Wall clock time and date at job start Tue Mar 31 2020 12:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00281 * 2 1 4 4 C 1.53004 * 109.46950 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46793 * 183.05178 * 4 3 2 6 6 N 1.46500 * 112.85005 * 298.43281 * 5 4 3 7 7 C 1.34777 * 119.99671 * 295.68860 * 6 5 4 8 8 O 1.21277 * 120.00384 * 355.23998 * 7 6 5 9 9 C 1.50706 * 119.99699 * 175.24610 * 7 6 5 10 10 C 1.50704 * 109.46784 * 180.02562 * 9 7 6 11 11 C 1.37639 * 120.12633 * 265.29890 * 10 9 7 12 12 C 1.38614 * 120.24528 * 180.32273 * 11 10 9 13 13 C 1.38654 * 120.50552 * 359.67243 * 12 11 10 14 14 C 1.37601 * 120.24377 * 0.02562 * 13 12 11 15 15 C 1.40690 * 120.12888 * 85.00016 * 10 9 7 16 16 C 1.41398 * 120.24687 * 359.97265 * 15 10 9 17 17 H 1.08003 * 119.99626 * 28.78470 * 16 15 10 18 18 C 1.39939 * 120.00461 * 208.78565 * 16 15 10 19 19 N 1.30830 * 120.00404 * 197.49895 * 18 16 15 20 20 Si 1.86799 * 120.00052 * 17.49556 * 18 16 15 21 21 H 1.48500 * 109.47228 * 270.00009 * 20 18 16 22 22 H 1.48501 * 109.47043 * 29.99675 * 20 18 16 23 23 H 1.48499 * 109.47257 * 150.00006 * 20 18 16 24 24 C 1.53783 * 113.61560 * 69.62852 * 5 4 3 25 25 C 1.54052 * 86.98599 * 140.01675 * 24 5 4 26 26 C 1.53782 * 113.61272 * 167.23521 * 5 4 3 27 27 H 1.09003 * 109.47241 * 300.00108 * 1 2 3 28 28 H 1.09003 * 109.47370 * 59.99860 * 1 2 3 29 29 H 1.09002 * 109.47703 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47119 * 59.99985 * 3 2 1 31 31 H 1.08997 * 109.47141 * 300.00186 * 3 2 1 32 32 H 1.08999 * 109.47290 * 63.04973 * 4 3 2 33 33 H 1.08998 * 109.46809 * 303.05171 * 4 3 2 34 34 H 0.96997 * 120.00368 * 115.69448 * 6 5 4 35 35 H 1.09002 * 109.47370 * 59.99974 * 9 7 6 36 36 H 1.09001 * 109.46823 * 299.99524 * 9 7 6 37 37 H 1.08002 * 119.87930 * 0.02562 * 11 10 9 38 38 H 1.08000 * 119.74815 * 179.69993 * 12 11 10 39 39 H 1.07999 * 119.88125 * 180.02562 * 13 12 11 40 40 H 1.08007 * 120.12417 * 180.02562 * 14 13 12 41 41 H 0.96999 * 119.99360 * 354.89961 * 19 18 16 42 42 H 1.09003 * 113.61234 * 254.61361 * 24 5 4 43 43 H 1.09002 * 113.61527 * 25.51686 * 24 5 4 44 44 H 1.08995 * 113.62026 * 220.01996 * 25 24 5 45 45 H 1.09003 * 113.60886 * 89.11699 * 25 24 5 46 46 H 1.08992 * 113.61638 * 334.48140 * 26 5 4 47 47 H 1.08996 * 113.61434 * 105.38720 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1577 2.5802 0.0762 6 7 3.8063 3.4235 -1.0691 7 6 4.2172 3.0841 -2.3070 8 8 4.9492 2.1297 -2.4627 9 6 3.7672 3.8907 -3.4979 10 6 4.3618 3.3070 -4.7536 11 6 5.5363 3.8137 -5.2620 12 6 6.0819 3.2831 -6.4205 13 6 5.4567 2.2335 -7.0764 14 6 4.2851 1.7072 -6.5827 15 6 3.7220 2.2380 -5.4072 16 6 2.5188 1.7048 -4.8903 17 1 1.8479 2.3347 -4.3250 18 6 2.1971 0.3609 -5.1111 19 7 0.9668 -0.0529 -4.9472 20 14 3.5244 -0.8425 -5.6401 21 1 3.6008 -0.8749 -7.1228 22 1 4.8330 -0.4109 -5.0864 23 1 3.1946 -2.1982 -5.1317 24 6 3.9551 3.2711 1.4350 25 6 5.4021 3.7818 1.2994 26 6 5.6625 2.5671 0.3930 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 3.8605 0.6917 -0.9169 33 1 3.8537 0.5969 0.8605 34 1 3.2781 4.2261 -0.9365 35 1 4.0989 4.9228 -3.3840 36 1 2.6796 3.8638 -3.5648 37 1 6.0320 4.6308 -4.7591 38 1 7.0012 3.6900 -6.8151 39 1 5.8909 1.8276 -7.9781 40 1 3.8000 0.8894 -7.0949 41 1 0.2932 0.5536 -4.6018 42 1 3.2070 4.0636 1.4146 43 1 3.8135 2.5751 2.2619 44 1 5.9631 3.7578 2.2336 45 1 5.4809 4.7379 0.7817 46 1 5.9868 1.6792 0.9354 47 1 6.2919 2.7918 -0.4681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794165346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:12 Heat of formation + Delta-G solvation = -53.335150 kcal Electronic energy + Delta-G solvation = -27891.320114 eV Core-core repulsion = 24232.087608 eV Total energy + Delta-G solvation = -3659.232506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.37172 -38.37778 -37.48554 -37.05516 -33.60795 -32.88082 -31.83235 -31.09599 -30.09625 -27.11971 -26.41853 -25.84614 -24.61066 -24.13479 -21.80991 -21.36161 -20.70653 -19.27865 -18.84482 -18.03814 -16.52057 -16.37316 -15.89739 -15.68060 -15.37782 -15.03947 -14.70395 -14.61476 -14.13680 -13.91845 -13.59122 -13.47043 -13.21330 -12.84928 -12.46885 -12.39940 -12.31045 -12.06625 -11.84377 -11.48183 -11.35493 -11.20151 -11.12121 -10.93427 -10.85707 -10.72865 -10.52202 -10.25114 -10.20304 -10.09484 -9.65029 -9.45158 -9.21578 -9.03203 -8.89579 -8.61377 -7.60722 -7.53666 -7.11868 -4.43896 2.63551 2.80787 3.30717 3.36356 3.48919 3.57709 3.72351 3.91284 4.15218 4.45727 4.59096 4.67280 4.85889 4.91813 5.26682 5.31115 5.39176 5.49090 5.52032 5.58197 5.62377 5.67433 5.69113 5.70344 5.79309 5.84181 5.87070 5.96613 6.05380 6.11582 6.16091 6.18231 6.25099 6.26295 6.28640 6.54481 6.60058 6.79915 6.97744 7.11746 7.37769 7.41063 7.56701 7.72376 7.76810 7.90595 7.98353 8.06935 8.45816 8.66231 8.86707 8.92232 10.13253 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.006018 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.131079 B = 4651.527767 C = 6426.786009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.389 6.389 3 C 0.070 3.930 4 C -0.119 4.119 5 C 0.163 3.837 6 N -0.727 5.727 7 C 0.521 3.479 8 O -0.507 6.507 9 C -0.071 4.071 10 C -0.171 4.171 11 C -0.068 4.068 12 C -0.246 4.246 13 C -0.076 4.076 14 C -0.245 4.245 15 C 0.116 3.884 16 C -0.510 4.510 17 H 0.073 0.927 18 C 0.050 3.950 19 N -0.820 5.820 20 Si 1.069 2.931 21 H -0.280 1.280 22 H -0.258 1.258 23 H -0.293 1.293 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.137 4.137 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.394 0.606 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.281 0.719 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 6.859 12.430 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.308 6.308 3 C -0.006 4.006 4 C -0.157 4.157 5 C 0.075 3.925 6 N -0.382 5.382 7 C 0.308 3.692 8 O -0.379 6.379 9 C -0.111 4.111 10 C -0.173 4.173 11 C -0.086 4.086 12 C -0.266 4.266 13 C -0.094 4.094 14 C -0.264 4.264 15 C 0.113 3.887 16 C -0.539 4.539 17 H 0.091 0.909 18 C -0.169 4.169 19 N -0.443 5.443 20 Si 0.896 3.104 21 H -0.208 1.208 22 H -0.182 1.182 23 H -0.220 1.220 24 C -0.177 4.177 25 C -0.176 4.176 26 C -0.175 4.175 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.228 0.772 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.319 4.398 11.878 12.876 hybrid contribution -1.013 2.278 0.521 2.546 sum 1.307 6.676 12.399 14.142 Atomic orbital electron populations 1.22684 0.81340 1.02576 0.99586 1.87878 1.19478 1.28137 1.95337 1.22400 0.94101 0.84585 0.99561 1.21739 0.93125 0.96301 1.04583 1.21042 0.95561 0.90095 0.85767 1.45855 1.57944 1.28164 1.06239 1.20946 0.79783 0.85302 0.83129 1.90676 1.34466 1.27729 1.85074 1.20272 1.01989 0.97416 0.91390 1.18994 0.97726 1.03726 0.96824 1.20404 0.94701 0.97980 0.95507 1.20309 1.02410 1.03389 1.00459 1.20597 0.95132 0.95857 0.97831 1.21122 1.00121 1.05765 0.99386 1.17495 0.91343 0.90235 0.89649 1.20481 1.04148 0.97087 1.32188 0.90932 1.27100 0.99154 0.98598 0.92059 1.70577 1.01617 1.41601 1.30501 0.83661 0.75920 0.74215 0.76608 1.20776 1.18216 1.22031 1.23302 0.97618 1.00250 0.96558 1.22872 0.96283 0.98563 0.99931 1.23192 0.96194 0.98183 0.99925 0.94723 0.93897 0.89824 0.94180 0.93175 0.89121 0.90744 0.77200 0.90719 0.89121 0.89315 0.89099 0.88959 0.87857 0.90755 0.91189 0.88928 0.91467 0.90268 0.89577 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.39 -6.83 10.70 -35.23 -0.38 -7.21 16 3 C 0.07 1.09 5.72 37.16 0.21 1.31 16 4 C -0.12 -1.89 4.89 -26.73 -0.13 -2.02 16 5 C 0.16 2.19 0.53 -131.01 -0.07 2.12 16 6 N -0.73 -10.46 4.73 -46.85 -0.22 -10.68 16 7 C 0.52 9.94 7.37 -10.98 -0.08 9.86 16 8 O -0.51 -11.91 13.90 5.56 0.08 -11.83 16 9 C -0.07 -1.34 5.36 -29.03 -0.16 -1.50 16 10 C -0.17 -3.96 4.43 -103.91 -0.46 -4.42 16 11 C -0.07 -1.47 9.66 -39.66 -0.38 -1.86 16 12 C -0.25 -5.38 10.05 -39.29 -0.39 -5.77 16 13 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 14 C -0.25 -6.19 7.27 -38.87 -0.28 -6.47 16 15 C 0.12 3.00 5.13 -106.83 -0.55 2.45 16 16 C -0.51 -13.69 8.80 -37.74 -0.33 -14.02 16 17 H 0.07 1.95 6.59 -52.48 -0.35 1.60 16 18 C 0.05 1.36 5.42 -17.34 -0.09 1.26 16 19 N -0.82 -22.56 13.65 55.55 0.76 -21.80 16 20 Si 1.07 26.61 24.90 -169.99 -4.23 22.38 16 21 H -0.28 -6.55 6.44 56.52 0.36 -6.19 16 22 H -0.26 -6.69 7.03 56.52 0.40 -6.30 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C -0.14 -1.37 6.82 -25.77 -0.18 -1.55 16 25 C -0.14 -1.39 8.00 -25.78 -0.21 -1.60 16 26 C -0.14 -1.79 6.98 -25.92 -0.18 -1.97 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.51 7.68 -51.93 -0.40 0.11 16 31 H 0.05 0.87 7.91 -51.93 -0.41 0.46 16 32 H 0.09 1.86 6.91 -51.93 -0.36 1.50 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.39 4.43 8.65 -40.82 -0.35 4.08 16 35 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 36 H 0.09 1.72 6.51 -51.93 -0.34 1.38 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.10 2.61 4.42 -52.48 -0.23 2.37 16 41 H 0.28 7.47 8.73 -40.82 -0.36 7.11 16 42 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 43 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 47 H 0.08 1.24 7.34 -51.93 -0.38 0.86 16 LS Contribution 376.04 15.07 5.67 5.67 Total: -1.00 -31.63 376.04 -8.40 -40.02 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.50 Total: 8.16 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -2.57 Total: -24.71 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.54 Total: -32.48 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.30 Total: -19.04 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -4.23 Total: 22.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.63 -8.40 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794165346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.311 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds