16 10 C 0.13 3.47 4.73 86.38 0.41 3.88 16 11 N -0.72 -20.20 5.39 -463.07 -2.50 -22.70 16 12 C 0.52 20.04 7.46 87.66 0.65 20.69 16 13 O -0.58 -28.54 16.03 -3.04 -0.05 -28.59 16 14 C -0.07 -2.68 5.18 29.10 0.15 -2.53 16 15 C -0.19 -9.10 4.43 -19.41 -0.09 -9.18 16 16 C -0.09 -4.16 9.66 22.22 0.21 -3.94 16 17 C -0.24 -11.20 10.05 22.46 0.23 -10.97 16 18 C -0.12 -5.89 10.02 22.22 0.22 -5.66 16 19 C -0.20 -11.00 8.69 22.73 0.20 -10.80 16 20 C 0.10 5.35 5.56 -21.29 -0.12 5.23 16 21 C -0.48 -26.69 8.14 23.46 0.19 -26.50 16 22 H 0.07 3.76 6.68 -2.91 -0.02 3.74 16 23 C 0.04 1.98 5.14 85.26 0.44 2.42 16 24 N -0.83 -44.43 11.01 21.83 0.24 -44.19 16 25 Si 0.97 39.96 29.59 68.60 2.03 41.99 16 26 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 0.63 8.10 -2.39 -0.02 0.62 16 32 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.12 7.77 -2.39 -0.02 1.10 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.06 1.65 8.02 -2.39 -0.02 1.63 16 40 H 0.41 8.65 8.33 -92.71 -0.77 7.87 16 41 H 0.11 3.43 8.06 -2.38 -0.02 3.41 16 42 H 0.10 3.69 7.06 -2.39 -0.02 3.67 16 43 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 44 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 45 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 46 H 0.10 5.60 6.24 -2.91 -0.02 5.58 16 47 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 Total: -1.00 -71.08 381.93 2.80 -68.28 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.19 Total: 35.84 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 4.42 Total: -40.69 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -2.26 Total: -66.89 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.58 Total: -38.53 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -71.08 2.80 -68.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777110554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.379 kcal (2) G-P(sol) polarization free energy of solvation -71.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds