Wall clock time and date at job start Tue Mar 31 2020 12:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35991 * 116.99928 * 2 1 4 4 C 1.38561 * 120.07841 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.00433 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14367 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.92420 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47066 * 90.00031 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.34464 * 34.29471 * 9 8 7 11 11 C 1.51105 * 110.38355 * 272.01002 * 9 8 7 12 12 C 1.30526 * 111.10217 * 224.75222 * 11 9 8 13 13 C 1.51101 * 111.10465 * 359.97438 * 12 11 9 14 14 C 1.54628 * 110.38793 * 156.58679 * 9 8 7 15 15 C 1.38240 * 120.14455 * 0.27575 * 6 5 4 16 16 C 1.38565 * 120.00067 * 359.49356 * 15 6 5 17 17 O 1.35996 * 120.06875 * 180.25131 * 16 15 6 18 18 C 1.42900 * 117.00309 * 0.23600 * 17 16 15 19 19 C 1.53000 * 109.46759 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.46658 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00453 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99799 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00062 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00174 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46813 * 89.99760 * 24 22 20 26 26 H 1.48492 * 109.47439 * 210.00351 * 24 22 20 27 27 H 1.48499 * 109.46736 * 330.00666 * 24 22 20 28 28 H 1.08996 * 109.47128 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46811 * 300.00224 * 1 2 3 30 30 H 1.09000 * 109.47336 * 60.00036 * 1 2 3 31 31 H 1.08000 * 119.99780 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.92652 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47558 * 330.00195 * 7 6 5 34 34 H 1.08998 * 109.47216 * 209.99857 * 7 6 5 35 35 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 36 36 H 1.07997 * 124.45155 * 44.73227 * 11 9 8 37 37 H 1.08003 * 124.44645 * 180.02562 * 12 11 9 38 38 H 1.09008 * 110.38486 * 135.24660 * 13 12 11 39 39 H 1.08994 * 110.38856 * 257.62549 * 13 12 11 40 40 H 1.09000 * 111.03684 * 261.47549 * 14 9 8 41 41 H 1.09008 * 111.03627 * 25.40836 * 14 9 8 42 42 H 1.08006 * 119.99855 * 179.74309 * 15 6 5 43 43 H 1.09002 * 109.46568 * 299.99188 * 18 17 16 44 44 H 1.08996 * 109.47219 * 59.99719 * 18 17 16 45 45 H 1.08995 * 109.47404 * 299.99097 * 19 18 17 46 46 H 1.08996 * 109.47368 * 59.99952 * 19 18 17 47 47 H 0.97002 * 120.00176 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 3.3030 3.6798 -0.0005 7 6 3.9837 5.0242 -0.0005 8 7 4.2044 5.4614 1.3845 9 6 4.8672 6.7718 1.4237 10 1 4.5347 7.3897 0.5896 11 6 6.3684 6.6036 1.3885 12 6 6.9486 7.3761 2.2661 13 6 5.9311 8.1888 3.0325 14 6 4.5799 7.4808 2.7675 15 6 4.0603 2.5233 -0.0052 16 6 3.4359 1.2863 0.0001 17 8 4.1795 0.1476 0.0007 18 6 5.6003 0.3006 0.0008 19 6 6.2617 -1.0791 0.0021 20 6 7.7601 -0.9177 0.0016 21 1 8.1969 0.0700 0.0001 22 6 8.5733 -2.0312 0.0032 23 7 8.0415 -3.2339 0.0045 24 14 10.4306 -1.8313 0.0018 25 1 10.9235 -1.7758 1.4016 26 1 11.0522 -2.9849 -0.6966 27 1 10.7926 -0.5739 -0.7005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2147 2.3197 -0.0014 32 1 1.3343 4.5115 -0.0019 33 1 3.3541 5.7504 -0.5147 34 1 4.9421 4.9463 -0.5139 35 1 4.7317 4.7735 1.9011 36 1 6.8925 5.9321 0.7246 37 1 8.0158 7.4283 2.4232 38 1 6.1623 8.1798 4.0977 39 1 5.9023 9.2120 2.6580 40 1 3.7713 8.2042 2.6632 41 1 4.3568 6.7573 3.5517 42 1 5.1386 2.5839 -0.0090 43 1 5.9066 0.8499 -0.8895 44 1 5.9064 0.8508 0.8906 45 1 5.9554 -1.6280 0.8926 46 1 5.9556 -1.6296 -0.8874 47 1 8.6136 -4.0173 0.0060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850358237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:05 Heat of formation + Delta-G solvation = -38.811295 kcal Electronic energy + Delta-G solvation = -25733.656334 eV Core-core repulsion = 22075.053630 eV Total energy + Delta-G solvation = -3658.602704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.32687 -39.20330 -38.11904 -37.10081 -34.48753 -33.33278 -30.79581 -30.45047 -29.33643 -29.17974 -27.68130 -26.44755 -25.08023 -24.07353 -22.39362 -21.27827 -20.80694 -20.44474 -19.14719 -18.24030 -17.06479 -16.52880 -16.35728 -15.93796 -15.84822 -15.72773 -14.96007 -14.74705 -14.58774 -14.45449 -14.14611 -13.95368 -13.85204 -12.74415 -12.66632 -12.57679 -12.32732 -12.30253 -12.07346 -11.87674 -11.74690 -11.60285 -11.47667 -11.43987 -11.17749 -11.02416 -10.91314 -10.79035 -10.72146 -10.51819 -9.81226 -9.63542 -9.39951 -9.27403 -8.60661 -8.43304 -8.41158 -7.46336 -6.08085 -4.12748 1.41909 1.63058 1.98501 3.28054 3.33861 3.36550 3.44708 3.76971 3.83758 4.20750 4.41962 4.43601 4.49465 4.80355 4.87046 4.93135 5.05349 5.07057 5.19191 5.20162 5.24153 5.28114 5.28964 5.34945 5.46788 5.51460 5.52729 5.59420 5.62971 5.66940 5.86319 5.90278 5.96088 6.06395 6.06709 6.24671 6.31977 6.37650 6.55310 6.65164 6.74588 6.84584 6.90728 7.24359 7.35718 7.58616 7.68784 7.86177 8.13525 8.26702 8.92901 9.51228 11.03500 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.003747 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.789972 B = 7471.804854 C =11039.040832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.090 3.910 4 C -0.176 4.176 5 C -0.108 4.108 6 C -0.083 4.083 7 C 0.103 3.897 8 N -0.675 5.675 9 C 0.107 3.893 10 H 0.086 0.914 11 C -0.204 4.204 12 C -0.154 4.154 13 C -0.105 4.105 14 C -0.111 4.111 15 C -0.172 4.172 16 C 0.119 3.881 17 O -0.304 6.304 18 C 0.065 3.935 19 C 0.026 3.974 20 C -0.526 4.526 21 H 0.057 0.943 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.898 3.102 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.348 0.652 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.133 0.867 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.290 20.800 2.318 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.045 3.955 4 C -0.195 4.195 5 C -0.127 4.127 6 C -0.084 4.084 7 C -0.025 4.025 8 N -0.305 5.305 9 C -0.003 4.003 10 H 0.104 0.896 11 C -0.223 4.223 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.149 4.149 15 C -0.191 4.191 16 C 0.072 3.928 17 O -0.218 6.218 18 C -0.009 4.009 19 C -0.011 4.011 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.725 3.275 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.151 0.849 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.867 20.456 2.372 24.282 hybrid contribution 1.991 0.007 -0.323 2.017 sum -10.876 20.463 2.049 23.264 Atomic orbital electron populations 1.23011 0.79249 1.03703 1.00762 1.86241 1.20406 1.26001 1.88999 1.18344 0.89428 0.85081 1.02686 1.20956 0.99502 0.91577 1.07439 1.20537 0.93593 0.96618 1.01943 1.19347 0.93464 0.93620 1.01984 1.20827 0.98551 0.93276 0.89836 1.60713 1.52550 1.04165 1.13070 1.21497 0.88894 0.91352 0.98513 0.89594 1.24066 0.97572 1.00576 1.00112 1.23292 0.99264 0.97304 0.97463 1.21454 0.93667 0.98894 1.00203 1.22526 0.96477 0.99009 0.96933 1.21027 1.00455 0.90750 1.06916 1.18402 0.88506 0.87006 0.98884 1.86283 1.20878 1.27298 1.87320 1.23311 0.75028 1.03197 0.99339 1.19105 0.94107 0.88951 0.98932 1.20971 0.90371 0.92862 1.52211 0.92451 1.24988 0.99080 0.95136 0.94962 1.69981 1.35415 0.97598 1.49699 0.86503 0.84986 0.77777 0.78207 1.20497 1.21037 1.19808 0.88446 0.93026 0.93055 0.85255 0.86025 0.90337 0.94275 0.83366 0.85950 0.85995 0.91092 0.90702 0.90796 0.90285 0.84878 0.93353 0.93332 0.95363 0.95378 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.06 10.28 -34.21 -0.35 -5.42 16 3 C 0.09 1.50 6.70 -39.12 -0.26 1.24 16 4 C -0.18 -2.31 9.04 -39.46 -0.36 -2.67 16 5 C -0.11 -1.34 9.69 -39.57 -0.38 -1.72 16 6 C -0.08 -1.10 5.39 -104.62 -0.56 -1.66 16 7 C 0.10 1.12 5.64 -4.97 -0.03 1.09 16 8 N -0.68 -7.13 6.28 -108.09 -0.68 -7.81 16 9 C 0.11 0.99 3.21 -67.81 -0.22 0.77 16 10 H 0.09 0.76 7.84 -51.93 -0.41 0.35 16 11 C -0.20 -1.95 10.08 -35.70 -0.36 -2.31 16 12 C -0.15 -1.35 10.78 -35.70 -0.38 -1.74 16 13 C -0.10 -0.79 6.81 -26.72 -0.18 -0.97 16 14 C -0.11 -0.91 6.91 -24.91 -0.17 -1.09 16 15 C -0.17 -2.72 8.69 -39.46 -0.34 -3.06 16 16 C 0.12 2.21 6.70 -39.12 -0.26 1.94 16 17 O -0.30 -6.69 9.92 -34.23 -0.34 -7.03 16 18 C 0.07 1.45 4.68 37.16 0.17 1.62 16 19 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 20 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 24 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 30 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 31 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 34 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.35 3.98 8.46 -39.29 -0.33 3.65 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.71 8.09 -51.92 -0.42 0.29 16 42 H 0.13 2.06 6.30 -52.48 -0.33 1.73 16 43 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 44 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -31.84 387.49 -10.32 -42.16 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.59 Total: 2.15 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.91 Total: -20.24 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.06 Total: -33.87 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.69 Total: -12.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.84 -10.32 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850358237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.346 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds