Wall clock time and date at job start Tue Mar 31 2020 12:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00281 * 2 1 4 4 C 1.53004 * 109.46950 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46793 * 183.05178 * 4 3 2 6 6 N 1.46500 * 112.85005 * 298.43281 * 5 4 3 7 7 C 1.34777 * 119.99671 * 295.68860 * 6 5 4 8 8 O 1.21277 * 120.00384 * 355.23998 * 7 6 5 9 9 C 1.50706 * 119.99699 * 175.24610 * 7 6 5 10 10 C 1.50704 * 109.46784 * 180.02562 * 9 7 6 11 11 C 1.37639 * 120.12633 * 265.29890 * 10 9 7 12 12 C 1.38614 * 120.24528 * 180.32273 * 11 10 9 13 13 C 1.38654 * 120.50552 * 359.67243 * 12 11 10 14 14 C 1.37601 * 120.24377 * 0.02562 * 13 12 11 15 15 C 1.40690 * 120.12888 * 85.00016 * 10 9 7 16 16 C 1.41398 * 120.24687 * 359.97265 * 15 10 9 17 17 H 1.08003 * 119.99626 * 28.78470 * 16 15 10 18 18 C 1.39939 * 120.00461 * 208.78565 * 16 15 10 19 19 N 1.30830 * 120.00404 * 197.49895 * 18 16 15 20 20 Si 1.86799 * 120.00052 * 17.49556 * 18 16 15 21 21 H 1.48500 * 109.47228 * 270.00009 * 20 18 16 22 22 H 1.48501 * 109.47043 * 29.99675 * 20 18 16 23 23 H 1.48499 * 109.47257 * 150.00006 * 20 18 16 24 24 C 1.53783 * 113.61560 * 69.62852 * 5 4 3 25 25 C 1.54052 * 86.98599 * 140.01675 * 24 5 4 26 26 C 1.53782 * 113.61272 * 167.23521 * 5 4 3 27 27 H 1.09003 * 109.47241 * 300.00108 * 1 2 3 28 28 H 1.09003 * 109.47370 * 59.99860 * 1 2 3 29 29 H 1.09002 * 109.47703 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47119 * 59.99985 * 3 2 1 31 31 H 1.08997 * 109.47141 * 300.00186 * 3 2 1 32 32 H 1.08999 * 109.47290 * 63.04973 * 4 3 2 33 33 H 1.08998 * 109.46809 * 303.05171 * 4 3 2 34 34 H 0.96997 * 120.00368 * 115.69448 * 6 5 4 35 35 H 1.09002 * 109.47370 * 59.99974 * 9 7 6 36 36 H 1.09001 * 109.46823 * 299.99524 * 9 7 6 37 37 H 1.08002 * 119.87930 * 0.02562 * 11 10 9 38 38 H 1.08000 * 119.74815 * 179.69993 * 12 11 10 39 39 H 1.07999 * 119.88125 * 180.02562 * 13 12 11 40 40 H 1.08007 * 120.12417 * 180.02562 * 14 13 12 41 41 H 0.96999 * 119.99360 * 354.89961 * 19 18 16 42 42 H 1.09003 * 113.61234 * 254.61361 * 24 5 4 43 43 H 1.09002 * 113.61527 * 25.51686 * 24 5 4 44 44 H 1.08995 * 113.62026 * 220.01996 * 25 24 5 45 45 H 1.09003 * 113.60886 * 89.11699 * 25 24 5 46 46 H 1.08992 * 113.61638 * 334.48140 * 26 5 4 47 47 H 1.08996 * 113.61434 * 105.38720 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1577 2.5802 0.0762 6 7 3.8063 3.4235 -1.0691 7 6 4.2172 3.0841 -2.3070 8 8 4.9492 2.1297 -2.4627 9 6 3.7672 3.8907 -3.4979 10 6 4.3618 3.3070 -4.7536 11 6 5.5363 3.8137 -5.2620 12 6 6.0819 3.2831 -6.4205 13 6 5.4567 2.2335 -7.0764 14 6 4.2851 1.7072 -6.5827 15 6 3.7220 2.2380 -5.4072 16 6 2.5188 1.7048 -4.8903 17 1 1.8479 2.3347 -4.3250 18 6 2.1971 0.3609 -5.1111 19 7 0.9668 -0.0529 -4.9472 20 14 3.5244 -0.8425 -5.6401 21 1 3.6008 -0.8749 -7.1228 22 1 4.8330 -0.4109 -5.0864 23 1 3.1946 -2.1982 -5.1317 24 6 3.9551 3.2711 1.4350 25 6 5.4021 3.7818 1.2994 26 6 5.6625 2.5671 0.3930 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 3.8605 0.6917 -0.9169 33 1 3.8537 0.5969 0.8605 34 1 3.2781 4.2261 -0.9365 35 1 4.0989 4.9228 -3.3840 36 1 2.6796 3.8638 -3.5648 37 1 6.0320 4.6308 -4.7591 38 1 7.0012 3.6900 -6.8151 39 1 5.8909 1.8276 -7.9781 40 1 3.8000 0.8894 -7.0949 41 1 0.2932 0.5536 -4.6018 42 1 3.2070 4.0636 1.4146 43 1 3.8135 2.5751 2.2619 44 1 5.9631 3.7578 2.2336 45 1 5.4809 4.7379 0.7817 46 1 5.9868 1.6792 0.9354 47 1 6.2919 2.7918 -0.4681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794165346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:11 Heat of formation + Delta-G solvation = -73.821889 kcal Electronic energy + Delta-G solvation = -27892.208486 eV Core-core repulsion = 24232.087608 eV Total energy + Delta-G solvation = -3660.120877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.59039 -39.97576 -38.86827 -38.49316 -35.59382 -34.23860 -33.39427 -32.42302 -31.99030 -28.69542 -27.64375 -26.77401 -26.43369 -25.33772 -23.34615 -22.91829 -22.10243 -20.92917 -20.04669 -20.01329 -17.91401 -17.60611 -17.30324 -17.07430 -16.72467 -16.57964 -16.12358 -15.88714 -15.79119 -15.59066 -15.17002 -14.90007 -14.60141 -14.43453 -13.99285 -13.90342 -13.64805 -13.44067 -13.27100 -13.08056 -12.84285 -12.63008 -12.59836 -12.29673 -12.17758 -12.05724 -11.95803 -11.79854 -11.62466 -11.59705 -11.26012 -11.14549 -10.86016 -10.71439 -10.52913 -9.89290 -9.56178 -9.33769 -9.13874 -6.47172 0.81751 0.90623 1.27746 1.49066 1.69064 1.87526 2.13240 2.31161 2.71399 2.75145 3.47531 3.53917 3.65491 3.92497 3.99030 4.04064 4.10936 4.20068 4.26133 4.32121 4.39853 4.42421 4.45489 4.51227 4.53529 4.63185 4.68498 4.73920 4.79518 4.83260 4.88462 4.92508 4.98129 5.05342 5.07338 5.16742 5.22056 5.25509 5.39457 5.51093 5.61917 5.80027 5.83691 5.90073 6.03211 6.17973 6.19242 6.48984 6.70836 6.76514 6.89449 7.51961 8.07424 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.006018 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.131079 B = 4651.527767 C = 6426.786009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.422 6.422 3 C 0.074 3.926 4 C -0.116 4.116 5 C 0.148 3.852 6 N -0.707 5.707 7 C 0.521 3.479 8 O -0.560 6.560 9 C -0.072 4.072 10 C -0.174 4.174 11 C -0.079 4.079 12 C -0.232 4.232 13 C -0.089 4.089 14 C -0.267 4.267 15 C 0.086 3.914 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.018 3.982 19 N -0.850 5.850 20 Si 1.094 2.906 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.290 1.290 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.146 4.146 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.413 0.587 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.276 0.724 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 9.447 14.226 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.342 6.342 3 C -0.002 4.002 4 C -0.154 4.154 5 C 0.061 3.939 6 N -0.362 5.362 7 C 0.309 3.691 8 O -0.437 6.437 9 C -0.112 4.112 10 C -0.175 4.175 11 C -0.097 4.097 12 C -0.251 4.251 13 C -0.107 4.107 14 C -0.286 4.286 15 C 0.083 3.917 16 C -0.558 4.558 17 H 0.075 0.925 18 C -0.196 4.196 19 N -0.475 5.475 20 Si 0.920 3.080 21 H -0.183 1.183 22 H -0.206 1.206 23 H -0.218 1.218 24 C -0.157 4.157 25 C -0.160 4.160 26 C -0.184 4.184 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.250 0.750 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.128 0.872 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.630 7.027 13.684 15.806 hybrid contribution -1.243 1.621 -0.049 2.043 sum 2.387 8.648 13.636 16.322 Atomic orbital electron populations 1.22850 0.79748 1.03581 1.00395 1.87836 1.21423 1.29414 1.95521 1.22432 0.93697 0.84083 1.00026 1.21723 0.93662 0.97826 1.02227 1.21317 0.96059 0.89186 0.87336 1.45597 1.56762 1.28524 1.05276 1.20919 0.79251 0.84472 0.84498 1.90662 1.37154 1.29845 1.86003 1.20326 1.01483 0.99436 0.89951 1.19496 0.97961 1.02313 0.97741 1.20875 0.94220 0.98851 0.95735 1.20870 1.02858 1.01804 0.99552 1.20988 0.94453 0.96176 0.99060 1.21288 1.01453 1.06179 0.99684 1.17784 0.91661 0.91750 0.90489 1.20402 1.05040 0.97036 1.33299 0.92460 1.27700 0.99796 0.99715 0.92341 1.70607 1.01900 1.41589 1.33395 0.83296 0.73660 0.73342 0.77735 1.18273 1.20563 1.21754 1.23282 0.98183 1.00479 0.93720 1.22817 0.96395 0.96951 0.99880 1.23254 0.95103 1.00350 0.99730 0.91346 0.95500 0.88908 0.90182 0.95837 0.94912 0.89208 0.75040 0.86464 0.89701 0.85738 0.85437 0.85947 0.88687 0.91333 0.88836 0.87183 0.89302 0.89819 0.89202 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.42 -15.10 10.70 -148.98 -1.59 -16.70 16 3 C 0.07 2.30 5.72 71.98 0.41 2.71 16 4 C -0.12 -3.74 4.89 30.59 0.15 -3.60 16 5 C 0.15 3.81 0.53 4.13 0.00 3.81 16 6 N -0.71 -19.67 4.73 -420.54 -1.99 -21.66 16 7 C 0.52 20.05 7.37 87.66 0.65 20.69 16 8 O -0.56 -27.37 13.90 -3.02 -0.04 -27.41 16 9 C -0.07 -2.70 5.36 29.10 0.16 -2.54 16 10 C -0.17 -7.96 4.43 -19.41 -0.09 -8.05 16 11 C -0.08 -3.23 9.66 22.22 0.21 -3.02 16 12 C -0.23 -9.39 10.05 22.46 0.23 -9.16 16 13 C -0.09 -3.90 10.02 22.22 0.22 -3.68 16 14 C -0.27 -13.59 7.27 22.73 0.17 -13.43 16 15 C 0.09 4.54 5.13 -21.29 -0.11 4.43 16 16 C -0.53 -29.85 8.80 23.46 0.21 -29.64 16 17 H 0.06 3.29 6.59 -2.91 -0.02 3.27 16 18 C 0.02 1.04 5.42 85.25 0.46 1.50 16 19 N -0.85 -49.45 13.65 21.83 0.30 -49.15 16 20 Si 1.09 56.29 24.90 68.60 1.71 58.00 16 21 H -0.26 -12.03 6.44 99.48 0.64 -11.39 16 22 H -0.28 -15.22 7.03 99.48 0.70 -14.52 16 23 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 24 C -0.12 -1.86 6.82 31.21 0.21 -1.64 16 25 C -0.12 -2.02 8.00 31.21 0.25 -1.77 16 26 C -0.15 -3.69 6.98 31.12 0.22 -3.47 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.03 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.08 1.83 7.68 -2.39 -0.02 1.81 16 31 H 0.02 0.84 7.91 -2.39 -0.02 0.82 16 32 H 0.03 1.43 6.91 -2.39 -0.02 1.42 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.41 8.31 8.65 -92.71 -0.80 7.51 16 35 H 0.12 3.29 8.06 -2.39 -0.02 3.27 16 36 H 0.08 3.27 6.51 -2.39 -0.02 3.26 16 37 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.10 4.89 4.42 -2.91 -0.01 4.88 16 41 H 0.28 15.68 8.73 -92.71 -0.81 14.87 16 42 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 43 H 0.11 1.43 8.10 -2.39 -0.02 1.41 16 44 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.09 2.15 8.10 -2.39 -0.02 2.13 16 47 H 0.04 1.45 7.34 -2.39 -0.02 1.43 16 Total: -1.00 -74.87 376.04 3.03 -71.85 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.05 Total: 29.82 kcal Atomic # 6 Polarization: -49.35 SS G_CDS: 4.59 Total: -44.75 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -1.69 Total: -70.81 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.64 Total: -44.10 kcal Atomic # 14 Polarization: 56.29 SS G_CDS: 1.71 Total: 58.00 kcal Total: -74.87 3.03 -71.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794165346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.976 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds